Wall clock time and date at job start Tue Mar 31 2020 11:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47253 * 2 1 4 4 N 1.46904 * 109.46914 * 120.00264 * 2 1 3 5 5 C 1.46903 * 111.00167 * 152.84331 * 4 2 1 6 6 C 1.50705 * 109.46797 * 288.24705 * 5 4 2 7 7 H 1.08005 * 119.99862 * 4.61792 * 6 5 4 8 8 C 1.37873 * 120.00016 * 184.61192 * 6 5 4 9 9 N 1.31518 * 119.99788 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00121 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47199 * 89.99843 * 10 8 6 12 12 H 1.48499 * 109.47268 * 210.00066 * 10 8 6 13 13 H 1.48506 * 109.47074 * 330.00244 * 10 8 6 14 14 C 1.46906 * 110.99690 * 276.79231 * 4 2 1 15 15 C 1.50696 * 109.47065 * 76.19191 * 14 4 2 16 16 C 1.33725 * 125.89547 * 79.87107 * 15 14 4 17 17 N 1.31300 * 115.85149 * 179.97438 * 16 15 14 18 18 C 1.30222 * 117.04153 * 359.97438 * 17 16 15 19 19 C 1.47876 * 125.47483 * 179.97438 * 18 17 16 20 20 C 1.39545 * 120.14312 * 179.74742 * 19 18 17 21 21 C 1.37967 * 119.85342 * 179.76992 * 20 19 18 22 22 C 1.38348 * 120.14380 * 0.51250 * 21 20 19 23 23 C 1.38355 * 120.28493 * 359.74471 * 22 21 20 24 24 C 1.37964 * 120.14284 * 359.97438 * 23 22 21 25 25 S 1.76182 * 109.05557 * 0.26773 * 18 17 16 26 26 H 1.09000 * 109.46767 * 305.80033 * 1 2 3 27 27 H 1.08993 * 109.47167 * 65.80178 * 1 2 3 28 28 H 1.09002 * 109.47181 * 185.80239 * 1 2 3 29 29 H 1.09001 * 109.46993 * 239.99826 * 2 1 3 30 30 H 1.09004 * 109.47398 * 170.80377 * 3 2 1 31 31 H 1.09000 * 109.47288 * 290.81030 * 3 2 1 32 32 H 1.09004 * 109.47381 * 50.80793 * 3 2 1 33 33 H 1.09003 * 109.47103 * 48.24359 * 5 4 2 34 34 H 1.08995 * 109.47250 * 168.24508 * 5 4 2 35 35 H 0.97003 * 119.99473 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.47040 * 316.18976 * 14 4 2 37 37 H 1.09004 * 109.46588 * 196.18917 * 14 4 2 38 38 H 1.08005 * 122.07190 * 0.02562 * 16 15 14 39 39 H 1.08003 * 120.06997 * 0.02562 * 20 19 18 40 40 H 1.08001 * 119.92648 * 180.25610 * 21 20 19 41 41 H 1.07992 * 119.85844 * 179.72116 * 22 21 20 42 42 H 1.08000 * 119.92665 * 180.02562 * 23 22 21 43 43 H 1.08001 * 120.06949 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 3.3456 -1.2795 0.9641 6 6 3.2136 -2.4662 0.0446 7 1 2.2542 -2.7107 -0.3872 8 6 4.3174 -3.2396 -0.2457 9 7 5.4857 -2.9414 0.2796 10 14 4.1540 -4.7100 -1.3860 11 1 4.3963 -4.2798 -2.7865 12 1 5.1500 -5.7440 -1.0064 13 1 2.7855 -5.2754 -1.2717 14 6 2.0421 0.2116 2.3571 15 6 0.6391 0.4025 2.8727 16 6 -0.0314 -0.4498 3.6552 17 7 -1.2475 -0.0847 3.9893 18 6 -1.6700 1.0579 3.5293 19 6 -3.0016 1.6474 3.7869 20 6 -3.3371 2.8866 3.2400 21 6 -4.5828 3.4287 3.4803 22 6 -5.4946 2.7515 4.2702 23 6 -5.1662 1.5250 4.8198 24 6 -3.9259 0.9692 4.5825 25 16 -0.4035 1.7850 2.5437 26 1 -0.3633 0.6012 0.8335 27 1 -0.3633 0.4212 -0.9373 28 1 -0.3634 -1.0224 0.1039 29 1 1.8933 -0.5139 -0.8900 30 1 3.1176 1.4469 0.1642 31 1 1.8169 1.9067 -0.9606 32 1 1.5489 2.0015 0.7965 33 1 3.9963 -0.5350 0.5053 34 1 3.7742 -1.6012 1.9132 35 1 6.2624 -3.4854 0.0751 36 1 2.4533 1.1755 2.0572 37 1 2.6625 -0.2196 3.1428 38 1 0.4010 -1.3804 3.9921 39 1 -2.6246 3.4181 2.6265 40 1 -4.8452 4.3858 3.0542 41 1 -6.4667 3.1823 4.4590 42 1 -5.8826 1.0012 5.4353 43 1 -3.6710 0.0116 5.0117 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534337543.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:53 Heat of formation + Delta-G solvation = 79.735603 kcal Electronic energy + Delta-G solvation = -23461.971443 eV Core-core repulsion = 20213.147757 eV Total energy + Delta-G solvation = -3248.823686 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.78871 -38.91847 -37.72914 -32.97201 -32.56077 -31.27365 -31.15564 -29.95654 -27.16535 -26.64733 -25.51314 -23.73121 -22.69779 -22.19846 -22.08410 -19.43711 -19.10308 -17.67404 -16.96901 -16.27466 -15.87140 -15.26581 -14.92877 -14.78250 -14.59628 -14.47186 -14.03566 -13.68980 -13.57419 -13.38428 -13.13655 -12.82122 -12.43111 -12.30004 -12.09895 -11.76595 -11.61542 -11.49121 -11.33114 -11.00444 -10.90748 -10.78974 -10.64916 -10.55285 -10.28084 -9.84401 -9.67546 -9.55547 -9.28775 -9.20042 -8.56707 -8.46212 -8.07821 -7.32864 -6.05614 -4.06580 0.27364 1.16532 1.35820 1.51454 1.82395 3.04054 3.30408 3.37000 3.41891 3.68422 4.01131 4.40660 4.67488 4.71323 4.87009 4.88842 5.05702 5.20571 5.24962 5.30376 5.36266 5.46187 5.48213 5.63868 5.69754 5.80067 5.85784 5.97998 6.07318 6.09900 6.14734 6.23211 6.24780 6.25400 6.27419 6.41512 6.45570 6.68790 6.77491 6.80752 7.19700 7.27848 7.77445 7.85767 8.03278 8.15115 8.47573 9.00839 9.57612 11.04920 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.025671 B = 0.002938 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.472721 B = 9528.778132 C = 9775.474349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.079 3.921 3 C -0.177 4.177 4 N -0.522 5.522 5 C 0.194 3.806 6 C -0.504 4.504 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.897 3.103 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.113 3.887 15 C -0.163 4.163 16 C 0.041 3.959 17 N -0.455 5.455 18 C 0.082 3.918 19 C -0.013 4.013 20 C -0.103 4.103 21 C -0.118 4.118 22 C -0.113 4.113 23 C -0.121 4.121 24 C -0.077 4.077 25 S 0.085 5.915 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.046 0.954 33 H -0.008 1.008 34 H 0.033 0.967 35 H 0.261 0.739 36 H 0.052 0.948 37 H 0.091 0.909 38 H 0.178 0.822 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.485 13.758 7.050 23.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.030 4.030 3 C -0.236 4.236 4 N -0.246 5.246 5 C 0.069 3.931 6 C -0.542 4.542 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.725 3.275 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.018 4.018 15 C -0.284 4.284 16 C -0.110 4.110 17 N -0.168 5.168 18 C -0.192 4.192 19 C -0.017 4.017 20 C -0.123 4.123 21 C -0.136 4.136 22 C -0.132 4.132 23 C -0.140 4.140 24 C -0.098 4.098 25 S 0.342 5.658 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.010 0.990 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.194 0.806 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.766 13.890 6.905 23.585 hybrid contribution 1.080 -1.016 -0.618 1.606 sum -16.685 12.875 6.288 21.993 Atomic orbital electron populations 1.22336 0.95964 1.02221 1.00918 1.21634 0.94563 0.91589 0.95175 1.22450 1.01328 0.98858 1.00921 1.62334 1.30412 1.30100 1.01755 1.19802 0.82342 0.93675 0.97295 1.21127 0.95031 1.10946 1.27142 0.91875 1.24968 0.95231 0.97874 0.96471 1.69953 0.99658 1.39817 1.44445 0.86511 0.77948 0.82300 0.80761 1.20770 1.21263 1.19755 1.20696 0.87955 0.97466 0.95693 1.26090 1.02436 0.96357 1.03531 1.21512 0.88800 1.01308 0.99362 1.66490 1.14565 1.13019 1.22751 1.25709 0.97968 0.94760 1.00732 1.17875 0.89820 0.94518 0.99492 1.21186 0.97270 0.94380 0.99484 1.21016 0.93329 1.00230 0.99069 1.21282 0.99495 0.95198 0.97188 1.21147 0.96524 0.95967 1.00322 1.21311 0.92445 0.99920 0.96173 1.84700 1.09342 1.24147 1.47602 0.92388 0.93657 0.92377 0.89090 0.92382 0.92693 0.93475 0.99018 0.94858 0.92916 0.92980 0.89121 0.80552 0.85808 0.85509 0.85818 0.85518 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 8.92 37.16 0.33 -2.31 16 2 C 0.08 1.49 2.68 -67.71 -0.18 1.31 16 3 C -0.18 -2.87 7.79 37.16 0.29 -2.58 16 4 N -0.52 -10.74 4.29 -229.51 -0.99 -11.73 16 5 C 0.19 4.81 4.64 -4.97 -0.02 4.79 16 6 C -0.50 -13.81 8.36 -34.44 -0.29 -14.10 16 7 H 0.06 1.74 7.65 -52.48 -0.40 1.34 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.21 13.29 55.43 0.74 -25.47 16 10 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 14 C 0.11 1.95 5.05 -4.97 -0.03 1.93 16 15 C -0.16 -2.59 4.55 -35.89 -0.16 -2.75 16 16 C 0.04 0.66 11.14 -19.36 -0.22 0.45 16 17 N -0.45 -7.19 10.14 -11.35 -0.12 -7.31 16 18 C 0.08 1.18 7.35 -14.29 -0.11 1.07 16 19 C -0.01 -0.16 5.87 -104.98 -0.62 -0.78 16 20 C -0.10 -1.05 9.61 -39.19 -0.38 -1.43 16 21 C -0.12 -0.98 10.03 -39.64 -0.40 -1.38 16 22 C -0.11 -0.88 10.04 -39.50 -0.40 -1.28 16 23 C -0.12 -1.06 10.03 -39.64 -0.40 -1.45 16 24 C -0.08 -0.86 9.68 -39.20 -0.38 -1.23 16 25 S 0.09 1.17 17.93 -107.50 -1.93 -0.76 16 26 H 0.06 0.92 3.11 -28.46 -0.09 0.84 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.09 1.93 6.96 -51.93 -0.36 1.57 16 30 H 0.06 1.00 7.13 -51.93 -0.37 0.63 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.70 5.08 -51.93 -0.26 0.43 16 33 H -0.01 -0.21 7.32 -51.93 -0.38 -0.59 16 34 H 0.03 0.88 7.68 -51.93 -0.40 0.48 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 36 H 0.05 0.86 5.24 -51.93 -0.27 0.59 16 37 H 0.09 1.56 7.64 -51.93 -0.40 1.16 16 38 H 0.18 2.74 8.06 -52.48 -0.42 2.32 16 39 H 0.12 1.15 7.30 -52.48 -0.38 0.76 16 40 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.14 1.52 7.82 -52.49 -0.41 1.11 16 LS Contribution 355.61 15.07 5.36 5.36 Total: -1.00 -29.91 355.61 -10.82 -40.73 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.82 Total: 0.98 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -3.04 Total: -18.30 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -0.36 Total: -44.51 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -1.93 Total: -0.76 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.91 -10.82 -40.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534337543.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.466 kcal (2) G-P(sol) polarization free energy of solvation -29.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds