Wall clock time and date at job start Tue Mar 31 2020 11:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47015 * 258.07787 * 3 2 1 5 5 C 1.36937 * 120.00006 * 264.22978 * 4 3 2 6 6 H 1.07997 * 120.00178 * 201.00314 * 5 4 3 7 7 C 1.38820 * 119.99802 * 20.99860 * 5 4 3 8 8 N 1.31618 * 119.99979 * 13.70086 * 7 5 4 9 9 Si 1.86797 * 119.99644 * 193.69853 * 7 5 4 10 10 H 1.48494 * 109.47270 * 84.98300 * 9 7 5 11 11 H 1.48500 * 109.46715 * 204.98238 * 9 7 5 12 12 H 1.48505 * 109.47345 * 324.98006 * 9 7 5 13 13 C 1.46494 * 119.99899 * 84.22736 * 4 3 2 14 14 C 1.50707 * 109.47202 * 269.99979 * 13 4 3 15 15 C 1.38332 * 119.86649 * 90.00234 * 14 13 4 16 16 C 1.37993 * 120.12942 * 179.97438 * 15 14 13 17 17 C 1.39431 * 119.86782 * 0.02562 * 16 15 14 18 18 C 1.48188 * 120.13127 * 179.97438 * 17 16 15 19 19 C 1.39199 * 120.20077 * 309.72107 * 18 17 16 20 20 C 1.38033 * 120.02344 * 179.69673 * 19 18 17 21 21 C 1.38521 * 120.44382 * 0.60619 * 20 19 18 22 22 C 1.37925 * 120.40811 * 359.67194 * 21 20 19 23 23 C 1.39559 * 119.96435 * 0.02562 * 22 21 20 24 24 C 1.43204 * 120.21992 * 179.97438 * 23 22 21 25 25 N 8.10317 * 85.86649 * 282.91898 * 2 1 3 26 26 C 1.39438 * 119.74172 * 359.97438 * 17 16 15 27 27 C 1.37991 * 119.86561 * 0.02562 * 26 17 16 28 28 H 4.40644 * 5.51337 * 179.97438 * 4 1 2 29 29 H 1.08994 * 109.47341 * 138.08024 * 3 2 1 30 30 H 1.08998 * 109.47393 * 18.07182 * 3 2 1 31 31 H 0.96995 * 119.99697 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.47073 * 150.00154 * 13 4 3 33 33 H 1.08992 * 109.47348 * 30.00171 * 13 4 3 34 34 H 1.08002 * 119.93526 * 359.95724 * 15 14 13 35 35 H 1.08003 * 120.06780 * 179.72394 * 16 15 14 36 36 H 1.08004 * 119.98645 * 359.97438 * 19 18 17 37 37 H 1.08003 * 119.78134 * 180.29540 * 20 19 18 38 38 H 1.08000 * 119.80049 * 179.69439 * 21 20 19 39 39 H 1.08006 * 120.01822 * 180.02562 * 22 21 20 40 40 H 1.08004 * 120.06882 * 179.97438 * 26 17 16 41 41 H 1.07998 * 119.93864 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2862 1.3515 5 6 3.4743 1.5660 1.7005 6 1 4.1336 1.7403 2.5379 7 6 2.9715 2.6393 0.9778 8 7 1.9710 2.4589 0.1418 9 14 3.7150 4.3395 1.1918 10 1 4.8971 4.4783 0.3039 11 1 2.7056 5.3693 0.8369 12 1 4.1332 4.5227 2.6050 13 6 3.2585 -0.7973 2.3295 14 6 1.9682 -0.9323 3.0965 15 6 0.9756 -1.7763 2.6316 16 6 -0.2077 -1.9044 3.3298 17 6 -0.4020 -1.1807 4.5056 18 6 -1.6708 -1.3135 5.2598 19 6 -2.8918 -1.1809 4.6047 20 6 -4.0714 -1.3115 5.3095 21 6 -4.0511 -1.5620 6.6718 22 6 -2.8514 -1.6910 7.3400 23 6 -1.6486 -1.5684 6.6430 24 6 -0.3999 -1.7007 7.3315 25 7 0.5899 -1.8069 7.8775 26 6 0.6021 -0.3316 4.9692 27 6 1.7812 -0.2117 4.2625 28 1 -1.0500 0.0002 -0.0002 29 1 3.0090 0.7654 -0.6865 30 1 3.0098 -0.9761 -0.3188 31 1 1.6200 3.2089 -0.3634 32 1 4.0702 -0.5712 3.0210 33 1 3.4726 -1.7319 1.8112 34 1 1.1270 -2.3358 1.7203 35 1 -0.9838 -2.5603 2.9636 36 1 -2.9163 -0.9803 3.5438 37 1 -5.0167 -1.2126 4.7965 38 1 -4.9803 -1.6574 7.2139 39 1 -2.8429 -1.8867 8.4021 40 1 0.4570 0.2318 5.8792 41 1 2.5599 0.4453 4.6207 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491384479.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:21 Heat of formation + Delta-G solvation = 151.592869 kcal Electronic energy + Delta-G solvation = -24738.298541 eV Core-core repulsion = 21357.146868 eV Total energy + Delta-G solvation = -3381.151673 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.127 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.97947 -39.58521 -37.68117 -37.47448 -34.33069 -33.37456 -32.70142 -32.33258 -31.68710 -30.43443 -27.96398 -27.25356 -24.92059 -24.29178 -23.28320 -22.89398 -21.52965 -19.75190 -19.27444 -18.21285 -17.75689 -17.07576 -16.57927 -16.33196 -15.94462 -15.86548 -15.57181 -15.20015 -15.16687 -14.91858 -14.72745 -14.29074 -14.14263 -13.92678 -13.79017 -13.69146 -13.32662 -13.21575 -13.00529 -12.78655 -12.67182 -12.55260 -12.28540 -12.18452 -12.07668 -11.78694 -11.71850 -10.81940 -10.69129 -10.23352 -10.11190 -9.90735 -9.74431 -9.12324 -8.87875 -7.81329 -5.28428 -0.31190 0.17465 0.58443 0.75400 1.45628 1.47046 1.53416 1.64226 1.98270 2.40982 2.58480 2.71633 2.82318 2.90829 3.01501 3.32971 3.56891 3.91011 3.95942 4.03070 4.09137 4.16728 4.22518 4.27237 4.44162 4.50102 4.53965 4.57231 4.76411 4.80156 4.89596 4.99811 5.04777 5.14289 5.20203 5.35862 5.37603 5.40085 5.52502 5.57733 5.63463 5.64452 5.76604 5.87968 5.94181 6.15380 6.31453 6.45382 7.11983 7.50282 7.81319 8.24106 9.17982 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.015495 B = 0.003730 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.645758 B = 7505.333690 C = 7771.940960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.115 4.115 3 C 0.269 3.731 4 N -0.587 5.587 5 C -0.264 4.264 6 H 0.069 0.931 7 C -0.040 4.040 8 N -0.910 5.910 9 Si 0.959 3.041 10 H -0.282 1.282 11 H -0.299 1.299 12 H -0.279 1.279 13 C 0.174 3.826 14 C -0.085 4.085 15 C -0.105 4.105 16 C -0.098 4.098 17 C -0.083 4.083 18 C 0.000 4.000 19 C -0.118 4.118 20 C -0.076 4.076 21 C -0.114 4.114 22 C -0.065 4.065 23 C -0.048 4.048 24 C 0.272 3.728 25 N -0.464 5.464 26 C -0.115 4.115 27 C -0.121 4.121 28 H 0.212 0.788 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.246 0.754 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.123 0.877 35 H 0.146 0.854 36 H 0.137 0.863 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.153 0.847 40 H 0.106 0.894 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.421 -10.774 8.665 19.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 C -0.118 4.118 3 C 0.144 3.856 4 N -0.306 5.306 5 C -0.394 4.394 6 H 0.087 0.913 7 C -0.236 4.236 8 N -0.555 5.555 9 Si 0.788 3.212 10 H -0.209 1.209 11 H -0.226 1.226 12 H -0.204 1.204 13 C 0.048 3.952 14 C -0.088 4.088 15 C -0.124 4.124 16 C -0.116 4.116 17 C -0.084 4.084 18 C -0.003 4.003 19 C -0.136 4.136 20 C -0.095 4.095 21 C -0.132 4.132 22 C -0.085 4.085 23 C -0.051 4.051 24 C -0.042 4.042 25 N -0.140 5.140 26 C -0.133 4.133 27 C -0.140 4.140 28 H 0.229 0.771 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.141 0.859 35 H 0.163 0.837 36 H 0.155 0.845 37 H 0.181 0.819 38 H 0.187 0.813 39 H 0.171 0.829 40 H 0.125 0.875 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.854 -10.799 9.405 19.243 hybrid contribution 0.153 1.663 -0.218 1.684 sum -12.701 -9.136 9.188 18.144 Atomic orbital electron populations 1.24695 0.96012 1.07548 1.03284 1.24333 0.95651 0.94350 0.97486 1.17785 0.83320 0.97667 0.86783 1.44343 1.74381 1.04434 1.07418 1.19429 1.21941 0.83351 1.14676 0.91284 1.25593 0.97061 1.00533 1.00435 1.70190 1.25006 1.30213 1.30082 0.85418 0.77371 0.80653 0.77718 1.20852 1.22627 1.20409 1.20163 0.92178 0.91801 0.91024 1.21082 0.99655 0.94381 0.93713 1.20974 0.93606 0.98719 0.99119 1.21289 0.97476 0.99195 0.93647 1.18791 0.93671 0.99326 0.96572 1.18821 0.92997 0.97462 0.91007 1.21400 0.90781 1.00226 1.01146 1.21740 0.98577 0.94461 0.94680 1.21548 0.98376 0.98732 0.94524 1.21414 0.89946 0.96154 1.00976 1.16269 0.87293 1.09797 0.91749 1.26019 0.93066 0.92650 0.92488 1.81198 1.11329 1.10543 1.10891 1.21086 0.93670 0.99135 0.99413 1.20904 0.97644 0.99378 0.96052 0.77065 0.91132 0.92057 0.94433 0.92592 0.90836 0.85903 0.83668 0.84520 0.81916 0.81256 0.82910 0.87544 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -12.81 18.97 74.32 1.41 -11.39 16 2 C -0.12 -5.37 10.13 31.12 0.32 -5.06 16 3 C 0.27 12.48 5.45 84.57 0.46 12.94 16 4 N -0.59 -28.04 2.49 -716.91 -1.78 -29.83 16 5 C -0.26 -14.04 9.68 84.04 0.81 -13.23 16 6 H 0.07 3.65 7.85 -2.91 -0.02 3.63 16 7 C -0.04 -2.15 5.04 84.86 0.43 -1.72 16 8 N -0.91 -51.47 9.14 21.65 0.20 -51.27 16 9 Si 0.96 44.85 29.58 68.60 2.03 46.88 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 13 C 0.17 7.02 5.82 85.64 0.50 7.52 16 14 C -0.09 -3.39 5.22 -19.81 -0.10 -3.50 16 15 C -0.11 -3.71 8.31 22.23 0.18 -3.52 16 16 C -0.10 -3.03 9.52 22.50 0.21 -2.82 16 17 C -0.08 -2.63 5.10 -20.06 -0.10 -2.73 16 18 C 0.00 -0.01 5.50 -19.81 -0.11 -0.11 16 19 C -0.12 -2.18 9.51 22.45 0.21 -1.97 16 20 C -0.08 -0.88 10.02 22.29 0.22 -0.66 16 21 C -0.11 -1.12 10.02 22.26 0.22 -0.89 16 22 C -0.06 -0.93 9.75 22.51 0.22 -0.71 16 23 C -0.05 -1.07 5.74 -21.12 -0.12 -1.20 16 24 C 0.27 7.75 12.66 88.34 1.12 8.86 16 25 N -0.46 -15.46 18.53 19.00 0.35 -15.11 16 26 C -0.11 -4.22 8.44 22.50 0.19 -4.03 16 27 C -0.12 -4.94 9.68 22.24 0.22 -4.72 16 28 H 0.21 7.58 7.80 -4.42 -0.03 7.55 16 29 H 0.07 3.66 6.46 -2.39 -0.02 3.64 16 30 H 0.06 2.43 7.98 -2.39 -0.02 2.41 16 31 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 32 H 0.06 2.23 7.97 -2.39 -0.02 2.21 16 33 H 0.07 2.58 7.89 -2.39 -0.02 2.56 16 34 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 35 H 0.15 3.53 8.04 -2.91 -0.02 3.51 16 36 H 0.14 2.47 8.04 -2.91 -0.02 2.44 16 37 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 38 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 39 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 40 H 0.11 3.82 7.28 -2.91 -0.02 3.79 16 41 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -68.30 363.54 8.12 -60.17 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 1.04 Total: 18.10 kcal Atomic # 6 Polarization: -35.23 SS G_CDS: 6.29 Total: -28.94 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -1.23 Total: -96.21 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -68.30 8.12 -60.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491384479.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.767 kcal (2) G-P(sol) polarization free energy of solvation -68.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds