Wall clock time and date at job start Tue Mar 31 2020 11:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47273 * 2 1 4 4 C 1.52991 * 109.47262 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.47125 * 179.97438 * 4 3 2 6 6 N 1.29017 * 124.91870 * 90.00229 * 5 4 3 7 7 C 1.31778 * 117.12688 * 179.97438 * 6 5 4 8 8 C 1.50701 * 122.75106 * 180.02562 * 7 6 5 9 9 N 1.46501 * 109.47300 * 275.00027 * 8 7 6 10 10 C 1.39686 * 120.00326 * 179.97438 * 9 8 7 11 11 C 1.39337 * 119.94814 * 359.73022 * 10 9 8 12 12 C 1.38482 * 120.42219 * 179.72187 * 11 10 9 13 13 C 1.37682 * 120.32374 * 0.54763 * 12 11 10 14 14 C 1.40752 * 119.89560 * 359.72732 * 13 12 11 15 15 C 1.41410 * 120.20916 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99379 * 204.45088 * 15 14 13 17 17 C 1.39921 * 119.99837 * 24.44547 * 15 14 13 18 18 N 1.30828 * 120.00550 * 17.90293 * 17 15 14 19 19 Si 1.86808 * 119.99767 * 197.89247 * 17 15 14 20 20 H 1.48501 * 109.46942 * 90.00509 * 19 17 15 21 21 H 1.48501 * 109.46927 * 210.00254 * 19 17 15 22 22 H 1.48492 * 109.47169 * 330.00573 * 19 17 15 23 23 C 1.38271 * 119.95690 * 179.97438 * 10 9 8 24 24 C 1.33643 * 114.50205 * 359.97438 * 7 6 5 25 25 S 1.70985 * 124.91506 * 269.69989 * 5 4 3 26 26 H 1.09001 * 109.47090 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47219 * 299.99633 * 1 2 3 28 28 H 1.08997 * 109.47054 * 60.00168 * 1 2 3 29 29 H 1.09002 * 109.47144 * 239.99597 * 2 1 3 30 30 H 1.09007 * 109.47163 * 119.99840 * 2 1 3 31 31 H 1.09007 * 109.46895 * 300.00003 * 3 2 1 32 32 H 1.09002 * 109.46873 * 59.99536 * 3 2 1 33 33 H 1.08997 * 109.47322 * 299.99988 * 4 3 2 34 34 H 1.09004 * 109.46963 * 60.00531 * 4 3 2 35 35 H 1.08997 * 109.47081 * 35.00294 * 8 7 6 36 36 H 1.09000 * 109.47336 * 154.99957 * 8 7 6 37 37 H 0.97002 * 119.99917 * 0.02562 * 9 8 7 38 38 H 1.08003 * 119.78995 * 359.97438 * 11 10 9 39 39 H 1.08002 * 119.83840 * 180.27893 * 12 11 10 40 40 H 1.08005 * 120.05466 * 179.74587 * 13 12 11 41 41 H 0.96991 * 120.00441 * 179.97438 * 18 17 15 42 42 H 1.08011 * 120.16003 * 359.97438 * 23 10 9 43 43 H 1.07992 * 126.03752 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8633 0.0000 6 7 4.3181 3.5602 1.0576 7 6 4.7539 4.7909 0.8784 8 6 5.0806 5.7149 2.0232 9 7 3.8588 6.3873 2.4720 10 6 3.9111 7.2979 3.5299 11 6 5.1248 7.5617 4.1614 12 6 5.1889 8.4669 5.2074 13 6 4.0508 9.1082 5.6425 14 6 2.8166 8.8476 5.0181 15 6 1.6437 9.5029 5.4592 16 1 0.6769 9.0536 5.2867 17 6 1.7359 10.7333 6.1191 18 7 2.8301 11.4446 6.0274 19 14 0.2963 11.3605 7.1311 20 1 0.4290 10.8815 8.5304 21 1 0.2895 12.8454 7.1147 22 1 -0.9737 10.8532 6.5526 23 6 2.7575 7.9325 3.9524 24 6 4.8834 5.1521 -0.4018 25 16 4.4061 3.7827 -1.4025 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8901 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9563 0.8900 33 1 3.9330 0.9288 0.8908 34 1 3.9337 0.9286 -0.8892 35 1 5.5014 5.1382 2.8468 36 1 5.8051 6.4596 1.6937 37 1 3.0134 6.1997 2.0349 38 1 6.0221 7.0600 3.8303 39 1 6.1355 8.6676 5.6872 40 1 4.1051 9.8103 6.4614 41 1 2.8938 12.2976 6.4846 42 1 1.8154 7.7261 3.4659 43 1 5.2234 6.1126 -0.7596 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453150933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:00 Heat of formation + Delta-G solvation = 26.985422 kcal Electronic energy + Delta-G solvation = -22259.831481 eV Core-core repulsion = 19008.720375 eV Total energy + Delta-G solvation = -3251.111106 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.08634 -39.56082 -37.11740 -36.46398 -34.93675 -33.00624 -31.70010 -30.77652 -29.40023 -27.18711 -27.01326 -26.05860 -23.30103 -22.57821 -22.06052 -21.83966 -20.74381 -19.22349 -18.73955 -17.38527 -17.09156 -16.46537 -16.41562 -16.22873 -16.09493 -15.47135 -14.98238 -14.81373 -14.60558 -14.52643 -14.34768 -14.09380 -13.91955 -13.67455 -13.36987 -13.16188 -12.98114 -12.80729 -12.50774 -12.33441 -12.20026 -12.18757 -12.08234 -11.87657 -11.69562 -11.46710 -11.21976 -11.07958 -10.62556 -10.51849 -10.40985 -9.79828 -9.35169 -8.61500 -7.99037 -6.33408 -0.33310 0.36315 0.67768 1.03782 1.33139 1.38725 1.51843 1.57704 1.59341 2.22613 2.79394 2.89539 3.03297 3.72725 3.84199 4.00606 4.02157 4.08358 4.24656 4.36728 4.43749 4.47942 4.51555 4.67160 4.71064 4.72641 4.77815 4.91359 4.98418 5.07587 5.11378 5.12623 5.15830 5.20633 5.26580 5.37627 5.39669 5.47116 5.55293 5.90813 6.00927 6.18821 6.29139 6.60167 6.75875 6.86740 6.94543 7.01621 7.20087 8.36983 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.015069 B = 0.002490 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.685260 B =11240.814653 C =12485.327728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.111 4.111 4 C -0.042 4.042 5 C 0.040 3.960 6 N -0.495 5.495 7 C 0.039 3.961 8 C 0.214 3.786 9 N -0.747 5.747 10 C 0.235 3.765 11 C -0.303 4.303 12 C -0.073 4.073 13 C -0.231 4.231 14 C 0.113 3.887 15 C -0.503 4.503 16 H 0.070 0.930 17 C 0.036 3.964 18 N -0.822 5.822 19 Si 0.983 3.017 20 H -0.262 1.262 21 H -0.266 1.266 22 H -0.260 1.260 23 C -0.312 4.312 24 C -0.245 4.245 25 S 0.174 5.826 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.391 0.609 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.287 0.713 42 H 0.086 0.914 43 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.570 -18.572 -16.013 24.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.150 4.150 4 C -0.083 4.083 5 C -0.238 4.238 6 N -0.210 5.210 7 C -0.093 4.093 8 C 0.087 3.913 9 N -0.379 5.379 10 C 0.135 3.865 11 C -0.326 4.326 12 C -0.092 4.092 13 C -0.252 4.252 14 C 0.110 3.890 15 C -0.532 4.532 16 H 0.088 0.912 17 C -0.179 4.179 18 N -0.448 5.448 19 Si 0.803 3.197 20 H -0.187 1.187 21 H -0.190 1.190 22 H -0.184 1.184 23 C -0.336 4.336 24 C -0.385 4.385 25 S 0.429 5.571 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.110 0.890 34 H 0.131 0.869 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.224 0.776 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.116 0.884 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 1.761 -18.846 -16.560 25.150 hybrid contribution -0.631 1.258 1.254 1.885 sum 1.130 -17.588 -15.306 23.343 Atomic orbital electron populations 1.21797 0.95830 1.02123 1.01619 1.21497 0.95941 0.95152 1.03047 1.21588 0.92958 0.98418 1.02041 1.20453 0.96253 0.86077 1.05467 1.27570 1.02314 1.02824 0.91114 1.66077 1.15381 1.06233 1.33316 1.20151 1.03105 0.91560 0.94449 1.19530 0.87615 0.91861 0.92312 1.44383 1.09404 1.47083 1.37078 1.17500 0.93628 0.88304 0.87118 1.20167 0.95808 1.10549 1.06095 1.20737 0.97105 0.95295 0.96074 1.21126 0.93367 1.06219 1.04486 1.17699 0.93615 0.89177 0.88498 1.19788 0.94023 1.04556 1.34859 0.91151 1.26762 0.99965 0.95934 0.95230 1.69910 1.29358 1.11357 1.34166 0.85207 0.78011 0.77744 0.78703 1.18661 1.18998 1.18377 1.20481 0.95981 1.11620 1.05514 1.27223 1.10035 1.05583 0.95684 1.83638 1.58869 1.03696 1.10850 0.91764 0.93748 0.92476 0.90119 0.91704 0.91307 0.93562 0.89014 0.86900 0.92418 0.90367 0.77563 0.86834 0.87111 0.88390 0.90192 0.89561 0.78850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.91 71.98 0.71 -1.17 16 2 C -0.12 -1.34 5.93 30.59 0.18 -1.15 16 3 C -0.11 -1.63 5.20 30.59 0.16 -1.47 16 4 C -0.04 -0.61 5.80 29.85 0.17 -0.43 16 5 C 0.04 0.83 6.64 88.52 0.59 1.42 16 6 N -0.50 -13.77 10.53 -179.40 -1.89 -15.66 16 7 C 0.04 1.07 6.11 41.52 0.25 1.32 16 8 C 0.21 6.70 5.34 85.63 0.46 7.16 16 9 N -0.75 -28.34 5.72 -343.30 -1.96 -30.31 16 10 C 0.24 10.99 6.64 38.16 0.25 11.25 16 11 C -0.30 -13.93 9.32 22.59 0.21 -13.72 16 12 C -0.07 -3.60 10.01 22.20 0.22 -3.38 16 13 C -0.23 -12.96 8.70 22.75 0.20 -12.76 16 14 C 0.11 6.53 5.57 -21.31 -0.12 6.41 16 15 C -0.50 -28.76 9.05 23.46 0.21 -28.54 16 16 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 17 C 0.04 1.91 5.14 85.25 0.44 2.34 16 18 N -0.82 -44.81 10.96 21.82 0.24 -44.57 16 19 Si 0.98 39.83 29.60 68.60 2.03 41.86 16 20 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 21 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 22 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 23 C -0.31 -16.52 9.63 22.85 0.22 -16.30 16 24 C -0.24 -5.30 11.11 66.78 0.74 -4.56 16 25 S 0.17 2.91 23.18 -56.49 -1.31 1.60 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.06 1.92 7.93 -2.39 -0.02 1.91 16 36 H 0.08 2.27 7.91 -2.39 -0.02 2.25 16 37 H 0.39 14.40 8.47 -92.71 -0.79 13.61 16 38 H 0.11 4.52 6.70 -2.91 -0.02 4.50 16 39 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 40 H 0.10 5.70 6.15 -2.91 -0.02 5.68 16 41 H 0.29 14.08 8.30 -92.71 -0.77 13.31 16 42 H 0.09 4.44 8.06 -2.90 -0.02 4.42 16 43 H 0.19 3.46 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -66.31 372.24 2.23 -64.08 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: 0.22 Total: 36.60 kcal Atomic # 6 Polarization: -58.50 SS G_CDS: 4.90 Total: -53.60 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -3.61 Total: -90.54 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -1.31 Total: 1.60 kcal Total: -66.31 2.23 -64.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453150933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.067 kcal (2) G-P(sol) polarization free energy of solvation -66.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds