Wall clock time and date at job start Tue Mar 31 2020 11:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38624 * 120.41271 * 2 1 4 4 C 1.38618 * 118.52505 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.41533 * 180.02562 * 4 3 2 6 6 N 1.32272 * 119.17391 * 0.02562 * 4 3 2 7 7 C 1.32349 * 120.75869 * 359.97438 * 6 4 3 8 8 N 1.39394 * 119.19451 * 180.02562 * 7 6 4 9 9 N 1.40072 * 126.11911 * 359.97438 * 8 7 6 10 10 C 1.30811 * 108.42520 * 180.02562 * 9 8 7 11 11 C 1.39853 * 108.51156 * 359.74418 * 10 9 8 12 12 C 1.36053 * 107.87790 * 0.42135 * 11 10 9 13 13 N 1.39405 * 126.28567 * 179.85090 * 12 11 10 14 14 C 1.34777 * 120.00019 * 359.68664 * 13 12 11 15 15 O 1.21592 * 119.99797 * 0.02562 * 14 13 12 16 16 N 1.34774 * 119.99902 * 180.02562 * 14 13 12 17 17 C 1.46507 * 119.99769 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.46707 * 180.02562 * 17 16 14 19 19 H 1.07993 * 120.00408 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99553 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00388 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99824 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47589 * 59.99940 * 22 20 18 24 24 H 1.48504 * 109.47356 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47017 * 299.99924 * 22 20 18 26 26 N 1.32267 * 120.41519 * 180.30232 * 2 1 3 27 27 H 1.09008 * 109.47121 * 90.00113 * 1 2 3 28 28 H 1.08997 * 109.46901 * 209.99005 * 1 2 3 29 29 H 1.08997 * 109.47632 * 329.99962 * 1 2 3 30 30 H 1.08003 * 120.73269 * 0.02562 * 3 2 1 31 31 H 1.09006 * 109.47238 * 269.98340 * 5 4 3 32 32 H 1.08999 * 109.47075 * 29.97902 * 5 4 3 33 33 H 1.08996 * 109.47104 * 149.97851 * 5 4 3 34 34 H 1.08000 * 125.74472 * 180.02562 * 10 9 8 35 35 H 1.08001 * 126.06316 * 180.29647 * 11 10 9 36 36 H 0.96999 * 119.99934 * 179.69234 * 13 12 11 37 37 H 0.96999 * 120.00050 * 359.97438 * 16 14 13 38 38 H 1.08999 * 109.46398 * 299.99705 * 17 16 14 39 39 H 1.08992 * 109.47350 * 59.99653 * 17 16 14 40 40 H 0.97005 * 120.00521 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2087 1.1955 0.0000 4 6 3.5942 1.1498 -0.0005 5 6 4.3995 2.4236 0.0000 6 7 4.2005 -0.0257 -0.0016 7 6 3.5001 -1.1486 -0.0015 8 7 4.1727 -2.3696 -0.0021 9 7 5.5621 -2.5468 -0.0032 10 6 5.8152 -3.8302 -0.0040 11 6 4.6001 -4.5224 0.0025 12 6 3.5962 -3.6041 -0.0022 13 7 2.2290 -3.8763 -0.0013 14 6 1.7960 -5.1526 -0.0016 15 8 2.5980 -6.0666 -0.0022 16 7 0.4742 -5.4158 -0.0012 17 6 0.0036 -6.8032 -0.0010 18 6 -1.5033 -6.8224 -0.0012 19 1 -2.0551 -5.8942 -0.0011 20 6 -2.1773 -8.0252 -0.0016 21 7 -1.5052 -9.1557 -0.0022 22 14 -4.0451 -8.0491 -0.0011 23 1 -4.5494 -7.3550 -1.2131 24 1 -4.5222 -9.4554 -0.0022 25 1 -4.5487 -7.3560 1.2118 26 7 2.1766 -1.1406 -0.0060 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8901 0.5137 29 1 -0.3634 0.8899 0.5138 30 1 1.6875 2.1414 0.0004 31 1 4.5935 2.7312 -1.0276 32 1 3.8414 3.2060 0.5142 33 1 5.3459 2.2548 0.5137 34 1 6.7973 -4.2796 -0.0045 35 1 4.4798 -5.5957 0.0081 36 1 1.5893 -3.1472 -0.0005 37 1 -0.1655 -4.6867 -0.0004 38 1 0.3733 -7.3123 -0.8911 39 1 0.3737 -7.3123 0.8888 40 1 -1.9795 -10.0019 -0.0021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489086230.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:06 Heat of formation + Delta-G solvation = 114.611580 kcal Electronic energy + Delta-G solvation = -25478.248403 eV Core-core repulsion = 21716.936589 eV Total energy + Delta-G solvation = -3761.311814 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.01339 -40.93178 -39.26529 -35.38541 -34.78049 -34.58406 -34.03695 -32.39778 -31.11696 -29.89618 -28.96585 -27.87438 -27.00807 -24.65535 -23.17735 -22.50701 -21.15503 -21.03939 -19.98310 -18.67829 -18.07663 -17.66179 -16.36803 -16.14761 -15.89641 -15.67995 -15.20665 -14.87590 -14.48844 -14.37233 -14.14113 -13.88799 -13.68460 -13.43878 -13.24184 -12.98208 -12.93147 -12.89723 -12.52836 -12.12609 -12.03538 -11.44003 -11.04976 -10.97249 -10.75706 -10.72651 -10.69604 -10.44973 -10.31458 -9.65453 -9.45918 -9.43641 -8.81102 -8.78450 -8.18546 -7.72219 -6.19970 -4.27287 0.32027 0.66018 1.62768 1.93467 2.92979 3.01040 3.23045 3.28438 3.29865 3.40481 3.41569 3.81902 3.88837 4.08096 4.28428 4.59524 4.68121 4.81343 4.83172 4.92159 5.10227 5.11023 5.16309 5.16474 5.27422 5.37091 5.52613 5.61190 5.66140 5.87580 6.18600 6.28461 6.55219 6.83604 6.96713 7.09858 7.34780 7.40171 7.46991 7.47892 7.72555 7.90896 7.99388 8.61195 8.77038 9.08809 9.39211 10.90089 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.015766 B = 0.003236 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.532752 B = 8651.717193 C =10401.499784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.217 3.783 3 C -0.258 4.258 4 C 0.209 3.791 5 C -0.106 4.106 6 N -0.517 5.517 7 C 0.582 3.418 8 N -0.337 5.337 9 N -0.272 5.272 10 C 0.085 3.915 11 C -0.279 4.279 12 C 0.363 3.637 13 N -0.659 5.659 14 C 0.696 3.304 15 O -0.569 6.569 16 N -0.715 5.715 17 C 0.266 3.734 18 C -0.545 4.545 19 H 0.063 0.937 20 C 0.065 3.935 21 N -0.884 5.884 22 Si 0.905 3.095 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 N -0.562 5.562 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.153 0.847 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.197 0.803 35 H 0.189 0.811 36 H 0.417 0.583 37 H 0.390 0.610 38 H 0.030 0.970 39 H 0.030 0.970 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.161 23.487 -0.016 24.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.071 3.929 3 C -0.281 4.281 4 C 0.062 3.938 5 C -0.163 4.163 6 N -0.236 5.236 7 C 0.228 3.772 8 N -0.123 5.123 9 N -0.090 5.090 10 C -0.105 4.105 11 C -0.311 4.311 12 C 0.146 3.854 13 N -0.312 5.312 14 C 0.395 3.605 15 O -0.446 6.446 16 N -0.367 5.367 17 C 0.146 3.854 18 C -0.584 4.584 19 H 0.081 0.919 20 C -0.139 4.139 21 N -0.521 5.521 22 Si 0.732 3.268 23 H -0.201 1.201 24 H -0.210 1.210 25 H -0.201 1.201 26 N -0.284 5.284 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.171 0.829 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.214 0.786 35 H 0.206 0.794 36 H 0.259 0.741 37 H 0.222 0.778 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.643 22.668 -0.022 24.260 hybrid contribution -2.405 0.564 -0.022 2.470 sum 6.238 23.232 -0.044 24.055 Atomic orbital electron populations 1.20897 0.86716 1.04820 1.04408 1.21540 0.97430 0.86608 0.87293 1.22487 0.95455 1.00545 1.09647 1.21691 0.91476 0.93100 0.87535 1.20818 1.00386 0.91105 1.04018 1.67722 1.40524 0.97028 1.18339 1.18439 0.84090 0.84338 0.90359 1.45349 1.05419 1.00277 1.61286 1.77833 0.85478 1.18300 1.27381 1.24205 1.00149 0.90474 0.95651 1.21877 0.88786 1.01932 1.18475 1.18001 0.85093 0.84194 0.98135 1.42641 1.03443 1.09558 1.75608 1.15942 0.84445 0.81148 0.78972 1.90809 1.53470 1.43374 1.56914 1.45741 1.02661 1.12264 1.76015 1.19114 0.93908 0.74314 0.98067 1.21149 0.90480 0.93059 1.53684 0.91889 1.24930 0.99135 0.95184 0.94642 1.69959 1.36033 0.97583 1.48521 0.86455 0.84406 0.77249 0.78671 1.20066 1.21033 1.20058 1.67149 1.07160 1.32256 1.21871 0.88916 0.89300 0.89419 0.82906 0.89285 0.89706 0.89539 0.78639 0.79440 0.74139 0.77785 0.95246 0.95246 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.22 36.00 0.37 -0.34 16 2 C 0.22 2.15 6.82 -82.26 -0.56 1.59 16 3 C -0.26 -2.11 9.53 -39.30 -0.37 -2.49 16 4 C 0.21 2.10 6.82 -82.26 -0.56 1.54 16 5 C -0.11 -0.63 10.22 36.00 0.37 -0.26 16 6 N -0.52 -7.36 10.18 -9.97 -0.10 -7.46 16 7 C 0.58 9.13 8.45 -321.72 -2.72 6.41 16 8 N -0.34 -5.82 3.80 -12.87 -0.05 -5.87 16 9 N -0.27 -4.52 12.34 30.62 0.38 -4.14 16 10 C 0.08 1.23 12.00 -17.38 -0.21 1.02 16 11 C -0.28 -4.84 9.65 -39.76 -0.38 -5.22 16 12 C 0.36 6.57 7.61 -152.35 -1.16 5.41 16 13 N -0.66 -11.74 5.36 -15.65 -0.08 -11.82 16 14 C 0.70 14.58 8.53 -86.92 -0.74 13.84 16 15 O -0.57 -13.58 13.47 5.28 0.07 -13.51 16 16 N -0.72 -15.05 5.55 -66.41 -0.37 -15.42 16 17 C 0.27 6.91 5.43 -5.19 -0.03 6.88 16 18 C -0.55 -14.43 9.28 -34.44 -0.32 -14.75 16 19 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 20 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.88 -25.56 13.29 55.43 0.74 -24.82 16 22 Si 0.91 20.42 29.54 -169.99 -5.02 15.39 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 N -0.56 -7.63 7.59 -9.97 -0.08 -7.70 16 27 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.34 8.10 -51.93 -0.42 -0.08 16 30 H 0.15 0.67 8.06 -52.48 -0.42 0.25 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.28 8.09 -51.93 -0.42 -0.14 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.20 1.93 8.06 -52.49 -0.42 1.50 16 35 H 0.19 3.52 5.83 -52.49 -0.31 3.22 16 36 H 0.42 6.58 6.28 -40.82 -0.26 6.32 16 37 H 0.39 7.00 8.34 -40.82 -0.34 6.66 16 38 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 349.96 15.07 5.27 5.27 Total: -1.00 -34.72 349.96 -10.32 -45.04 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -4.66 Total: 9.73 kcal Atomic # 6 Polarization: 21.72 SS G_CDS: -6.42 Total: 15.30 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: 0.44 Total: -77.23 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.07 Total: -13.51 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.72 -10.32 -45.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489086230.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.653 kcal (2) G-P(sol) polarization free energy of solvation -34.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds