Wall clock time and date at job start Tue Mar 31 2020 11:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47015 * 258.07787 * 3 2 1 5 5 C 1.36937 * 120.00006 * 264.22978 * 4 3 2 6 6 H 1.07997 * 120.00178 * 201.00314 * 5 4 3 7 7 C 1.38820 * 119.99802 * 20.99860 * 5 4 3 8 8 N 1.31618 * 119.99979 * 13.70086 * 7 5 4 9 9 Si 1.86797 * 119.99644 * 193.69853 * 7 5 4 10 10 H 1.48494 * 109.47270 * 84.98300 * 9 7 5 11 11 H 1.48500 * 109.46715 * 204.98238 * 9 7 5 12 12 H 1.48505 * 109.47345 * 324.98006 * 9 7 5 13 13 C 1.46494 * 119.99899 * 84.22736 * 4 3 2 14 14 C 1.50707 * 109.47202 * 269.99979 * 13 4 3 15 15 C 1.38332 * 119.86649 * 90.00234 * 14 13 4 16 16 C 1.37993 * 120.12942 * 179.97438 * 15 14 13 17 17 C 1.39431 * 119.86782 * 0.02562 * 16 15 14 18 18 C 1.48188 * 120.13127 * 179.97438 * 17 16 15 19 19 C 1.39199 * 120.20077 * 309.72107 * 18 17 16 20 20 C 1.38033 * 120.02344 * 179.69673 * 19 18 17 21 21 C 1.38521 * 120.44382 * 0.60619 * 20 19 18 22 22 C 1.37925 * 120.40811 * 359.67194 * 21 20 19 23 23 C 1.39559 * 119.96435 * 0.02562 * 22 21 20 24 24 C 1.43204 * 120.21992 * 179.97438 * 23 22 21 25 25 N 8.10317 * 85.86649 * 282.91898 * 2 1 3 26 26 C 1.39438 * 119.74172 * 359.97438 * 17 16 15 27 27 C 1.37991 * 119.86561 * 0.02562 * 26 17 16 28 28 H 4.40644 * 5.51337 * 179.97438 * 4 1 2 29 29 H 1.08994 * 109.47341 * 138.08024 * 3 2 1 30 30 H 1.08998 * 109.47393 * 18.07182 * 3 2 1 31 31 H 0.96995 * 119.99697 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.47073 * 150.00154 * 13 4 3 33 33 H 1.08992 * 109.47348 * 30.00171 * 13 4 3 34 34 H 1.08002 * 119.93526 * 359.95724 * 15 14 13 35 35 H 1.08003 * 120.06780 * 179.72394 * 16 15 14 36 36 H 1.08004 * 119.98645 * 359.97438 * 19 18 17 37 37 H 1.08003 * 119.78134 * 180.29540 * 20 19 18 38 38 H 1.08000 * 119.80049 * 179.69439 * 21 20 19 39 39 H 1.08006 * 120.01822 * 180.02562 * 22 21 20 40 40 H 1.08004 * 120.06882 * 179.97438 * 26 17 16 41 41 H 1.07998 * 119.93864 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2862 1.3515 5 6 3.4743 1.5660 1.7005 6 1 4.1336 1.7403 2.5379 7 6 2.9715 2.6393 0.9778 8 7 1.9710 2.4589 0.1418 9 14 3.7150 4.3395 1.1918 10 1 4.8971 4.4783 0.3039 11 1 2.7056 5.3693 0.8369 12 1 4.1332 4.5227 2.6050 13 6 3.2585 -0.7973 2.3295 14 6 1.9682 -0.9323 3.0965 15 6 0.9756 -1.7763 2.6316 16 6 -0.2077 -1.9044 3.3298 17 6 -0.4020 -1.1807 4.5056 18 6 -1.6708 -1.3135 5.2598 19 6 -2.8918 -1.1809 4.6047 20 6 -4.0714 -1.3115 5.3095 21 6 -4.0511 -1.5620 6.6718 22 6 -2.8514 -1.6910 7.3400 23 6 -1.6486 -1.5684 6.6430 24 6 -0.3999 -1.7007 7.3315 25 7 0.5899 -1.8069 7.8775 26 6 0.6021 -0.3316 4.9692 27 6 1.7812 -0.2117 4.2625 28 1 -1.0500 0.0002 -0.0002 29 1 3.0090 0.7654 -0.6865 30 1 3.0098 -0.9761 -0.3188 31 1 1.6200 3.2089 -0.3634 32 1 4.0702 -0.5712 3.0210 33 1 3.4726 -1.7319 1.8112 34 1 1.1270 -2.3358 1.7203 35 1 -0.9838 -2.5603 2.9636 36 1 -2.9163 -0.9803 3.5438 37 1 -5.0167 -1.2126 4.7965 38 1 -4.9803 -1.6574 7.2139 39 1 -2.8429 -1.8867 8.4021 40 1 0.4570 0.2318 5.8792 41 1 2.5599 0.4453 4.6207 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491384479.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:23 Heat of formation + Delta-G solvation = 164.192051 kcal Electronic energy + Delta-G solvation = -24737.752199 eV Core-core repulsion = 21357.146868 eV Total energy + Delta-G solvation = -3380.605331 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.127 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.95416 -38.35545 -36.37481 -35.98482 -32.99418 -31.56814 -31.49012 -31.15488 -30.33992 -29.11321 -26.22462 -25.66773 -23.95920 -23.04193 -21.92215 -21.51186 -20.16720 -18.84518 -17.44180 -16.74376 -16.41597 -15.60551 -15.48972 -14.99762 -14.70694 -14.62392 -14.22427 -13.88929 -13.74564 -13.33826 -13.32029 -13.12374 -12.91658 -12.71558 -12.58076 -12.47471 -12.04373 -11.64138 -11.51837 -11.44477 -11.26281 -10.96120 -10.83006 -10.73471 -10.39786 -10.27365 -9.99467 -9.25991 -9.11346 -8.94643 -8.84207 -8.41298 -8.32620 -7.82761 -7.02568 -5.82418 -3.28622 0.59303 1.02205 1.95444 1.99785 2.73730 2.93295 3.33773 3.40534 3.41250 3.77564 3.87405 4.16044 4.37167 4.41947 4.53434 4.55614 4.71579 4.83631 5.12424 5.27220 5.32759 5.36970 5.39452 5.54595 5.66159 5.72893 5.74257 5.89033 5.95055 6.02263 6.05482 6.16788 6.21794 6.28386 6.45244 6.56464 6.62638 6.64211 6.71349 6.93411 6.98699 7.24384 7.33585 7.46025 7.52666 7.54699 7.68673 8.24848 9.06447 9.25457 9.69145 10.15973 11.19243 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.015495 B = 0.003730 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.645758 B = 7505.333690 C = 7771.940960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C -0.088 4.088 3 C 0.268 3.732 4 N -0.574 5.574 5 C -0.261 4.261 6 H 0.075 0.925 7 C 0.006 3.994 8 N -0.888 5.888 9 Si 0.906 3.094 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.280 1.280 13 C 0.173 3.827 14 C -0.064 4.064 15 C -0.103 4.103 16 C -0.097 4.097 17 C -0.096 4.096 18 C 0.027 3.973 19 C -0.112 4.112 20 C -0.088 4.088 21 C -0.131 4.131 22 C -0.071 4.071 23 C -0.030 4.030 24 C 0.257 3.743 25 N -0.415 5.415 26 C -0.100 4.100 27 C -0.100 4.100 28 H 0.185 0.815 29 H 0.100 0.900 30 H 0.034 0.966 31 H 0.255 0.745 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.108 0.892 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.920 -9.553 7.818 16.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 C -0.091 4.091 3 C 0.143 3.857 4 N -0.292 5.292 5 C -0.390 4.390 6 H 0.093 0.907 7 C -0.194 4.194 8 N -0.531 5.531 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.206 1.206 13 C 0.047 3.953 14 C -0.068 4.068 15 C -0.122 4.122 16 C -0.116 4.116 17 C -0.097 4.097 18 C 0.024 3.976 19 C -0.130 4.130 20 C -0.107 4.107 21 C -0.149 4.149 22 C -0.092 4.092 23 C -0.033 4.033 24 C -0.058 4.058 25 N -0.090 5.090 26 C -0.118 4.118 27 C -0.119 4.119 28 H 0.203 0.797 29 H 0.117 0.883 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.126 0.874 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.363 -9.549 8.533 15.864 hybrid contribution -0.757 1.406 -0.079 1.599 sum -10.121 -8.143 8.454 15.499 Atomic orbital electron populations 1.24019 0.95154 1.08583 1.04311 1.24100 0.95080 0.93403 0.96523 1.17872 0.83063 0.97318 0.87445 1.44329 1.73912 1.04645 1.06335 1.19257 1.22415 0.81959 1.15397 0.90736 1.25052 0.96339 0.97988 0.99972 1.70024 1.23749 1.30321 1.28991 0.86257 0.78287 0.83955 0.77935 1.21254 1.21753 1.20557 1.20120 0.91821 0.92028 0.91376 1.21174 0.99549 0.92907 0.93165 1.20822 0.93417 0.99132 0.98827 1.20942 0.97441 0.99248 0.93935 1.18462 0.92989 1.01397 0.96829 1.18921 0.93594 0.94417 0.90641 1.21291 0.90774 1.00063 1.00822 1.21333 0.98343 0.96743 0.94297 1.21059 0.97590 1.01580 0.94680 1.21078 0.90719 0.97527 0.99841 1.16116 0.87214 1.07952 0.92016 1.25522 0.92950 0.94001 0.93364 1.81197 1.10032 1.08519 1.09256 1.21008 0.93356 0.98156 0.99298 1.20863 0.97021 0.98844 0.95131 0.79742 0.88269 0.94834 0.93393 0.92301 0.93037 0.86679 0.86701 0.84657 0.85236 0.85179 0.85137 0.87439 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.67 18.97 29.55 0.56 -6.11 16 2 C -0.09 -2.06 10.13 -37.12 -0.38 -2.43 16 3 C 0.27 6.13 5.45 -6.83 -0.04 6.09 16 4 N -0.57 -13.45 2.49 -177.95 -0.44 -13.90 16 5 C -0.26 -6.76 9.68 -15.06 -0.15 -6.90 16 6 H 0.07 1.90 7.85 -52.49 -0.41 1.49 16 7 C 0.01 0.16 5.04 -17.43 -0.09 0.07 16 8 N -0.89 -24.54 9.14 55.49 0.51 -24.03 16 9 Si 0.91 21.26 29.58 -169.99 -5.03 16.23 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.17 3.43 5.82 -5.19 -0.03 3.40 16 14 C -0.06 -1.26 5.22 -104.55 -0.55 -1.80 16 15 C -0.10 -1.84 8.31 -39.64 -0.33 -2.17 16 16 C -0.10 -1.57 9.52 -39.23 -0.37 -1.95 16 17 C -0.10 -1.55 5.10 -104.92 -0.54 -2.09 16 18 C 0.03 0.36 5.50 -104.53 -0.58 -0.22 16 19 C -0.11 -1.22 9.51 -39.30 -0.37 -1.60 16 20 C -0.09 -0.74 10.02 -39.55 -0.40 -1.14 16 21 C -0.13 -1.01 10.02 -39.59 -0.40 -1.40 16 22 C -0.07 -0.65 9.75 -39.20 -0.38 -1.03 16 23 C -0.03 -0.36 5.74 -106.56 -0.61 -0.97 16 24 C 0.26 3.69 12.66 -22.49 -0.28 3.41 16 25 N -0.41 -6.77 18.53 41.82 0.77 -6.00 16 26 C -0.10 -1.79 8.44 -39.23 -0.33 -2.12 16 27 C -0.10 -1.95 9.68 -39.63 -0.38 -2.33 16 28 H 0.19 3.52 7.80 -54.09 -0.42 3.09 16 29 H 0.10 2.49 6.46 -51.93 -0.34 2.16 16 30 H 0.03 0.67 7.98 -51.93 -0.41 0.26 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.06 1.13 7.97 -51.93 -0.41 0.71 16 33 H 0.05 0.91 7.89 -51.93 -0.41 0.50 16 34 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 35 H 0.11 1.56 8.04 -52.48 -0.42 1.14 16 36 H 0.14 1.44 8.04 -52.48 -0.42 1.01 16 37 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 38 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 40 H 0.11 1.84 7.28 -52.48 -0.38 1.46 16 41 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 363.54 15.07 5.48 5.48 Total: -1.00 -30.29 363.54 -9.23 -39.52 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -4.88 Total: 3.99 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -5.64 Total: -21.30 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.84 Total: -43.92 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.29 -9.23 -39.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491384479.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.711 kcal (2) G-P(sol) polarization free energy of solvation -30.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds