Wall clock time and date at job start Tue Mar 31 2020 10:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38293 * 119.97140 * 2 1 4 4 C 1.38249 * 120.13609 * 179.97438 * 3 2 1 5 5 C 1.38147 * 120.06338 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.03237 * 179.97438 * 5 4 3 7 7 C 1.38807 * 119.93397 * 0.25574 * 5 4 3 8 8 N 1.40199 * 120.06695 * 179.69718 * 7 5 4 9 9 C 1.37852 * 126.53890 * 244.69323 * 8 7 5 10 10 C 1.34394 * 106.94531 * 179.83973 * 9 8 7 11 11 N 1.34372 * 108.40796 * 0.42401 * 10 9 8 12 12 C 1.31270 * 109.35927 * 359.73084 * 11 10 9 13 13 S 1.76197 * 125.82401 * 179.97438 * 12 11 10 14 14 C 1.81002 * 100.00136 * 0.02562 * 13 12 11 15 15 H 1.09003 * 109.46636 * 304.99983 * 14 13 12 16 16 C 1.53003 * 109.47077 * 64.99585 * 14 13 12 17 17 C 1.52998 * 109.47481 * 185.00029 * 14 13 12 18 18 C 1.50702 * 109.47077 * 64.99784 * 17 14 13 19 19 H 1.08003 * 119.99844 * 0.02562 * 18 17 14 20 20 C 1.37877 * 120.00049 * 180.02562 * 18 17 14 21 21 N 1.31509 * 119.99956 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99875 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46744 * 90.00274 * 22 20 18 24 24 H 1.48497 * 109.46683 * 209.99825 * 22 20 18 25 25 H 1.48497 * 109.47346 * 330.00127 * 22 20 18 26 26 C 1.38100 * 119.96185 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47400 * 89.99654 * 1 2 3 28 28 H 1.08997 * 109.47435 * 210.00116 * 1 2 3 29 29 H 1.09002 * 109.47329 * 330.00269 * 1 2 3 30 30 H 1.08006 * 119.93142 * 359.95213 * 3 2 1 31 31 H 1.07999 * 119.97250 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.47152 * 90.00130 * 6 5 4 33 33 H 1.09001 * 109.46980 * 330.00230 * 6 5 4 34 34 H 1.09004 * 109.47113 * 210.00211 * 6 5 4 35 35 H 1.07997 * 126.52577 * 359.97438 * 9 8 7 36 36 H 1.08004 * 125.79641 * 180.15356 * 10 9 8 37 37 H 1.08994 * 109.47134 * 300.00377 * 16 14 13 38 38 H 1.09003 * 109.46563 * 60.00490 * 16 14 13 39 39 H 1.09002 * 109.47018 * 180.02562 * 16 14 13 40 40 H 1.08996 * 109.47040 * 184.99856 * 17 14 13 41 41 H 1.09000 * 109.46708 * 305.00161 * 17 14 13 42 42 H 0.96998 * 120.00050 * 179.97438 * 21 20 18 43 43 H 1.08000 * 120.03716 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2020 0.0005 5 6 4.2758 0.0083 0.0005 6 6 5.7829 0.0135 0.0005 7 6 3.5852 -1.1957 -0.0054 8 7 4.2882 -2.4087 -0.0118 9 6 4.2898 -3.3511 -1.0179 10 6 5.0943 -4.3503 -0.6174 11 7 5.5720 -4.0478 0.6016 12 6 5.0964 -2.8839 0.9788 13 16 5.4424 -2.0740 2.5049 14 6 6.5539 -3.2869 3.2595 15 1 6.0633 -4.2598 3.2897 16 6 7.8364 -3.3879 2.4313 17 6 6.8995 -2.8457 4.6832 18 6 5.6539 -2.8646 5.5312 19 1 4.7103 -3.1620 5.0982 20 6 5.7190 -2.5021 6.8599 21 7 6.8682 -2.1405 7.3873 22 14 4.1749 -2.5249 7.9110 23 1 4.0239 -3.8617 8.5398 24 1 4.2815 -1.4890 8.9696 25 1 2.9919 -2.2421 7.0590 26 6 2.1967 -1.1964 0.0005 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6562 2.1324 -0.0008 31 1 4.1172 2.1391 0.0001 32 1 6.1462 0.0147 1.0282 33 1 6.1431 0.9047 -0.5133 34 1 6.1492 -0.8753 -0.5133 35 1 3.7494 -3.2957 -1.9513 36 1 5.3156 -5.2465 -1.1780 37 1 7.5902 -3.7023 1.4172 38 1 8.3270 -2.4150 2.4012 39 1 8.5056 -4.1187 2.8855 40 1 7.6373 -3.5276 5.1059 41 1 7.3088 -1.8357 4.6612 42 1 6.9139 -1.8852 8.3220 43 1 1.6567 -2.1317 0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000470447430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:42 Heat of formation + Delta-G solvation = 58.113264 kcal Electronic energy + Delta-G solvation = -23848.626900 eV Core-core repulsion = 20598.865598 eV Total energy + Delta-G solvation = -3249.761301 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.08385 -40.37567 -36.50354 -35.57098 -34.28464 -33.97391 -30.91471 -30.36339 -30.19064 -29.26310 -25.93694 -25.25896 -24.44727 -23.11901 -22.63352 -22.06897 -21.29765 -18.98808 -18.51195 -17.32076 -17.19798 -16.67369 -16.56249 -16.06512 -15.64347 -15.27040 -15.22899 -14.87485 -14.73121 -14.44286 -14.21903 -14.15942 -13.90901 -13.66341 -13.55368 -13.29945 -12.99325 -12.88909 -12.61330 -12.56708 -12.44246 -12.40761 -12.37234 -12.18938 -11.54036 -11.34849 -11.06723 -11.01476 -10.94665 -10.54619 -10.29512 -9.86168 -9.46456 -8.28340 -8.20498 -6.29354 -0.00525 0.25975 0.41893 0.93410 1.39027 1.39125 1.41425 1.51280 1.90462 2.03714 2.40797 2.55592 3.14070 3.72627 3.75055 3.80878 3.99269 4.12188 4.17270 4.27385 4.28392 4.31645 4.50691 4.53106 4.58497 4.63670 4.67951 4.76388 4.83069 4.85507 4.92602 5.02120 5.06806 5.10932 5.22863 5.25947 5.30968 5.38209 5.45062 5.50151 5.50534 5.71587 5.76912 5.79458 6.17561 6.19168 6.81753 6.89835 7.38435 8.91136 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.011544 B = 0.004678 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.896740 B = 5984.492959 C = 7207.611239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.085 4.085 3 C -0.102 4.102 4 C -0.108 4.108 5 C -0.084 4.084 6 C -0.118 4.118 7 C 0.086 3.914 8 N -0.402 5.402 9 C -0.042 4.042 10 C -0.034 4.034 11 N -0.513 5.513 12 C 0.187 3.813 13 S -0.016 6.016 14 C -0.045 4.045 15 H 0.070 0.930 16 C -0.134 4.134 17 C 0.046 3.954 18 C -0.533 4.533 19 H 0.057 0.943 20 C 0.010 3.990 21 N -0.928 5.928 22 Si 0.954 3.046 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.267 1.267 26 C -0.114 4.114 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.160 0.840 31 H 0.156 0.844 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.045 0.955 35 H 0.208 0.792 36 H 0.198 0.802 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.017 0.983 41 H 0.005 0.995 42 H 0.264 0.736 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.483 6.455 -20.783 24.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.085 4.085 3 C -0.120 4.120 4 C -0.127 4.127 5 C -0.085 4.085 6 C -0.175 4.175 7 C -0.004 4.004 8 N -0.084 5.084 9 C -0.175 4.175 10 C -0.182 4.182 11 N -0.236 5.236 12 C -0.182 4.182 13 S 0.215 5.785 14 C -0.174 4.174 15 H 0.089 0.911 16 C -0.193 4.193 17 C 0.008 3.992 18 C -0.571 4.571 19 H 0.076 0.924 20 C -0.189 4.189 21 N -0.568 5.568 22 Si 0.779 3.221 23 H -0.198 1.198 24 H -0.204 1.204 25 H -0.192 1.192 26 C -0.134 4.134 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.178 0.822 31 H 0.173 0.827 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.064 0.936 35 H 0.225 0.775 36 H 0.215 0.785 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.035 0.965 41 H 0.024 0.976 42 H 0.073 0.927 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.304 7.147 -19.727 23.376 hybrid contribution -0.352 -1.194 0.000 1.245 sum -10.656 5.953 -19.727 23.198 Atomic orbital electron populations 1.20844 0.88467 1.03814 1.03620 1.20120 0.97871 0.91821 0.98731 1.21544 0.93885 0.98796 0.97787 1.21286 0.94780 0.97220 0.99365 1.20126 0.96915 0.92183 0.99322 1.20898 0.90624 1.02851 1.03156 1.17781 0.91368 0.83429 1.07813 1.43030 1.35633 1.15475 1.14268 1.23382 1.07208 0.90821 0.96095 1.22839 1.00449 1.01524 0.93430 1.70782 1.26426 1.11646 1.14708 1.25621 0.99045 0.96031 0.97475 1.85834 1.61117 1.27047 1.04457 1.23233 0.97232 0.98335 0.98647 0.91126 1.22002 0.95183 1.01951 1.00129 1.18860 0.96473 0.95688 0.88184 1.21524 0.95141 1.45025 0.95418 0.92445 1.25795 0.99096 0.94732 0.99251 1.70062 1.26427 1.46307 1.14007 0.85601 0.79906 0.78140 0.78440 1.19802 1.20392 1.19176 1.21127 0.91393 0.99698 1.01160 0.89365 0.91634 0.89711 0.82211 0.82674 0.90765 0.88771 0.93587 0.77486 0.78467 0.90880 0.92498 0.91784 0.96499 0.97632 0.92669 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.01 71.24 0.71 -0.70 16 2 C -0.08 -1.61 5.88 -19.88 -0.12 -1.73 16 3 C -0.10 -1.75 9.70 22.29 0.22 -1.54 16 4 C -0.11 -2.16 9.70 22.25 0.22 -1.94 16 5 C -0.08 -2.17 5.74 -19.75 -0.11 -2.28 16 6 C -0.12 -3.10 8.64 71.24 0.62 -2.48 16 7 C 0.09 2.42 5.47 38.09 0.21 2.63 16 8 N -0.40 -12.52 2.11 -346.08 -0.73 -13.25 16 9 C -0.04 -1.09 11.51 82.87 0.95 -0.14 16 10 C -0.03 -0.97 11.84 83.42 0.99 0.01 16 11 N -0.51 -19.00 8.71 -196.24 -1.71 -20.71 16 12 C 0.19 7.00 6.59 179.60 1.18 8.18 16 13 S -0.02 -0.69 18.61 -56.49 -1.05 -1.74 16 14 C -0.05 -2.04 2.27 30.59 0.07 -1.97 16 15 H 0.07 3.39 8.14 -2.39 -0.02 3.37 16 16 C -0.13 -5.20 9.01 71.98 0.65 -4.55 16 17 C 0.05 2.49 4.44 29.85 0.13 2.62 16 18 C -0.53 -30.66 8.53 25.60 0.22 -30.45 16 19 H 0.06 3.30 7.60 -2.91 -0.02 3.28 16 20 C 0.01 0.56 5.46 84.66 0.46 1.02 16 21 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 22 Si 0.95 45.10 29.54 68.60 2.03 47.12 16 23 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 26 C -0.11 -2.77 9.57 22.38 0.21 -2.55 16 27 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.89 8.08 -2.39 -0.02 0.87 16 29 H 0.08 0.85 8.09 -2.39 -0.02 0.83 16 30 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 31 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 32 H 0.07 2.24 6.80 -2.39 -0.02 2.22 16 33 H 0.09 1.87 8.09 -2.39 -0.02 1.85 16 34 H 0.05 1.34 7.14 -2.38 -0.02 1.32 16 35 H 0.21 3.59 8.06 -2.91 -0.02 3.57 16 36 H 0.20 4.21 8.06 -2.91 -0.02 4.19 16 37 H 0.07 2.77 5.88 -2.39 -0.01 2.75 16 38 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 43 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -70.33 367.04 6.42 -63.91 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.99 Total: 16.40 kcal Atomic # 6 Polarization: -42.46 SS G_CDS: 6.61 Total: -35.86 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -2.16 Total: -89.84 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 16 Polarization: -0.69 SS G_CDS: -1.05 Total: -1.74 kcal Total: -70.33 6.42 -63.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000470447430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.028 kcal (2) G-P(sol) polarization free energy of solvation -70.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds