Wall clock time and date at job start Tue Mar 31 2020 10:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37812 * 119.92654 * 2 1 4 4 C 1.39877 * 119.85069 * 180.02562 * 3 2 1 5 5 C 1.47106 * 120.14338 * 179.97438 * 4 3 2 6 6 C 1.34893 * 120.00143 * 131.93630 * 5 4 3 7 7 C 1.46344 * 119.99783 * 348.77609 * 6 5 4 8 8 O 1.21706 * 120.00185 * 353.28165 * 7 6 5 9 9 N 1.34770 * 119.99911 * 173.27683 * 7 6 5 10 10 C 1.46494 * 120.00375 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.47050 * 90.00110 * 10 9 7 12 12 H 1.07998 * 119.99895 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00238 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00072 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 119.99884 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.46829 * 90.00003 * 15 13 11 17 17 H 1.48495 * 109.47278 * 210.00155 * 15 13 11 18 18 H 1.48507 * 109.46977 * 330.00371 * 15 13 11 19 19 C 1.46503 * 119.99847 * 0.02562 * 9 7 6 20 20 C 1.53004 * 109.47204 * 90.00069 * 19 9 7 21 21 C 1.47202 * 109.47120 * 179.97438 * 20 19 9 22 22 N 8.80102 * 159.76575 * 250.66930 * 3 1 2 23 23 C 1.39919 * 119.71497 * 0.02562 * 4 3 2 24 24 C 1.37765 * 119.85073 * 0.02562 * 23 4 3 25 25 C 1.38663 * 119.92537 * 180.02562 * 2 1 3 26 26 F 1.35095 * 119.85596 * 359.72104 * 25 2 1 27 27 H 1.09002 * 109.46762 * 269.97969 * 1 2 3 28 28 H 1.09001 * 109.47044 * 29.97635 * 1 2 3 29 29 H 1.08998 * 109.47469 * 149.97474 * 1 2 3 30 30 H 1.08000 * 120.07331 * 359.97438 * 3 2 1 31 31 H 1.08009 * 120.00182 * 311.93647 * 5 4 3 32 32 H 1.07998 * 120.00066 * 168.78123 * 6 5 4 33 33 H 1.09001 * 109.47817 * 210.00265 * 10 9 7 34 34 H 1.08997 * 109.47040 * 330.00818 * 10 9 7 35 35 H 0.97003 * 120.00359 * 179.97438 * 14 13 11 36 36 H 1.09003 * 109.47053 * 209.99569 * 19 9 7 37 37 H 1.08995 * 109.47305 * 329.99592 * 19 9 7 38 38 H 1.09003 * 109.46707 * 299.99712 * 20 19 9 39 39 H 1.08995 * 109.47379 * 59.99568 * 20 19 9 40 40 H 1.08002 * 120.07516 * 179.97438 * 23 4 3 41 41 H 1.08001 * 119.92846 * 179.97438 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1944 0.0000 4 6 3.5933 1.1925 -0.0005 5 6 4.3337 2.4637 -0.0011 6 6 5.3481 2.6538 0.8675 7 6 5.5571 1.7100 1.9662 8 8 4.7473 0.8248 2.1705 9 7 6.6465 1.8210 2.7518 10 6 6.8562 0.8760 3.8514 11 6 7.6465 -0.3066 3.3535 12 1 7.9615 -0.3497 2.3214 13 6 7.9674 -1.3337 4.2157 14 7 8.6575 -2.3654 3.7813 15 14 7.4232 -1.2588 6.0011 16 1 6.0875 -1.8932 6.1384 17 1 8.4045 -1.9827 6.8485 18 1 7.3448 0.1591 6.4357 19 6 7.6212 2.8868 2.5062 20 6 7.2312 4.1296 3.3089 21 6 8.2108 5.2003 3.0626 22 7 8.9661 6.0269 2.8723 23 6 4.2853 -0.0236 -0.0016 24 6 3.5858 -1.2105 -0.0027 25 6 2.1988 -1.2018 -0.0005 26 9 1.5188 -2.3691 0.0046 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8897 -0.5142 30 1 1.6545 2.1297 -0.0004 31 1 4.0651 3.2448 -0.6970 32 1 6.0060 3.5024 0.7520 33 1 7.4055 1.3682 4.6539 34 1 5.8912 0.5358 4.2270 35 1 8.8837 -3.0878 4.3880 36 1 8.6116 2.5515 2.8141 37 1 7.6340 3.1298 1.4437 38 1 6.2408 4.4649 3.0010 39 1 7.2184 3.8867 4.3714 40 1 5.3652 -0.0318 -0.0025 41 1 4.1187 -2.1499 -0.0039 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493500650.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:21 Heat of formation + Delta-G solvation = -2.423353 kcal Electronic energy + Delta-G solvation = -25671.438952 eV Core-core repulsion = 21852.839410 eV Total energy + Delta-G solvation = -3818.599542 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.66289 -39.82664 -38.56558 -36.93731 -35.44475 -33.87852 -32.80909 -32.27148 -31.02861 -29.66139 -27.94786 -26.72678 -24.34095 -23.86771 -22.41834 -21.92616 -20.15283 -18.11043 -17.66121 -17.38885 -17.09938 -16.83319 -16.19994 -15.77235 -15.44100 -14.78202 -14.62954 -14.46906 -14.04725 -14.01646 -13.57562 -13.36941 -13.31666 -13.12246 -12.99796 -12.88609 -12.62188 -12.51578 -12.38120 -12.17714 -11.89446 -11.73498 -11.62194 -11.29910 -11.08619 -10.89478 -10.79199 -10.58232 -10.25289 -9.65087 -9.56103 -9.21886 -8.65149 -8.63459 -7.88254 -7.80174 -6.14531 -4.14007 0.86592 1.55533 1.88718 2.67179 2.74513 3.24659 3.29906 3.33189 3.55780 3.75356 3.86968 4.15176 4.34079 4.49848 4.70919 4.84919 4.89676 4.97810 5.03736 5.08349 5.19361 5.27430 5.36486 5.39302 5.50318 5.58087 5.69559 5.72481 5.83604 5.98010 6.06636 6.10153 6.23949 6.30199 6.45853 6.55296 6.60094 6.74971 6.87543 7.15040 7.18995 7.50359 7.53501 8.07636 8.39077 8.82519 8.89660 9.45414 10.98590 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.009411 B = 0.004839 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2974.555333 B = 5784.475278 C = 8090.794703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.135 4.135 3 C -0.080 4.080 4 C -0.066 4.066 5 C -0.038 4.038 6 C -0.203 4.203 7 C 0.531 3.469 8 O -0.518 6.518 9 N -0.587 5.587 10 C 0.215 3.785 11 C -0.530 4.530 12 H 0.075 0.925 13 C 0.075 3.925 14 N -0.895 5.895 15 Si 0.873 3.127 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.265 1.265 19 C 0.117 3.883 20 C -0.051 4.051 21 C 0.216 3.784 22 N -0.443 5.443 23 C -0.016 4.016 24 C -0.150 4.150 25 C 0.099 3.901 26 F -0.144 7.144 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.126 0.874 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.031 0.969 34 H 0.040 0.960 35 H 0.265 0.735 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.128 0.872 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.595 10.542 -7.347 17.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.136 4.136 3 C -0.098 4.098 4 C -0.067 4.067 5 C -0.058 4.058 6 C -0.223 4.223 7 C 0.320 3.680 8 O -0.396 6.396 9 N -0.317 5.317 10 C 0.094 3.906 11 C -0.568 4.568 12 H 0.093 0.907 13 C -0.128 4.128 14 N -0.534 5.534 15 Si 0.700 3.300 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.190 1.190 19 C -0.009 4.009 20 C -0.093 4.093 21 C -0.102 4.102 22 N -0.121 5.121 23 C -0.034 4.034 24 C -0.169 4.169 25 C 0.080 3.920 26 F -0.123 7.123 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.144 0.856 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.127 0.873 39 H 0.132 0.868 40 H 0.145 0.855 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.827 11.052 -7.422 17.159 hybrid contribution -0.335 -0.617 1.236 1.422 sum -11.162 10.435 -6.186 16.485 Atomic orbital electron populations 1.20650 0.90683 1.02671 1.02468 1.19623 0.96451 0.91910 1.05617 1.20797 0.92711 0.96692 0.99576 1.18856 0.92942 0.93065 1.01812 1.22261 0.92769 0.94615 0.96123 1.23330 0.99854 1.01905 0.97250 1.18305 0.81803 0.84758 0.83095 1.90885 1.43803 1.34246 1.70654 1.47842 1.21203 1.29642 1.33033 1.19713 0.97670 0.88445 0.84723 1.21273 1.34208 1.02517 0.98804 0.90675 1.24836 0.94507 0.94990 0.98486 1.69882 1.38724 1.08923 1.35822 0.86902 0.79015 0.78745 0.85314 1.19940 1.21130 1.19004 1.21355 0.94754 0.85479 0.99358 1.19916 0.94869 0.89725 1.04753 1.29070 0.94026 0.94027 0.93096 1.81210 1.10407 1.11340 1.09098 1.20986 0.99829 0.90372 0.92230 1.20976 0.91902 1.00020 1.04023 1.17664 0.89966 0.80677 1.03712 1.91438 1.80227 1.46670 1.93955 0.91220 0.91407 0.91603 0.85571 0.84869 0.85032 0.95139 0.94233 0.92513 0.88608 0.90103 0.87321 0.86774 0.85455 0.84880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 9.83 36.01 0.35 -0.79 16 2 C -0.14 -1.84 5.88 -104.62 -0.62 -2.46 16 3 C -0.08 -1.02 9.44 -39.12 -0.37 -1.38 16 4 C -0.07 -0.93 4.34 -105.06 -0.46 -1.39 16 5 C -0.04 -0.42 9.78 -37.17 -0.36 -0.79 16 6 C -0.20 -2.43 9.05 -37.51 -0.34 -2.77 16 7 C 0.53 8.99 6.82 -13.00 -0.09 8.90 16 8 O -0.52 -10.82 12.05 5.18 0.06 -10.76 16 9 N -0.59 -9.93 2.46 -176.73 -0.43 -10.36 16 10 C 0.21 4.61 4.23 -5.20 -0.02 4.58 16 11 C -0.53 -13.94 9.94 -34.44 -0.34 -14.28 16 12 H 0.08 2.18 8.06 -52.49 -0.42 1.75 16 13 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 14 N -0.90 -26.48 13.96 55.43 0.77 -25.71 16 15 Si 0.87 20.52 27.47 -169.99 -4.67 15.85 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.27 -5.75 6.54 56.52 0.37 -5.38 16 19 C 0.12 1.43 5.03 -4.04 -0.02 1.41 16 20 C -0.05 -0.47 6.03 -29.52 -0.18 -0.65 16 21 C 0.22 2.41 15.43 -20.77 -0.32 2.09 16 22 N -0.44 -6.18 18.54 42.14 0.78 -5.40 16 23 C -0.02 -0.26 6.78 -39.13 -0.27 -0.52 16 24 C -0.15 -2.49 10.01 -39.58 -0.40 -2.88 16 25 C 0.10 1.56 7.25 -39.25 -0.28 1.27 16 26 F -0.14 -2.29 16.46 2.25 0.04 -2.25 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 29 H 0.06 0.68 7.63 -51.93 -0.40 0.28 16 30 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 32 H 0.13 1.13 6.33 -52.49 -0.33 0.80 16 33 H 0.03 0.61 7.13 -51.93 -0.37 0.24 16 34 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.10 1.29 8.07 -51.93 -0.42 0.87 16 37 H 0.08 0.82 6.19 -51.93 -0.32 0.50 16 38 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.13 2.19 7.46 -52.49 -0.39 1.80 16 41 H 0.13 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 359.68 15.07 5.42 5.42 Total: -1.00 -33.39 359.68 -6.96 -40.35 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.13 Total: 0.55 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -3.80 Total: -7.70 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: 1.12 Total: -41.47 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.06 Total: -10.76 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.67 Total: 15.85 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.39 -6.96 -40.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493500650.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.932 kcal (2) G-P(sol) polarization free energy of solvation -33.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds