Wall clock time and date at job start Tue Mar 31 2020 10:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38293 * 119.97140 * 2 1 4 4 C 1.38249 * 120.13609 * 179.97438 * 3 2 1 5 5 C 1.38147 * 120.06338 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.03237 * 179.97438 * 5 4 3 7 7 C 1.38807 * 119.93397 * 0.25574 * 5 4 3 8 8 N 1.40199 * 120.06695 * 179.69718 * 7 5 4 9 9 C 1.37852 * 126.53890 * 244.69323 * 8 7 5 10 10 C 1.34394 * 106.94531 * 179.83973 * 9 8 7 11 11 N 1.34372 * 108.40796 * 0.42401 * 10 9 8 12 12 C 1.31270 * 109.35927 * 359.73084 * 11 10 9 13 13 S 1.76197 * 125.82401 * 179.97438 * 12 11 10 14 14 C 1.81002 * 100.00136 * 0.02562 * 13 12 11 15 15 H 1.09003 * 109.46636 * 304.99983 * 14 13 12 16 16 C 1.53003 * 109.47077 * 64.99585 * 14 13 12 17 17 C 1.52998 * 109.47481 * 185.00029 * 14 13 12 18 18 C 1.50702 * 109.47077 * 64.99784 * 17 14 13 19 19 H 1.08003 * 119.99844 * 0.02562 * 18 17 14 20 20 C 1.37877 * 120.00049 * 180.02562 * 18 17 14 21 21 N 1.31509 * 119.99956 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99875 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46744 * 90.00274 * 22 20 18 24 24 H 1.48497 * 109.46683 * 209.99825 * 22 20 18 25 25 H 1.48497 * 109.47346 * 330.00127 * 22 20 18 26 26 C 1.38100 * 119.96185 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47400 * 89.99654 * 1 2 3 28 28 H 1.08997 * 109.47435 * 210.00116 * 1 2 3 29 29 H 1.09002 * 109.47329 * 330.00269 * 1 2 3 30 30 H 1.08006 * 119.93142 * 359.95213 * 3 2 1 31 31 H 1.07999 * 119.97250 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.47152 * 90.00130 * 6 5 4 33 33 H 1.09001 * 109.46980 * 330.00230 * 6 5 4 34 34 H 1.09004 * 109.47113 * 210.00211 * 6 5 4 35 35 H 1.07997 * 126.52577 * 359.97438 * 9 8 7 36 36 H 1.08004 * 125.79641 * 180.15356 * 10 9 8 37 37 H 1.08994 * 109.47134 * 300.00377 * 16 14 13 38 38 H 1.09003 * 109.46563 * 60.00490 * 16 14 13 39 39 H 1.09002 * 109.47018 * 180.02562 * 16 14 13 40 40 H 1.08996 * 109.47040 * 184.99856 * 17 14 13 41 41 H 1.09000 * 109.46708 * 305.00161 * 17 14 13 42 42 H 0.96998 * 120.00050 * 179.97438 * 21 20 18 43 43 H 1.08000 * 120.03716 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2020 0.0005 5 6 4.2758 0.0083 0.0005 6 6 5.7829 0.0135 0.0005 7 6 3.5852 -1.1957 -0.0054 8 7 4.2882 -2.4087 -0.0118 9 6 4.2898 -3.3511 -1.0179 10 6 5.0943 -4.3503 -0.6174 11 7 5.5720 -4.0478 0.6016 12 6 5.0964 -2.8839 0.9788 13 16 5.4424 -2.0740 2.5049 14 6 6.5539 -3.2869 3.2595 15 1 6.0633 -4.2598 3.2897 16 6 7.8364 -3.3879 2.4313 17 6 6.8995 -2.8457 4.6832 18 6 5.6539 -2.8646 5.5312 19 1 4.7103 -3.1620 5.0982 20 6 5.7190 -2.5021 6.8599 21 7 6.8682 -2.1405 7.3873 22 14 4.1749 -2.5249 7.9110 23 1 4.0239 -3.8617 8.5398 24 1 4.2815 -1.4890 8.9696 25 1 2.9919 -2.2421 7.0590 26 6 2.1967 -1.1964 0.0005 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6562 2.1324 -0.0008 31 1 4.1172 2.1391 0.0001 32 1 6.1462 0.0147 1.0282 33 1 6.1431 0.9047 -0.5133 34 1 6.1492 -0.8753 -0.5133 35 1 3.7494 -3.2957 -1.9513 36 1 5.3156 -5.2465 -1.1780 37 1 7.5902 -3.7023 1.4172 38 1 8.3270 -2.4150 2.4012 39 1 8.5056 -4.1187 2.8855 40 1 7.6373 -3.5276 5.1059 41 1 7.3088 -1.8357 4.6612 42 1 6.9139 -1.8852 8.3220 43 1 1.6567 -2.1317 0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000470447430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:43 Heat of formation + Delta-G solvation = 71.957107 kcal Electronic energy + Delta-G solvation = -23848.026585 eV Core-core repulsion = 20598.865598 eV Total energy + Delta-G solvation = -3249.160987 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.89610 -39.44815 -34.79830 -34.36400 -33.21429 -32.00716 -29.82289 -29.36283 -29.18323 -27.33022 -25.07781 -23.44155 -23.23495 -21.94385 -21.21623 -20.94299 -19.88521 -17.88803 -16.34760 -16.28922 -15.94345 -15.54642 -14.73785 -14.56379 -14.41098 -14.20184 -14.17097 -13.86489 -13.43414 -13.32625 -13.04120 -12.89612 -12.74475 -12.42083 -12.12331 -11.81661 -11.65340 -11.53016 -11.50056 -11.34771 -11.11519 -10.73578 -10.58385 -10.49707 -9.95601 -9.74730 -9.46424 -9.38495 -9.15988 -8.98610 -8.88148 -8.53461 -8.36753 -6.80169 -6.01833 -4.03500 0.94163 1.14629 1.87357 2.12484 2.91225 3.15963 3.27648 3.33457 3.39466 3.43990 3.44645 4.46809 4.58140 4.62227 4.78895 4.85987 4.97773 5.12944 5.30934 5.35549 5.37555 5.40432 5.49157 5.56294 5.66493 5.71302 5.73223 5.84065 5.86250 5.98812 6.08071 6.17387 6.23564 6.25722 6.33157 6.41113 6.64459 6.66335 6.70735 6.78217 6.98024 7.30586 7.54846 7.60694 7.95770 8.13592 8.33269 9.01579 9.60603 11.09300 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.011544 B = 0.004678 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.896740 B = 5984.492959 C = 7207.611239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C -0.107 4.107 4 C -0.107 4.107 5 C -0.064 4.064 6 C -0.125 4.125 7 C 0.117 3.883 8 N -0.408 5.408 9 C -0.061 4.061 10 C -0.016 4.016 11 N -0.489 5.489 12 C 0.213 3.787 13 S 0.001 5.999 14 C -0.053 4.053 15 H 0.088 0.912 16 C -0.146 4.146 17 C 0.037 3.963 18 C -0.520 4.520 19 H 0.062 0.938 20 C 0.061 3.939 21 N -0.894 5.894 22 Si 0.890 3.110 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.272 1.272 26 C -0.101 4.101 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.127 0.873 31 H 0.132 0.868 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.171 0.829 36 H 0.169 0.831 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.039 0.961 41 H 0.026 0.974 42 H 0.261 0.739 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.128 5.364 -19.101 21.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.086 4.086 3 C -0.125 4.125 4 C -0.126 4.126 5 C -0.066 4.066 6 C -0.182 4.182 7 C 0.026 3.974 8 N -0.092 5.092 9 C -0.194 4.194 10 C -0.165 4.165 11 N -0.211 5.211 12 C -0.156 4.156 13 S 0.234 5.766 14 C -0.182 4.182 15 H 0.106 0.894 16 C -0.205 4.205 17 C -0.002 4.002 18 C -0.558 4.558 19 H 0.081 0.919 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.120 4.120 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.145 0.855 31 H 0.150 0.850 32 H 0.113 0.887 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.188 0.812 36 H 0.187 0.813 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.071 0.929 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.944 6.051 -18.042 20.621 hybrid contribution -1.003 -0.884 -0.361 1.385 sum -8.947 5.167 -18.403 21.105 Atomic orbital electron populations 1.20777 0.90612 1.03199 1.02308 1.19732 0.96303 0.92337 1.00230 1.21123 0.94115 0.97657 0.99571 1.20941 0.94030 0.97155 1.00432 1.19972 0.96930 0.91546 0.98150 1.21001 0.90222 1.02543 1.04431 1.17451 0.90597 0.83690 1.05646 1.42912 1.36627 1.14846 1.14801 1.22711 1.08638 0.92228 0.95793 1.22281 1.00068 0.99941 0.94237 1.70875 1.25791 1.11462 1.12954 1.26228 0.96568 0.95336 0.97436 1.86062 1.60753 1.27409 1.02417 1.23562 0.95625 0.98964 1.00081 0.89365 1.22116 0.96461 1.01504 1.00420 1.19089 0.97769 0.97424 0.85902 1.21269 0.94664 1.45168 0.94748 0.91939 1.24968 0.95977 0.95164 0.97965 1.69951 1.24412 1.45479 1.13514 0.86616 0.83752 0.77744 0.80149 1.20631 1.21226 1.19673 1.20990 0.91984 0.98663 1.00407 0.91131 0.91355 0.91190 0.85456 0.85008 0.88699 0.91266 0.91771 0.81218 0.81345 0.91437 0.92949 0.92358 0.94341 0.95618 0.92937 0.85508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 36.01 0.36 -0.53 16 2 C -0.09 -0.92 5.88 -104.65 -0.62 -1.53 16 3 C -0.11 -1.08 9.70 -39.56 -0.38 -1.47 16 4 C -0.11 -1.19 9.70 -39.61 -0.38 -1.57 16 5 C -0.06 -0.86 5.74 -104.44 -0.60 -1.46 16 6 C -0.13 -1.64 8.64 36.01 0.31 -1.33 16 7 C 0.12 1.69 5.47 -83.59 -0.46 1.23 16 8 N -0.41 -6.46 2.11 -60.74 -0.13 -6.59 16 9 C -0.06 -0.84 11.51 -16.20 -0.19 -1.03 16 10 C -0.02 -0.25 11.84 -17.80 -0.21 -0.46 16 11 N -0.49 -9.01 8.71 -13.38 -0.12 -9.13 16 12 C 0.21 3.92 6.59 -88.49 -0.58 3.34 16 13 S 0.00 0.03 18.61 -107.50 -2.00 -1.97 16 14 C -0.05 -1.15 2.27 -26.73 -0.06 -1.21 16 15 H 0.09 2.02 8.14 -51.91 -0.42 1.60 16 16 C -0.15 -2.75 9.01 37.16 0.33 -2.42 16 17 C 0.04 0.94 4.44 -27.88 -0.12 0.82 16 18 C -0.52 -14.53 8.53 -34.44 -0.29 -14.82 16 19 H 0.06 1.75 7.60 -52.48 -0.40 1.35 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 22 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 25 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 26 C -0.10 -1.29 9.57 -39.40 -0.38 -1.67 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 29 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 30 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 31 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.09 1.38 6.80 -51.93 -0.35 1.03 16 33 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 34 H 0.06 0.92 7.14 -51.93 -0.37 0.55 16 35 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.17 1.97 8.06 -52.48 -0.42 1.55 16 37 H 0.07 1.25 5.88 -51.93 -0.31 0.94 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 367.04 15.07 5.53 5.53 Total: -1.00 -31.64 367.04 -10.84 -42.48 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.47 Total: 1.13 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -3.37 Total: -22.47 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.49 Total: -41.50 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.00 Total: -1.97 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.64 -10.84 -42.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000470447430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.436 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds