Wall clock time and date at job start Tue Mar 31 2020 10:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38275 * 119.96626 * 2 1 4 4 C 1.38281 * 120.13407 * 180.02562 * 3 2 1 5 5 C 1.50688 * 119.97063 * 180.02562 * 4 3 2 6 6 C 1.38129 * 120.05649 * 359.97438 * 4 3 2 7 7 C 1.38820 * 119.93833 * 0.02562 * 6 4 3 8 8 N 1.40195 * 120.06407 * 179.97438 * 7 6 4 9 9 C 1.37857 * 126.53654 * 309.95432 * 8 7 6 10 10 C 1.34390 * 106.95173 * 180.02562 * 9 8 7 11 11 N 1.34377 * 108.40731 * 359.77639 * 10 9 8 12 12 C 1.31278 * 109.35310 * 0.37610 * 11 10 9 13 13 S 1.76204 * 125.81768 * 179.89165 * 12 11 10 14 14 C 1.80997 * 100.00146 * 359.68980 * 13 12 11 15 15 H 1.09002 * 109.47024 * 305.00066 * 14 13 12 16 16 C 1.53000 * 109.46999 * 64.99976 * 14 13 12 17 17 C 1.52997 * 109.47201 * 184.99987 * 14 13 12 18 18 C 1.50706 * 109.47238 * 64.99652 * 17 14 13 19 19 H 1.07999 * 119.99515 * 0.02562 * 18 17 14 20 20 C 1.37870 * 120.00176 * 180.02562 * 18 17 14 21 21 N 1.31520 * 119.99883 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00043 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47216 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47389 * 119.99848 * 22 20 18 25 25 H 1.48501 * 109.47057 * 239.99829 * 22 20 18 26 26 C 1.38122 * 119.96674 * 180.29623 * 2 1 3 27 27 H 1.09000 * 109.47312 * 89.99894 * 1 2 3 28 28 H 1.08999 * 109.47117 * 210.00505 * 1 2 3 29 29 H 1.09005 * 109.47187 * 330.00038 * 1 2 3 30 30 H 1.08002 * 119.93483 * 0.02562 * 3 2 1 31 31 H 1.08995 * 109.47675 * 269.97690 * 5 4 3 32 32 H 1.09006 * 109.47193 * 29.98250 * 5 4 3 33 33 H 1.09001 * 109.47361 * 149.97641 * 5 4 3 34 34 H 1.08003 * 120.02471 * 180.02562 * 6 4 3 35 35 H 1.08006 * 126.52489 * 0.03756 * 9 8 7 36 36 H 1.08004 * 125.80144 * 180.02562 * 10 9 8 37 37 H 1.09000 * 109.47090 * 299.99874 * 16 14 13 38 38 H 1.08993 * 109.47376 * 60.00193 * 16 14 13 39 39 H 1.09006 * 109.46634 * 180.02562 * 16 14 13 40 40 H 1.09001 * 109.46832 * 304.99966 * 17 14 13 41 41 H 1.09000 * 109.47611 * 185.00263 * 17 14 13 42 42 H 0.97004 * 119.99507 * 180.02562 * 21 20 18 43 43 H 1.08002 * 120.03145 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1979 0.0000 4 6 3.5805 1.2020 -0.0005 5 6 4.3294 2.5095 0.0001 6 6 4.2758 0.0084 -0.0005 7 6 3.5851 -1.1957 -0.0005 8 7 4.2882 -2.4087 -0.0011 9 6 5.3148 -2.7618 -0.8506 10 6 5.6993 -4.0026 -0.5061 11 7 4.9425 -4.4098 0.5269 12 6 4.0865 -3.4645 0.8384 13 16 2.8867 -3.5433 2.1264 14 6 3.2236 -5.2016 2.7688 15 1 3.1593 -5.9258 1.9567 16 6 4.6281 -5.2381 3.3747 17 6 2.1944 -5.5501 3.8458 18 6 0.8246 -5.6345 3.2231 19 1 0.7007 -5.4576 2.1650 20 6 -0.2704 -5.9374 4.0043 21 7 -0.1195 -6.1524 5.2930 22 14 -1.9681 -6.0426 3.2323 23 1 -1.8689 -5.7602 1.7778 24 1 -2.5208 -7.4058 3.4357 25 1 -2.8644 -5.0449 3.8698 26 6 2.1969 -1.1966 -0.0062 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6561 2.1323 0.0004 31 1 4.5100 2.8254 -1.0274 32 1 3.7378 3.2669 0.5144 33 1 5.2823 2.3823 0.5138 34 1 5.3558 0.0122 -0.0005 35 1 5.7312 -2.1564 -1.6423 36 1 6.4859 -4.5739 -0.9767 37 1 5.3614 -4.9898 2.6074 38 1 4.6925 -4.5140 4.1867 39 1 4.8311 -6.2370 3.7611 40 1 2.1970 -4.7774 4.6146 41 1 2.4491 -6.5101 4.2948 42 1 -0.8898 -6.3659 5.8425 43 1 1.6569 -2.1318 -0.0114 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000470442420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:37 Heat of formation + Delta-G solvation = 68.157977 kcal Electronic energy + Delta-G solvation = -23531.030025 eV Core-core repulsion = 20281.704296 eV Total energy + Delta-G solvation = -3249.325730 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.86729 -39.49650 -34.72798 -34.19843 -33.75562 -32.02629 -30.17306 -29.37866 -27.42640 -27.35455 -26.89191 -23.36663 -23.24743 -21.59477 -21.33528 -20.50212 -19.90801 -17.91683 -16.42374 -16.33544 -16.15522 -15.53257 -14.83679 -14.56853 -14.45421 -14.16526 -13.98212 -13.88466 -13.40667 -13.37590 -13.16224 -12.89293 -12.71092 -12.45186 -12.14710 -11.88991 -11.76789 -11.66262 -11.50447 -11.29555 -11.12168 -10.76420 -10.58513 -10.49679 -10.09205 -9.80570 -9.45627 -9.40528 -9.17244 -8.97947 -8.76554 -8.57315 -8.38068 -6.82973 -6.02811 -4.04639 0.90429 1.13737 1.85576 2.15987 2.88398 3.12796 3.25056 3.30949 3.38634 3.43565 3.47067 4.45294 4.53622 4.58210 4.78149 4.94770 5.04587 5.15082 5.20881 5.31027 5.34511 5.35190 5.38525 5.54275 5.54413 5.65435 5.68337 5.85212 5.86046 5.97769 5.99009 6.07026 6.24827 6.25473 6.38327 6.42630 6.65402 6.66210 6.71245 6.77506 6.97422 7.27056 7.54566 7.60654 7.94721 8.10486 8.32239 9.00597 9.59386 11.08388 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.011841 B = 0.004538 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.125855 B = 6168.710944 C = 7768.474327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.061 4.061 3 C -0.119 4.119 4 C -0.071 4.071 5 C -0.112 4.112 6 C -0.123 4.123 7 C 0.133 3.867 8 N -0.410 5.410 9 C -0.062 4.062 10 C -0.015 4.015 11 N -0.487 5.487 12 C 0.210 3.790 13 S 0.000 6.000 14 C -0.052 4.052 15 H 0.089 0.911 16 C -0.147 4.147 17 C 0.036 3.964 18 C -0.519 4.519 19 H 0.063 0.937 20 C 0.060 3.940 21 N -0.894 5.894 22 Si 0.890 3.110 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.112 4.112 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.127 0.873 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.126 0.874 35 H 0.172 0.828 36 H 0.171 0.829 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.026 0.974 41 H 0.039 0.961 42 H 0.260 0.740 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.282 15.874 -12.412 21.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.061 4.061 3 C -0.137 4.137 4 C -0.072 4.072 5 C -0.169 4.169 6 C -0.143 4.143 7 C 0.041 3.959 8 N -0.093 5.093 9 C -0.194 4.194 10 C -0.164 4.164 11 N -0.209 5.209 12 C -0.158 4.158 13 S 0.232 5.768 14 C -0.181 4.181 15 H 0.107 0.893 16 C -0.206 4.206 17 C -0.003 4.003 18 C -0.558 4.558 19 H 0.082 0.918 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.718 3.282 23 H -0.195 1.195 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.131 4.131 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.145 0.855 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.144 0.856 35 H 0.189 0.811 36 H 0.188 0.812 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.044 0.956 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.404 15.931 -11.500 20.997 hybrid contribution 0.049 -0.375 -1.243 1.300 sum 7.453 15.556 -12.744 21.446 Atomic orbital electron populations 1.20853 0.90272 1.03765 1.02590 1.19786 0.96573 0.92021 0.97745 1.21012 0.93371 0.97782 1.01577 1.19704 0.93743 0.94692 0.99077 1.20778 1.00024 0.93666 1.02413 1.20851 0.99919 0.90437 1.03053 1.17637 0.91061 0.83829 1.03333 1.43040 1.27907 1.11810 1.26549 1.22712 0.96025 0.99762 1.00943 1.22306 1.02278 0.94224 0.97555 1.70884 1.07638 1.26774 1.15601 1.26274 1.03567 0.85865 1.00117 1.86068 1.35520 1.25020 1.30176 1.23565 0.99319 0.92380 1.02865 0.89296 1.22121 0.95917 1.01698 1.00837 1.19101 0.91601 0.97660 0.91898 1.21303 0.91703 1.47524 0.95268 0.91845 1.24981 0.99172 0.95224 0.94763 1.69971 1.30457 1.48016 1.04860 0.86556 0.84370 0.77637 0.79661 1.19544 1.21024 1.20989 1.21109 0.92047 0.99471 1.00502 0.90921 0.90465 0.91143 0.85517 0.91030 0.91183 0.91403 0.85569 0.81067 0.81222 0.91453 0.92940 0.92327 0.95600 0.94308 0.92983 0.84431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 10.01 36.01 0.36 -0.83 16 2 C -0.06 -0.73 5.88 -104.65 -0.62 -1.35 16 3 C -0.12 -1.24 9.35 -39.55 -0.37 -1.61 16 4 C -0.07 -0.74 5.88 -104.65 -0.62 -1.35 16 5 C -0.11 -0.80 10.01 36.00 0.36 -0.44 16 6 C -0.12 -1.49 9.36 -39.41 -0.37 -1.86 16 7 C 0.13 1.94 5.86 -83.60 -0.49 1.45 16 8 N -0.41 -6.63 2.91 -60.74 -0.18 -6.80 16 9 C -0.06 -0.86 11.32 -16.20 -0.18 -1.05 16 10 C -0.02 -0.23 11.84 -17.80 -0.21 -0.44 16 11 N -0.49 -9.11 8.70 -13.38 -0.12 -9.23 16 12 C 0.21 3.96 7.51 -88.48 -0.66 3.29 16 13 S 0.00 0.00 19.41 -107.50 -2.09 -2.08 16 14 C -0.05 -1.14 2.27 -26.73 -0.06 -1.20 16 15 H 0.09 2.03 8.14 -51.92 -0.42 1.60 16 16 C -0.15 -2.83 9.01 37.16 0.33 -2.49 16 17 C 0.04 0.92 4.44 -27.88 -0.12 0.80 16 18 C -0.52 -14.36 8.53 -34.44 -0.29 -14.66 16 19 H 0.06 1.74 7.60 -52.49 -0.40 1.34 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 22 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 C -0.11 -1.62 8.52 -39.41 -0.34 -1.95 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 29 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 33 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 34 H 0.13 1.37 8.06 -52.48 -0.42 0.94 16 35 H 0.17 1.74 8.06 -52.48 -0.42 1.31 16 36 H 0.17 1.99 8.06 -52.48 -0.42 1.57 16 37 H 0.07 1.28 5.87 -51.93 -0.30 0.97 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.14 2.19 7.59 -52.49 -0.40 1.79 16 LS Contribution 371.34 15.07 5.60 5.60 Total: -1.00 -31.56 371.34 -11.01 -42.57 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.57 Total: 1.23 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -3.37 Total: -22.09 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 0.44 Total: -41.70 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.09 Total: -2.08 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.56 -11.01 -42.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000470442420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.728 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds