Wall clock time and date at job start Tue Mar 31 2020 10:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37814 * 119.92293 * 2 1 4 4 C 1.39880 * 119.84809 * 179.97438 * 3 2 1 5 5 C 1.47108 * 120.13975 * 179.97438 * 4 3 2 6 6 C 1.34894 * 119.99950 * 179.97438 * 5 4 3 7 7 C 1.46346 * 119.99893 * 179.72799 * 6 5 4 8 8 O 1.21703 * 119.99968 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99963 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00210 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47034 * 89.99910 * 10 9 7 12 12 H 1.08002 * 119.99777 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00353 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99696 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00143 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47267 * 90.00230 * 15 13 11 17 17 H 1.48509 * 109.46921 * 210.00209 * 15 13 11 18 18 H 1.48501 * 109.47211 * 329.99927 * 15 13 11 19 19 C 1.46505 * 119.99963 * 359.97438 * 9 7 6 20 20 C 1.52997 * 109.47057 * 90.00033 * 19 9 7 21 21 C 1.47200 * 109.47020 * 180.02562 * 20 19 9 22 22 N 8.65909 * 170.33761 * 259.42342 * 2 1 3 23 23 C 1.39909 * 119.71687 * 0.24984 * 4 3 2 24 24 C 1.37775 * 119.85342 * 359.44986 * 23 4 3 25 25 C 1.38664 * 119.92941 * 179.97438 * 2 1 3 26 26 F 1.35100 * 119.85524 * 0.02562 * 25 2 1 27 27 H 1.09001 * 109.47172 * 90.00378 * 1 2 3 28 28 H 1.09008 * 109.47247 * 209.99830 * 1 2 3 29 29 H 1.08993 * 109.47946 * 330.00252 * 1 2 3 30 30 H 1.07996 * 120.07317 * 359.97085 * 3 2 1 31 31 H 1.08000 * 120.00537 * 359.97438 * 5 4 3 32 32 H 1.07997 * 120.00240 * 0.02562 * 6 5 4 33 33 H 1.09003 * 109.47177 * 209.99968 * 10 9 7 34 34 H 1.09001 * 109.46870 * 330.00304 * 10 9 7 35 35 H 0.96996 * 120.00019 * 180.02562 * 14 13 11 36 36 H 1.08998 * 109.47074 * 210.00353 * 19 9 7 37 37 H 1.09000 * 109.47064 * 330.00240 * 19 9 7 38 38 H 1.09006 * 109.47180 * 300.00089 * 20 19 9 39 39 H 1.09004 * 109.47454 * 60.00015 * 20 19 9 40 40 H 1.08005 * 120.07524 * 179.72724 * 23 4 3 41 41 H 1.07993 * 119.93091 * 180.29532 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1944 1.1944 0.0000 4 6 3.5932 1.1926 0.0005 5 6 4.3335 2.4638 0.0000 6 6 5.6825 2.4588 0.0010 7 6 6.4189 3.7234 -0.0056 8 8 5.8143 4.7796 -0.0124 9 7 7.7667 3.7184 -0.0040 10 6 8.5039 4.9843 -0.0111 11 6 8.7551 5.4273 1.4072 12 1 8.4013 4.8258 2.2315 13 6 9.4375 6.6000 1.6526 14 7 9.8687 7.3322 0.6489 15 14 9.7494 7.1487 3.4107 16 1 11.0417 6.5892 3.8821 17 1 9.8032 8.6319 3.4642 18 1 8.6512 6.6615 4.2836 19 6 8.4944 2.4469 0.0049 20 6 8.7494 1.9952 -1.4345 21 6 9.4801 0.7174 -1.4256 22 7 10.0432 -0.2668 -1.4287 23 6 4.2852 -0.0234 -0.0042 24 6 3.5859 -1.2104 0.0021 25 6 2.1988 -1.2017 0.0005 26 9 1.5189 -2.3692 0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8901 0.5138 29 1 -0.3635 0.8899 0.5137 30 1 1.6544 2.1297 -0.0005 31 1 3.7971 3.4012 -0.0013 32 1 6.2190 1.5215 0.0019 33 1 9.4565 4.8471 -0.5230 34 1 7.9183 5.7429 -0.5304 35 1 10.3491 8.1570 0.8215 36 1 9.4467 2.5769 0.5190 37 1 7.9019 1.6927 0.5228 38 1 7.7970 1.8652 -1.9486 39 1 9.3419 2.7494 -1.9525 40 1 5.3652 -0.0315 -0.0083 41 1 4.1187 -2.1497 0.0032 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493500651.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:23 Heat of formation + Delta-G solvation = -35.595002 kcal Electronic energy + Delta-G solvation = -24663.756557 eV Core-core repulsion = 20843.718585 eV Total energy + Delta-G solvation = -3820.037973 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.93170 -40.84450 -40.06541 -38.00799 -36.71217 -35.33851 -34.76296 -33.36825 -32.14975 -30.89035 -29.11393 -27.82005 -25.79737 -25.29276 -23.79689 -23.47966 -21.11838 -19.48268 -18.90684 -18.57389 -18.32684 -18.12693 -17.53223 -16.84543 -16.69864 -16.18466 -16.12694 -15.75640 -15.61327 -15.18938 -14.80558 -14.54062 -14.35227 -14.27309 -14.21462 -14.06892 -13.69596 -13.59464 -13.50694 -13.22713 -13.15279 -12.96232 -12.85090 -12.69028 -12.55989 -12.47100 -12.16180 -11.89759 -11.81611 -11.66277 -11.06502 -10.64164 -10.56916 -9.89718 -9.50380 -9.07065 -8.16411 -6.28845 -0.52304 0.25572 0.93127 1.41069 1.43379 1.52889 1.76282 1.87594 2.27200 2.42905 2.47591 2.79117 3.12815 3.17249 3.24317 3.59267 3.65659 3.81125 3.99162 4.13239 4.15752 4.17796 4.26285 4.30196 4.58273 4.63727 4.75331 4.82272 4.85775 4.94307 5.04607 5.05292 5.11709 5.16467 5.20125 5.27834 5.34089 5.48686 5.61391 5.63644 5.87745 5.90641 6.14489 6.62634 6.76688 6.83218 7.35354 7.52480 8.90106 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013315 B = 0.003006 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.324755 B = 9313.778697 C =10736.906903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.126 4.126 3 C -0.074 4.074 4 C -0.080 4.080 5 C -0.023 4.023 6 C -0.200 4.200 7 C 0.531 3.469 8 O -0.595 6.595 9 N -0.592 5.592 10 C 0.258 3.742 11 C -0.540 4.540 12 H 0.053 0.947 13 C 0.011 3.989 14 N -0.926 5.926 15 Si 0.958 3.042 16 H -0.267 1.267 17 H -0.284 1.284 18 H -0.274 1.274 19 C 0.112 3.888 20 C -0.039 4.039 21 C 0.246 3.754 22 N -0.487 5.487 23 C -0.080 4.080 24 C -0.151 4.151 25 C 0.084 3.916 26 F -0.144 7.144 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.152 0.848 31 H 0.124 0.876 32 H 0.164 0.836 33 H 0.036 0.964 34 H 0.005 0.995 35 H 0.265 0.735 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.136 0.864 39 H 0.119 0.881 40 H 0.158 0.842 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.456 -17.172 -3.102 22.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.127 4.127 3 C -0.092 4.092 4 C -0.080 4.080 5 C -0.043 4.043 6 C -0.220 4.220 7 C 0.323 3.677 8 O -0.478 6.478 9 N -0.321 5.321 10 C 0.137 3.863 11 C -0.579 4.579 12 H 0.072 0.928 13 C -0.188 4.188 14 N -0.566 5.566 15 Si 0.784 3.216 16 H -0.192 1.192 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.013 4.013 20 C -0.080 4.080 21 C -0.071 4.071 22 N -0.165 5.165 23 C -0.098 4.098 24 C -0.170 4.170 25 C 0.065 3.935 26 F -0.123 7.123 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.170 0.830 31 H 0.142 0.858 32 H 0.181 0.819 33 H 0.054 0.946 34 H 0.023 0.977 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.127 0.873 38 H 0.154 0.846 39 H 0.137 0.863 40 H 0.175 0.825 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.813 -17.976 -3.154 22.888 hybrid contribution 0.182 1.015 0.795 1.302 sum -13.631 -16.960 -2.359 21.887 Atomic orbital electron populations 1.20801 0.88659 1.04064 1.03655 1.20097 0.98276 0.91455 1.02897 1.21367 0.92843 0.98158 0.96861 1.19071 0.93522 0.92590 1.02806 1.22291 0.94012 0.96598 0.91374 1.23103 0.95148 0.96873 1.06846 1.18912 0.82411 0.89998 0.76409 1.90772 1.68932 1.35531 1.52582 1.47977 1.05428 1.07898 1.70798 1.18829 0.90821 0.80895 0.95721 1.21756 1.35363 1.07241 0.93519 0.92836 1.25724 0.95543 0.96396 1.01153 1.70023 1.38958 1.15107 1.32517 0.85553 0.78702 0.77330 0.80062 1.19240 1.21014 1.19855 1.21577 0.99163 0.85248 0.95278 1.19850 1.01408 0.86864 0.99909 1.29015 0.92332 0.93932 0.91809 1.81166 1.11434 1.13965 1.09930 1.21505 1.01495 0.90187 0.96623 1.21289 0.91849 1.00707 1.03142 1.18014 0.90591 0.81022 1.03846 1.91465 1.80343 1.46604 1.93874 0.89870 0.91279 0.89478 0.83050 0.85790 0.81925 0.94615 0.97703 0.92568 0.89699 0.87327 0.84574 0.86271 0.82503 0.82747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 9.83 71.23 0.70 -0.68 16 2 C -0.13 -2.05 5.88 -19.86 -0.12 -2.17 16 3 C -0.07 -1.22 9.44 22.57 0.21 -1.01 16 4 C -0.08 -1.44 5.87 -20.15 -0.12 -1.56 16 5 C -0.02 -0.51 9.46 23.83 0.23 -0.29 16 6 C -0.20 -4.76 8.60 23.61 0.20 -4.56 16 7 C 0.53 19.27 7.60 86.35 0.66 19.93 16 8 O -0.60 -28.18 15.81 -4.36 -0.07 -28.25 16 9 N -0.59 -21.17 2.46 -831.26 -2.04 -23.21 16 10 C 0.26 12.43 5.16 85.63 0.44 12.88 16 11 C -0.54 -29.08 9.39 25.60 0.24 -28.84 16 12 H 0.05 2.87 7.81 -2.91 -0.02 2.84 16 13 C 0.01 0.60 5.46 84.65 0.46 1.06 16 14 N -0.93 -53.53 13.29 21.45 0.28 -53.24 16 15 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 16 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 19 C 0.11 2.66 5.07 86.38 0.44 3.10 16 20 C -0.04 -0.69 6.03 28.79 0.17 -0.52 16 21 C 0.25 5.13 15.43 89.47 1.38 6.51 16 22 N -0.49 -12.97 18.52 19.98 0.37 -12.60 16 23 C -0.08 -1.23 9.41 22.56 0.21 -1.01 16 24 C -0.15 -2.32 10.01 22.27 0.22 -2.10 16 25 C 0.08 1.49 7.25 22.48 0.16 1.65 16 26 F -0.14 -2.73 16.46 44.97 0.74 -1.99 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 0.84 7.63 -2.38 -0.02 0.82 16 29 H 0.09 0.81 8.08 -2.39 -0.02 0.79 16 30 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 31 H 0.12 3.16 7.52 -2.91 -0.02 3.14 16 32 H 0.16 2.53 4.22 -2.91 -0.01 2.52 16 33 H 0.04 1.70 8.07 -2.39 -0.02 1.68 16 34 H 0.00 0.27 7.42 -2.39 -0.02 0.26 16 35 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 36 H 0.08 2.23 8.07 -2.39 -0.02 2.21 16 37 H 0.11 1.91 6.10 -2.39 -0.01 1.90 16 38 H 0.14 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.12 2.18 8.14 -2.38 -0.02 2.17 16 40 H 0.16 1.69 6.17 -2.91 -0.02 1.67 16 41 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -73.70 367.20 7.87 -65.83 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 1.06 Total: 5.59 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 5.50 Total: 2.40 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -1.39 Total: -89.05 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.07 Total: -28.25 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.74 Total: -1.99 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -73.70 7.87 -65.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493500651.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.239 kcal (2) G-P(sol) polarization free energy of solvation -73.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds