Wall clock time and date at job start Tue Mar 31 2020 10:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37814 * 119.92293 * 2 1 4 4 C 1.39880 * 119.84809 * 179.97438 * 3 2 1 5 5 C 1.47108 * 120.13975 * 179.97438 * 4 3 2 6 6 C 1.34894 * 119.99950 * 179.97438 * 5 4 3 7 7 C 1.46346 * 119.99893 * 179.72799 * 6 5 4 8 8 O 1.21703 * 119.99968 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99963 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00210 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47034 * 89.99910 * 10 9 7 12 12 H 1.08002 * 119.99777 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00353 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99696 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00143 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47267 * 90.00230 * 15 13 11 17 17 H 1.48509 * 109.46921 * 210.00209 * 15 13 11 18 18 H 1.48501 * 109.47211 * 329.99927 * 15 13 11 19 19 C 1.46505 * 119.99963 * 359.97438 * 9 7 6 20 20 C 1.52997 * 109.47057 * 90.00033 * 19 9 7 21 21 C 1.47200 * 109.47020 * 180.02562 * 20 19 9 22 22 N 8.65909 * 170.33761 * 259.42342 * 2 1 3 23 23 C 1.39909 * 119.71687 * 0.24984 * 4 3 2 24 24 C 1.37775 * 119.85342 * 359.44986 * 23 4 3 25 25 C 1.38664 * 119.92941 * 179.97438 * 2 1 3 26 26 F 1.35100 * 119.85524 * 0.02562 * 25 2 1 27 27 H 1.09001 * 109.47172 * 90.00378 * 1 2 3 28 28 H 1.09008 * 109.47247 * 209.99830 * 1 2 3 29 29 H 1.08993 * 109.47946 * 330.00252 * 1 2 3 30 30 H 1.07996 * 120.07317 * 359.97085 * 3 2 1 31 31 H 1.08000 * 120.00537 * 359.97438 * 5 4 3 32 32 H 1.07997 * 120.00240 * 0.02562 * 6 5 4 33 33 H 1.09003 * 109.47177 * 209.99968 * 10 9 7 34 34 H 1.09001 * 109.46870 * 330.00304 * 10 9 7 35 35 H 0.96996 * 120.00019 * 180.02562 * 14 13 11 36 36 H 1.08998 * 109.47074 * 210.00353 * 19 9 7 37 37 H 1.09000 * 109.47064 * 330.00240 * 19 9 7 38 38 H 1.09006 * 109.47180 * 300.00089 * 20 19 9 39 39 H 1.09004 * 109.47454 * 60.00015 * 20 19 9 40 40 H 1.08005 * 120.07524 * 179.72724 * 23 4 3 41 41 H 1.07993 * 119.93091 * 180.29532 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1944 1.1944 0.0000 4 6 3.5932 1.1926 0.0005 5 6 4.3335 2.4638 0.0000 6 6 5.6825 2.4588 0.0010 7 6 6.4189 3.7234 -0.0056 8 8 5.8143 4.7796 -0.0124 9 7 7.7667 3.7184 -0.0040 10 6 8.5039 4.9843 -0.0111 11 6 8.7551 5.4273 1.4072 12 1 8.4013 4.8258 2.2315 13 6 9.4375 6.6000 1.6526 14 7 9.8687 7.3322 0.6489 15 14 9.7494 7.1487 3.4107 16 1 11.0417 6.5892 3.8821 17 1 9.8032 8.6319 3.4642 18 1 8.6512 6.6615 4.2836 19 6 8.4944 2.4469 0.0049 20 6 8.7494 1.9952 -1.4345 21 6 9.4801 0.7174 -1.4256 22 7 10.0432 -0.2668 -1.4287 23 6 4.2852 -0.0234 -0.0042 24 6 3.5859 -1.2104 0.0021 25 6 2.1988 -1.2017 0.0005 26 9 1.5189 -2.3692 0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8901 0.5138 29 1 -0.3635 0.8899 0.5137 30 1 1.6544 2.1297 -0.0005 31 1 3.7971 3.4012 -0.0013 32 1 6.2190 1.5215 0.0019 33 1 9.4565 4.8471 -0.5230 34 1 7.9183 5.7429 -0.5304 35 1 10.3491 8.1570 0.8215 36 1 9.4467 2.5769 0.5190 37 1 7.9019 1.6927 0.5228 38 1 7.7970 1.8652 -1.9486 39 1 9.3419 2.7494 -1.9525 40 1 5.3652 -0.0315 -0.0083 41 1 4.1187 -2.1497 0.0032 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493500651.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:24 Heat of formation + Delta-G solvation = -18.331686 kcal Electronic energy + Delta-G solvation = -24663.007964 eV Core-core repulsion = 20843.718585 eV Total energy + Delta-G solvation = -3819.289379 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.16937 -39.70291 -39.07389 -36.92481 -35.33862 -34.38351 -32.93583 -32.59402 -30.87016 -29.93710 -27.53476 -27.07259 -24.47627 -23.98840 -22.84329 -22.42622 -20.04874 -18.37946 -17.89620 -17.62391 -17.01840 -16.63167 -16.43372 -15.95347 -15.46299 -15.27987 -14.72206 -14.46125 -14.37649 -14.22340 -13.79583 -13.69784 -13.56739 -13.41844 -13.03978 -12.90151 -12.55606 -12.50765 -12.46516 -12.23153 -12.06775 -11.77084 -11.72092 -11.30077 -11.14161 -10.99539 -10.88909 -10.62453 -10.22136 -10.15944 -9.72749 -9.22213 -9.15421 -8.49003 -8.29671 -7.84536 -6.10513 -4.15218 0.33731 0.93385 1.88136 2.73555 2.80494 3.27498 3.34415 3.35431 3.38820 3.61753 3.86334 3.94905 4.15957 4.33398 4.39976 4.44537 4.55275 4.82276 4.93704 4.96764 5.05301 5.14150 5.18118 5.24535 5.25439 5.33620 5.43192 5.48737 5.66827 5.77495 5.81324 5.82372 5.90200 5.97251 6.06699 6.29064 6.49447 6.58674 6.94792 7.33096 7.40362 7.55389 7.85607 8.14975 8.22477 8.80421 8.95090 9.50383 10.97599 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013315 B = 0.003006 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.324755 B = 9313.778697 C =10736.906903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.120 4.120 3 C -0.074 4.074 4 C -0.065 4.065 5 C -0.047 4.047 6 C -0.190 4.190 7 C 0.536 3.464 8 O -0.534 6.534 9 N -0.590 5.590 10 C 0.244 3.756 11 C -0.529 4.529 12 H 0.058 0.942 13 C 0.063 3.937 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.117 3.883 20 C -0.052 4.052 21 C 0.217 3.783 22 N -0.445 5.445 23 C -0.085 4.085 24 C -0.148 4.148 25 C 0.095 3.905 26 F -0.139 7.139 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.126 0.874 33 H 0.036 0.964 34 H 0.048 0.952 35 H 0.264 0.736 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.118 0.882 40 H 0.137 0.863 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.801 -15.141 -3.593 20.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.065 4.065 5 C -0.066 4.066 6 C -0.210 4.210 7 C 0.325 3.675 8 O -0.413 6.413 9 N -0.321 5.321 10 C 0.125 3.875 11 C -0.568 4.568 12 H 0.077 0.923 13 C -0.140 4.140 14 N -0.532 5.532 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.010 4.010 20 C -0.094 4.094 21 C -0.101 4.101 22 N -0.122 5.122 23 C -0.103 4.103 24 C -0.167 4.167 25 C 0.076 3.924 26 F -0.118 7.118 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.144 0.856 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.136 0.864 40 H 0.155 0.845 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.173 -15.887 -3.643 20.957 hybrid contribution 0.110 0.428 0.969 1.065 sum -13.063 -15.459 -2.675 20.415 Atomic orbital electron populations 1.20740 0.89994 1.03462 1.02925 1.19866 0.97140 0.91772 1.03312 1.21165 0.92964 0.97422 0.97673 1.19137 0.93177 0.93154 1.01045 1.22256 0.94180 0.96130 0.94079 1.23356 0.95228 0.98407 1.04041 1.18116 0.82561 0.88851 0.77986 1.90806 1.67858 1.32926 1.49710 1.48119 1.05148 1.07882 1.70919 1.19376 0.91206 0.79153 0.97747 1.21417 1.35935 1.07152 0.92262 0.92326 1.24915 0.95532 0.96150 0.97382 1.69916 1.38061 1.14658 1.30613 0.86511 0.78494 0.77879 0.84641 1.20645 1.21097 1.19854 1.21342 0.99568 0.86929 0.93130 1.19935 1.00125 0.87714 1.01592 1.29027 0.93460 0.94473 0.93129 1.81121 1.10012 1.12495 1.08612 1.21288 1.00467 0.90772 0.97741 1.21064 0.92073 0.99896 1.03666 1.17722 0.89979 0.80939 1.03737 1.91476 1.80169 1.46311 1.93830 0.90712 0.91203 0.90713 0.84361 0.84367 0.85614 0.94636 0.93438 0.92648 0.88686 0.90532 0.87417 0.86441 0.84493 0.84515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 9.83 36.00 0.35 -0.45 16 2 C -0.12 -1.10 5.88 -104.62 -0.62 -1.72 16 3 C -0.07 -0.69 9.44 -39.12 -0.37 -1.06 16 4 C -0.06 -0.67 5.87 -105.06 -0.62 -1.28 16 5 C -0.05 -0.56 9.46 -37.17 -0.35 -0.91 16 6 C -0.19 -2.46 8.60 -37.51 -0.32 -2.78 16 7 C 0.54 9.75 7.60 -13.00 -0.10 9.65 16 8 O -0.53 -12.19 15.81 5.19 0.08 -12.11 16 9 N -0.59 -10.63 2.46 -176.73 -0.43 -11.06 16 10 C 0.24 5.70 5.16 -5.19 -0.03 5.67 16 11 C -0.53 -13.99 9.39 -34.44 -0.32 -14.32 16 12 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 15 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 C 0.12 1.51 5.07 -4.04 -0.02 1.49 16 20 C -0.05 -0.53 6.03 -29.52 -0.18 -0.71 16 21 C 0.22 2.53 15.43 -20.83 -0.32 2.21 16 22 N -0.45 -6.35 18.52 42.07 0.78 -5.57 16 23 C -0.08 -0.79 9.41 -39.13 -0.37 -1.16 16 24 C -0.15 -1.36 10.01 -39.58 -0.40 -1.75 16 25 C 0.10 0.95 7.25 -39.25 -0.28 0.66 16 26 F -0.14 -1.45 16.46 2.25 0.04 -1.41 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.48 7.63 -51.92 -0.40 0.09 16 29 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 30 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.14 1.77 7.52 -52.49 -0.39 1.38 16 32 H 0.13 1.24 4.22 -52.49 -0.22 1.01 16 33 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.05 1.27 7.42 -51.93 -0.39 0.88 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.09 1.31 8.07 -51.93 -0.42 0.90 16 37 H 0.08 0.81 6.10 -51.93 -0.32 0.49 16 38 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.14 1.05 6.17 -52.48 -0.32 0.73 16 41 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 367.20 15.07 5.53 5.53 Total: -1.00 -32.76 367.20 -7.28 -40.04 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -4.95 Total: -2.07 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -4.04 Total: -4.84 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 1.08 Total: -41.20 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.08 Total: -12.11 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.76 -7.28 -40.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493500651.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.706 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds