Wall clock time and date at job start Tue Mar 31 2020 10:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37812 * 119.92654 * 2 1 4 4 C 1.39877 * 119.85069 * 180.02562 * 3 2 1 5 5 C 1.47106 * 120.14338 * 179.97438 * 4 3 2 6 6 C 1.34893 * 120.00143 * 131.93630 * 5 4 3 7 7 C 1.46344 * 119.99783 * 348.77609 * 6 5 4 8 8 O 1.21706 * 120.00185 * 353.28165 * 7 6 5 9 9 N 1.34770 * 119.99911 * 173.27683 * 7 6 5 10 10 C 1.46494 * 120.00375 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.47050 * 90.00110 * 10 9 7 12 12 H 1.07998 * 119.99895 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00238 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00072 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 119.99884 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.46829 * 90.00003 * 15 13 11 17 17 H 1.48495 * 109.47278 * 210.00155 * 15 13 11 18 18 H 1.48507 * 109.46977 * 330.00371 * 15 13 11 19 19 C 1.46503 * 119.99847 * 0.02562 * 9 7 6 20 20 C 1.53004 * 109.47204 * 90.00069 * 19 9 7 21 21 C 1.47202 * 109.47120 * 179.97438 * 20 19 9 22 22 N 8.80102 * 159.76575 * 250.66930 * 3 1 2 23 23 C 1.39919 * 119.71497 * 0.02562 * 4 3 2 24 24 C 1.37765 * 119.85073 * 0.02562 * 23 4 3 25 25 C 1.38663 * 119.92537 * 180.02562 * 2 1 3 26 26 F 1.35095 * 119.85596 * 359.72104 * 25 2 1 27 27 H 1.09002 * 109.46762 * 269.97969 * 1 2 3 28 28 H 1.09001 * 109.47044 * 29.97635 * 1 2 3 29 29 H 1.08998 * 109.47469 * 149.97474 * 1 2 3 30 30 H 1.08000 * 120.07331 * 359.97438 * 3 2 1 31 31 H 1.08009 * 120.00182 * 311.93647 * 5 4 3 32 32 H 1.07998 * 120.00066 * 168.78123 * 6 5 4 33 33 H 1.09001 * 109.47817 * 210.00265 * 10 9 7 34 34 H 1.08997 * 109.47040 * 330.00818 * 10 9 7 35 35 H 0.97003 * 120.00359 * 179.97438 * 14 13 11 36 36 H 1.09003 * 109.47053 * 209.99569 * 19 9 7 37 37 H 1.08995 * 109.47305 * 329.99592 * 19 9 7 38 38 H 1.09003 * 109.46707 * 299.99712 * 20 19 9 39 39 H 1.08995 * 109.47379 * 59.99568 * 20 19 9 40 40 H 1.08002 * 120.07516 * 179.97438 * 23 4 3 41 41 H 1.08001 * 119.92846 * 179.97438 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1944 0.0000 4 6 3.5933 1.1925 -0.0005 5 6 4.3337 2.4637 -0.0011 6 6 5.3481 2.6538 0.8675 7 6 5.5571 1.7100 1.9662 8 8 4.7473 0.8248 2.1705 9 7 6.6465 1.8210 2.7518 10 6 6.8562 0.8760 3.8514 11 6 7.6465 -0.3066 3.3535 12 1 7.9615 -0.3497 2.3214 13 6 7.9674 -1.3337 4.2157 14 7 8.6575 -2.3654 3.7813 15 14 7.4232 -1.2588 6.0011 16 1 6.0875 -1.8932 6.1384 17 1 8.4045 -1.9827 6.8485 18 1 7.3448 0.1591 6.4357 19 6 7.6212 2.8868 2.5062 20 6 7.2312 4.1296 3.3089 21 6 8.2108 5.2003 3.0626 22 7 8.9661 6.0269 2.8723 23 6 4.2853 -0.0236 -0.0016 24 6 3.5858 -1.2105 -0.0027 25 6 2.1988 -1.2018 -0.0005 26 9 1.5188 -2.3691 0.0046 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8897 -0.5142 30 1 1.6545 2.1297 -0.0004 31 1 4.0651 3.2448 -0.6970 32 1 6.0060 3.5024 0.7520 33 1 7.4055 1.3682 4.6539 34 1 5.8912 0.5358 4.2270 35 1 8.8837 -3.0878 4.3880 36 1 8.6116 2.5515 2.8141 37 1 7.6340 3.1298 1.4437 38 1 6.2408 4.4649 3.0010 39 1 7.2184 3.8867 4.3714 40 1 5.3652 -0.0318 -0.0025 41 1 4.1187 -2.1499 -0.0039 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493500650.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:20 Heat of formation + Delta-G solvation = -21.950303 kcal Electronic energy + Delta-G solvation = -25672.285704 eV Core-core repulsion = 21852.839410 eV Total energy + Delta-G solvation = -3819.446294 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.88531 -41.04761 -39.72132 -37.94582 -36.70771 -35.01322 -34.65849 -33.37023 -32.27628 -30.84286 -29.49802 -27.73646 -25.55638 -25.17497 -23.65781 -23.22712 -21.38080 -19.29515 -19.04499 -18.57025 -18.42380 -18.17954 -17.35807 -17.07916 -16.64941 -16.26706 -15.75130 -15.65149 -15.45143 -15.07964 -14.80081 -14.49639 -14.38031 -14.33618 -14.25211 -14.02722 -13.92121 -13.70607 -13.50096 -13.31313 -13.11867 -13.02410 -12.74266 -12.64300 -12.40407 -12.26564 -11.98003 -11.93636 -11.82057 -11.68267 -10.77734 -10.64077 -10.48367 -9.78550 -9.30040 -8.93903 -8.28271 -6.31622 -0.19813 0.41951 0.82943 1.35948 1.40111 1.46923 1.76809 1.89083 2.34692 2.36277 2.57573 2.75799 3.07674 3.22220 3.36019 3.75881 3.85301 3.87639 3.93063 4.14194 4.16979 4.30824 4.44682 4.53197 4.62854 4.69688 4.79922 4.85282 4.88501 4.91249 5.01524 5.08533 5.11433 5.18098 5.24558 5.32656 5.37536 5.47196 5.53876 5.64699 5.75506 6.04337 6.30932 6.65458 6.71584 6.80475 7.29640 7.56700 8.88546 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.009411 B = 0.004839 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2974.555333 B = 5784.475278 C = 8090.794703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.133 4.133 3 C -0.074 4.074 4 C -0.070 4.070 5 C -0.021 4.021 6 C -0.207 4.207 7 C 0.521 3.479 8 O -0.568 6.568 9 N -0.592 5.592 10 C 0.224 3.776 11 C -0.525 4.525 12 H 0.030 0.970 13 C 0.010 3.990 14 N -0.950 5.950 15 Si 0.939 3.061 16 H -0.282 1.282 17 H -0.284 1.284 18 H -0.227 1.227 19 C 0.112 3.888 20 C -0.036 4.036 21 C 0.246 3.754 22 N -0.493 5.493 23 C -0.037 4.037 24 C -0.177 4.177 25 C 0.072 3.928 26 F -0.152 7.152 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.170 0.830 31 H 0.188 0.812 32 H 0.175 0.825 33 H 0.055 0.945 34 H 0.022 0.978 35 H 0.264 0.736 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.142 0.858 39 H 0.124 0.876 40 H 0.103 0.897 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.712 14.716 -7.062 21.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.133 4.133 3 C -0.092 4.092 4 C -0.070 4.070 5 C -0.040 4.040 6 C -0.227 4.227 7 C 0.313 3.687 8 O -0.449 6.449 9 N -0.322 5.322 10 C 0.102 3.898 11 C -0.564 4.564 12 H 0.049 0.951 13 C -0.188 4.188 14 N -0.590 5.590 15 Si 0.763 3.237 16 H -0.209 1.209 17 H -0.210 1.210 18 H -0.149 1.149 19 C -0.013 4.013 20 C -0.077 4.077 21 C -0.072 4.072 22 N -0.171 5.171 23 C -0.056 4.056 24 C -0.196 4.196 25 C 0.053 3.947 26 F -0.131 7.131 27 H 0.093 0.907 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.188 0.812 31 H 0.205 0.795 32 H 0.193 0.807 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.124 0.876 38 H 0.160 0.840 39 H 0.142 0.858 40 H 0.121 0.879 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.926 15.288 -7.152 21.259 hybrid contribution 0.313 -1.983 1.023 2.253 sum -12.613 13.305 -6.129 19.331 Atomic orbital electron populations 1.20741 0.88194 1.04206 1.03178 1.20090 0.98315 0.91225 1.03714 1.21284 0.92226 0.97943 0.97704 1.19252 0.94013 0.93422 1.00319 1.22743 0.91083 0.93959 0.96214 1.23370 1.01212 1.02056 0.96024 1.19216 0.80903 0.84854 0.83745 1.90872 1.45604 1.36528 1.71919 1.47794 1.22369 1.29883 1.32130 1.19333 0.95854 0.87927 0.86723 1.21601 1.33646 1.04424 0.96759 0.95145 1.25799 0.94727 0.94607 1.03637 1.70056 1.41123 1.10197 1.37661 0.85842 0.77689 0.80787 0.79401 1.20850 1.20996 1.14947 1.21539 0.92868 0.85296 1.01566 1.19869 0.95632 0.87438 1.04791 1.29202 0.93064 0.93313 0.91573 1.81259 1.11903 1.13132 1.10770 1.20882 0.98773 0.91711 0.94201 1.20997 0.92924 0.99838 1.05841 1.17897 0.89715 0.81573 1.05515 1.91406 1.80163 1.47266 1.94215 0.90750 0.88195 0.91829 0.81235 0.79492 0.80745 0.92677 0.95951 0.92670 0.90263 0.87586 0.84022 0.85834 0.87891 0.86693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 9.83 71.24 0.70 -1.27 16 2 C -0.13 -3.42 5.88 -19.86 -0.12 -3.54 16 3 C -0.07 -1.65 9.44 22.57 0.21 -1.44 16 4 C -0.07 -1.82 4.34 -20.15 -0.09 -1.91 16 5 C -0.02 -0.37 9.78 23.83 0.23 -0.14 16 6 C -0.21 -4.15 9.05 23.61 0.21 -3.93 16 7 C 0.52 16.96 6.82 86.35 0.59 17.55 16 8 O -0.57 -24.00 12.05 -4.37 -0.05 -24.05 16 9 N -0.59 -19.24 2.46 -831.28 -2.04 -21.28 16 10 C 0.22 9.50 4.23 85.63 0.36 9.86 16 11 C -0.53 -28.72 9.94 25.60 0.25 -28.47 16 12 H 0.03 1.88 8.06 -2.91 -0.02 1.85 16 13 C 0.01 0.55 5.47 84.66 0.46 1.02 16 14 N -0.95 -59.02 13.96 21.45 0.30 -58.72 16 15 Si 0.94 42.72 27.47 68.60 1.88 44.60 16 16 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.23 -8.83 6.54 99.48 0.65 -8.18 16 19 C 0.11 2.45 5.03 86.38 0.43 2.88 16 20 C -0.04 -0.52 6.03 28.79 0.17 -0.35 16 21 C 0.25 4.66 15.43 89.45 1.38 6.04 16 22 N -0.49 -12.62 18.54 20.00 0.37 -12.25 16 23 C -0.04 -1.27 6.78 22.57 0.15 -1.12 16 24 C -0.18 -6.39 10.01 22.27 0.22 -6.16 16 25 C 0.07 2.36 7.25 22.48 0.16 2.52 16 26 F -0.15 -5.06 16.46 44.97 0.74 -4.32 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.10 1.21 8.08 -2.39 -0.02 1.19 16 29 H 0.06 1.21 7.63 -2.39 -0.02 1.19 16 30 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 31 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 32 H 0.18 1.96 6.33 -2.91 -0.02 1.94 16 33 H 0.06 2.08 7.13 -2.39 -0.02 2.06 16 34 H 0.02 1.04 6.85 -2.39 -0.02 1.02 16 35 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.08 2.02 8.07 -2.39 -0.02 2.00 16 37 H 0.11 1.78 6.19 -2.39 -0.01 1.76 16 38 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.10 3.88 7.46 -2.91 -0.02 3.86 16 41 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -81.03 359.68 7.55 -73.48 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 1.00 Total: 10.98 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 5.35 Total: -8.44 kcal Atomic # 7 Polarization: -90.88 SS G_CDS: -1.37 Total: -92.25 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.05 Total: -24.05 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.74 Total: -4.32 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.88 Total: 44.60 kcal Total: -81.03 7.55 -73.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493500650.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.528 kcal (2) G-P(sol) polarization free energy of solvation -81.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds