Wall clock time and date at job start Tue Mar 31 2020 11:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47273 * 2 1 4 4 C 1.52991 * 109.47262 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.47125 * 179.97438 * 4 3 2 6 6 N 1.29017 * 124.91870 * 90.00229 * 5 4 3 7 7 C 1.31778 * 117.12688 * 179.97438 * 6 5 4 8 8 C 1.50701 * 122.75106 * 180.02562 * 7 6 5 9 9 N 1.46501 * 109.47300 * 275.00027 * 8 7 6 10 10 C 1.39686 * 120.00326 * 179.97438 * 9 8 7 11 11 C 1.39337 * 119.94814 * 359.73022 * 10 9 8 12 12 C 1.38482 * 120.42219 * 179.72187 * 11 10 9 13 13 C 1.37682 * 120.32374 * 0.54763 * 12 11 10 14 14 C 1.40752 * 119.89560 * 359.72732 * 13 12 11 15 15 C 1.41410 * 120.20916 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99379 * 204.45088 * 15 14 13 17 17 C 1.39921 * 119.99837 * 24.44547 * 15 14 13 18 18 N 1.30828 * 120.00550 * 17.90293 * 17 15 14 19 19 Si 1.86808 * 119.99767 * 197.89247 * 17 15 14 20 20 H 1.48501 * 109.46942 * 90.00509 * 19 17 15 21 21 H 1.48501 * 109.46927 * 210.00254 * 19 17 15 22 22 H 1.48492 * 109.47169 * 330.00573 * 19 17 15 23 23 C 1.38271 * 119.95690 * 179.97438 * 10 9 8 24 24 C 1.33643 * 114.50205 * 359.97438 * 7 6 5 25 25 S 1.70985 * 124.91506 * 269.69989 * 5 4 3 26 26 H 1.09001 * 109.47090 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47219 * 299.99633 * 1 2 3 28 28 H 1.08997 * 109.47054 * 60.00168 * 1 2 3 29 29 H 1.09002 * 109.47144 * 239.99597 * 2 1 3 30 30 H 1.09007 * 109.47163 * 119.99840 * 2 1 3 31 31 H 1.09007 * 109.46895 * 300.00003 * 3 2 1 32 32 H 1.09002 * 109.46873 * 59.99536 * 3 2 1 33 33 H 1.08997 * 109.47322 * 299.99988 * 4 3 2 34 34 H 1.09004 * 109.46963 * 60.00531 * 4 3 2 35 35 H 1.08997 * 109.47081 * 35.00294 * 8 7 6 36 36 H 1.09000 * 109.47336 * 154.99957 * 8 7 6 37 37 H 0.97002 * 119.99917 * 0.02562 * 9 8 7 38 38 H 1.08003 * 119.78995 * 359.97438 * 11 10 9 39 39 H 1.08002 * 119.83840 * 180.27893 * 12 11 10 40 40 H 1.08005 * 120.05466 * 179.74587 * 13 12 11 41 41 H 0.96991 * 120.00441 * 179.97438 * 18 17 15 42 42 H 1.08011 * 120.16003 * 359.97438 * 23 10 9 43 43 H 1.07992 * 126.03752 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8633 0.0000 6 7 4.3181 3.5602 1.0576 7 6 4.7539 4.7909 0.8784 8 6 5.0806 5.7149 2.0232 9 7 3.8588 6.3873 2.4720 10 6 3.9111 7.2979 3.5299 11 6 5.1248 7.5617 4.1614 12 6 5.1889 8.4669 5.2074 13 6 4.0508 9.1082 5.6425 14 6 2.8166 8.8476 5.0181 15 6 1.6437 9.5029 5.4592 16 1 0.6769 9.0536 5.2867 17 6 1.7359 10.7333 6.1191 18 7 2.8301 11.4446 6.0274 19 14 0.2963 11.3605 7.1311 20 1 0.4290 10.8815 8.5304 21 1 0.2895 12.8454 7.1147 22 1 -0.9737 10.8532 6.5526 23 6 2.7575 7.9325 3.9524 24 6 4.8834 5.1521 -0.4018 25 16 4.4061 3.7827 -1.4025 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8901 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9563 0.8900 33 1 3.9330 0.9288 0.8908 34 1 3.9337 0.9286 -0.8892 35 1 5.5014 5.1382 2.8468 36 1 5.8051 6.4596 1.6937 37 1 3.0134 6.1997 2.0349 38 1 6.0221 7.0600 3.8303 39 1 6.1355 8.6676 5.6872 40 1 4.1051 9.8103 6.4614 41 1 2.8938 12.2976 6.4846 42 1 1.8154 7.7261 3.4659 43 1 5.2234 6.1126 -0.7596 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453150933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:01 Heat of formation + Delta-G solvation = 42.336762 kcal Electronic energy + Delta-G solvation = -22259.165797 eV Core-core repulsion = 19008.720375 eV Total energy + Delta-G solvation = -3250.445422 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.10399 -37.73579 -36.29562 -34.93907 -33.18809 -32.04436 -29.81367 -29.60042 -28.01678 -25.89587 -25.25237 -24.95021 -22.30924 -21.38998 -20.74433 -20.14856 -19.75567 -17.77561 -17.29238 -15.86472 -15.76680 -15.48074 -15.10395 -14.93909 -14.53178 -14.19376 -13.98146 -13.74332 -13.48539 -13.29067 -12.99598 -12.74997 -12.52144 -12.48801 -12.05830 -11.62628 -11.57927 -11.51313 -11.47778 -11.29408 -11.10476 -10.98480 -10.89861 -10.55131 -10.37164 -9.79059 -9.72107 -9.53401 -9.28326 -9.18746 -8.89809 -8.70581 -7.35010 -6.67798 -6.18328 -4.27506 0.55706 1.20310 1.57186 2.60117 2.88674 3.12127 3.15925 3.26213 3.40567 3.82952 3.99940 4.42080 4.54181 4.61907 4.66394 4.75417 4.93656 4.99311 5.08546 5.24483 5.28835 5.31185 5.48876 5.54386 5.64275 5.72716 5.82910 5.84829 5.91806 6.00770 6.02763 6.09740 6.35546 6.57752 7.06586 7.07525 7.15418 7.37790 7.42421 7.66862 7.80863 7.95185 8.17961 8.28216 8.54085 8.64366 8.82378 9.03736 9.15430 10.28380 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.015069 B = 0.002490 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.685260 B =11240.814653 C =12485.327728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.115 4.115 4 C -0.042 4.042 5 C 0.051 3.949 6 N -0.456 5.456 7 C 0.062 3.938 8 C 0.212 3.788 9 N -0.756 5.756 10 C 0.226 3.774 11 C -0.302 4.302 12 C -0.074 4.074 13 C -0.199 4.199 14 C 0.141 3.859 15 C -0.464 4.464 16 H 0.075 0.925 17 C 0.078 3.922 18 N -0.792 5.792 19 Si 0.906 3.094 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.263 1.263 23 C -0.288 4.288 24 C -0.240 4.240 25 S 0.106 5.894 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.388 0.612 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.278 0.722 42 H 0.088 0.912 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 -17.356 -14.229 22.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.154 4.154 4 C -0.083 4.083 5 C -0.228 4.228 6 N -0.170 5.170 7 C -0.070 4.070 8 C 0.085 3.915 9 N -0.390 5.390 10 C 0.128 3.872 11 C -0.325 4.325 12 C -0.094 4.094 13 C -0.219 4.219 14 C 0.138 3.862 15 C -0.494 4.494 16 H 0.093 0.907 17 C -0.140 4.140 18 N -0.418 5.418 19 Si 0.731 3.269 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.187 1.187 23 C -0.311 4.311 24 C -0.380 4.380 25 S 0.361 5.639 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.221 0.779 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.132 0.868 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 1.500 -17.592 -14.732 22.995 hybrid contribution -0.634 1.009 0.878 1.480 sum 0.866 -16.582 -13.854 21.626 Atomic orbital electron populations 1.21775 0.95604 1.01659 1.02107 1.21512 0.96171 0.96149 1.02183 1.21639 0.93058 0.97574 1.03165 1.20301 0.96330 0.87479 1.04199 1.27074 1.03172 1.01790 0.90760 1.66109 1.13796 1.05744 1.31398 1.20461 1.00755 0.91358 0.94419 1.19496 0.88961 0.91477 0.91604 1.44311 1.07892 1.48280 1.38527 1.17438 0.94361 0.88635 0.86742 1.19856 0.94800 1.11064 1.06772 1.20432 0.96864 0.95996 0.96062 1.21180 0.92388 1.04691 1.03680 1.17335 0.92973 0.88247 0.87611 1.19549 0.94165 1.03180 1.32532 0.90657 1.25886 0.96875 0.96391 0.94846 1.69859 1.27412 1.10801 1.33699 0.86358 0.81980 0.77895 0.80702 1.19323 1.20425 1.18718 1.20381 0.94995 1.10655 1.05114 1.26948 1.11251 1.04058 0.95735 1.83885 1.60782 1.06071 1.13208 0.92693 0.92491 0.92715 0.91925 0.91667 0.91675 0.90949 0.88704 0.89765 0.91437 0.91519 0.77884 0.89669 0.89611 0.86752 0.91065 0.89392 0.80332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.12 -0.80 5.93 -26.73 -0.16 -0.95 16 3 C -0.12 -0.92 5.20 -26.74 -0.14 -1.06 16 4 C -0.04 -0.35 5.80 -27.89 -0.16 -0.51 16 5 C 0.05 0.57 6.64 -13.46 -0.09 0.48 16 6 N -0.46 -6.53 10.53 -8.05 -0.08 -6.62 16 7 C 0.06 0.88 6.11 -84.23 -0.51 0.37 16 8 C 0.21 3.43 5.34 -5.19 -0.03 3.40 16 9 N -0.76 -14.44 5.72 -59.86 -0.34 -14.78 16 10 C 0.23 5.26 6.64 -83.86 -0.56 4.70 16 11 C -0.30 -7.03 9.32 -39.08 -0.36 -7.39 16 12 C -0.07 -1.83 10.01 -39.69 -0.40 -2.22 16 13 C -0.20 -5.39 8.70 -38.84 -0.34 -5.73 16 14 C 0.14 3.92 5.57 -106.85 -0.60 3.33 16 15 C -0.46 -12.76 9.05 -37.75 -0.34 -13.10 16 16 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 17 C 0.08 2.01 5.14 -17.35 -0.09 1.92 16 18 N -0.79 -21.07 10.96 55.55 0.61 -20.46 16 19 Si 0.91 19.18 29.60 -169.99 -5.03 14.14 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 21 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16 23 C -0.29 -7.37 9.63 -38.68 -0.37 -7.75 16 24 C -0.24 -2.85 11.11 29.12 0.32 -2.53 16 25 S 0.11 1.04 23.18 -107.50 -2.49 -1.46 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 36 H 0.07 1.02 7.91 -51.93 -0.41 0.61 16 37 H 0.39 7.14 8.47 -40.82 -0.35 6.79 16 38 H 0.09 1.78 6.70 -52.48 -0.35 1.42 16 39 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.11 3.18 6.15 -52.48 -0.32 2.86 16 41 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 42 H 0.09 2.17 8.06 -52.48 -0.42 1.74 16 43 H 0.18 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 372.24 15.07 5.61 5.61 Total: -1.00 -29.71 372.24 -11.65 -41.36 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -6.47 Total: 9.90 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: -3.45 Total: -27.70 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.18 Total: -41.86 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.14 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.49 Total: -1.46 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.71 -11.65 -41.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453150933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.698 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds