Wall clock time and date at job start Tue Mar 31 2020 11:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47253 * 2 1 4 4 N 1.46904 * 109.46914 * 120.00264 * 2 1 3 5 5 C 1.46903 * 111.00167 * 152.84331 * 4 2 1 6 6 C 1.50705 * 109.46797 * 288.24705 * 5 4 2 7 7 H 1.08005 * 119.99862 * 4.61792 * 6 5 4 8 8 C 1.37873 * 120.00016 * 184.61192 * 6 5 4 9 9 N 1.31518 * 119.99788 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00121 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47199 * 89.99843 * 10 8 6 12 12 H 1.48499 * 109.47268 * 210.00066 * 10 8 6 13 13 H 1.48506 * 109.47074 * 330.00244 * 10 8 6 14 14 C 1.46906 * 110.99690 * 276.79231 * 4 2 1 15 15 C 1.50696 * 109.47065 * 76.19191 * 14 4 2 16 16 C 1.33725 * 125.89547 * 79.87107 * 15 14 4 17 17 N 1.31300 * 115.85149 * 179.97438 * 16 15 14 18 18 C 1.30222 * 117.04153 * 359.97438 * 17 16 15 19 19 C 1.47876 * 125.47483 * 179.97438 * 18 17 16 20 20 C 1.39545 * 120.14312 * 179.74742 * 19 18 17 21 21 C 1.37967 * 119.85342 * 179.76992 * 20 19 18 22 22 C 1.38348 * 120.14380 * 0.51250 * 21 20 19 23 23 C 1.38355 * 120.28493 * 359.74471 * 22 21 20 24 24 C 1.37964 * 120.14284 * 359.97438 * 23 22 21 25 25 S 1.76182 * 109.05557 * 0.26773 * 18 17 16 26 26 H 1.09000 * 109.46767 * 305.80033 * 1 2 3 27 27 H 1.08993 * 109.47167 * 65.80178 * 1 2 3 28 28 H 1.09002 * 109.47181 * 185.80239 * 1 2 3 29 29 H 1.09001 * 109.46993 * 239.99826 * 2 1 3 30 30 H 1.09004 * 109.47398 * 170.80377 * 3 2 1 31 31 H 1.09000 * 109.47288 * 290.81030 * 3 2 1 32 32 H 1.09004 * 109.47381 * 50.80793 * 3 2 1 33 33 H 1.09003 * 109.47103 * 48.24359 * 5 4 2 34 34 H 1.08995 * 109.47250 * 168.24508 * 5 4 2 35 35 H 0.97003 * 119.99473 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.47040 * 316.18976 * 14 4 2 37 37 H 1.09004 * 109.46588 * 196.18917 * 14 4 2 38 38 H 1.08005 * 122.07190 * 0.02562 * 16 15 14 39 39 H 1.08003 * 120.06997 * 0.02562 * 20 19 18 40 40 H 1.08001 * 119.92648 * 180.25610 * 21 20 19 41 41 H 1.07992 * 119.85844 * 179.72116 * 22 21 20 42 42 H 1.08000 * 119.92665 * 180.02562 * 23 22 21 43 43 H 1.08001 * 120.06949 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 3.3456 -1.2795 0.9641 6 6 3.2136 -2.4662 0.0446 7 1 2.2542 -2.7107 -0.3872 8 6 4.3174 -3.2396 -0.2457 9 7 5.4857 -2.9414 0.2796 10 14 4.1540 -4.7100 -1.3860 11 1 4.3963 -4.2798 -2.7865 12 1 5.1500 -5.7440 -1.0064 13 1 2.7855 -5.2754 -1.2717 14 6 2.0421 0.2116 2.3571 15 6 0.6391 0.4025 2.8727 16 6 -0.0314 -0.4498 3.6552 17 7 -1.2475 -0.0847 3.9893 18 6 -1.6700 1.0579 3.5293 19 6 -3.0016 1.6474 3.7869 20 6 -3.3371 2.8866 3.2400 21 6 -4.5828 3.4287 3.4803 22 6 -5.4946 2.7515 4.2702 23 6 -5.1662 1.5250 4.8198 24 6 -3.9259 0.9692 4.5825 25 16 -0.4035 1.7850 2.5437 26 1 -0.3633 0.6012 0.8335 27 1 -0.3633 0.4212 -0.9373 28 1 -0.3634 -1.0224 0.1039 29 1 1.8933 -0.5139 -0.8900 30 1 3.1176 1.4469 0.1642 31 1 1.8169 1.9067 -0.9606 32 1 1.5489 2.0015 0.7965 33 1 3.9963 -0.5350 0.5053 34 1 3.7742 -1.6012 1.9132 35 1 6.2624 -3.4854 0.0751 36 1 2.4533 1.1755 2.0572 37 1 2.6625 -0.2196 3.1428 38 1 0.4010 -1.3804 3.9921 39 1 -2.6246 3.4181 2.6265 40 1 -4.8452 4.3858 3.0542 41 1 -6.4667 3.1823 4.4590 42 1 -5.8826 1.0012 5.4353 43 1 -3.6710 0.0116 5.0117 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534337543.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:52 Heat of formation + Delta-G solvation = 63.221284 kcal Electronic energy + Delta-G solvation = -23462.687558 eV Core-core repulsion = 20213.147757 eV Total energy + Delta-G solvation = -3249.539801 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.87210 -39.90720 -39.13376 -35.00330 -33.63525 -32.64832 -31.91296 -31.35772 -28.70899 -28.09033 -26.91023 -25.00771 -23.97931 -23.48770 -23.12164 -20.83857 -20.27755 -18.85186 -18.37826 -17.84457 -17.09000 -16.64384 -16.17562 -16.13106 -15.76327 -15.70136 -15.41099 -14.88552 -14.65576 -14.46429 -14.34084 -14.10447 -13.83287 -13.67715 -13.56719 -13.34473 -12.90133 -12.80321 -12.69948 -12.45523 -12.31091 -12.21400 -12.09185 -11.95656 -11.90752 -11.57764 -11.37878 -10.71883 -10.63599 -10.58632 -9.90637 -9.76569 -9.11359 -8.99607 -8.20217 -6.29141 -0.74613 0.22244 0.46470 0.59159 0.64108 1.39314 1.40500 1.52001 1.90324 2.39658 2.91282 3.00669 3.11233 3.31251 3.84848 3.95257 4.03719 4.04563 4.09001 4.14377 4.29532 4.31748 4.47368 4.53861 4.55575 4.60939 4.71394 4.73596 4.82090 4.90595 4.92839 4.99631 5.11345 5.13143 5.16745 5.18867 5.34780 5.47249 5.51147 5.52539 5.58073 5.66364 6.01327 6.06118 6.37595 6.59053 6.70317 6.85753 7.39712 8.89889 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.025671 B = 0.002938 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.472721 B = 9528.778132 C = 9775.474349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.076 3.924 3 C -0.169 4.169 4 N -0.532 5.532 5 C 0.211 3.789 6 C -0.517 4.517 7 H 0.056 0.944 8 C 0.005 3.995 9 N -0.932 5.932 10 Si 0.963 3.037 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.269 1.269 14 C 0.118 3.882 15 C -0.190 4.190 16 C 0.038 3.962 17 N -0.482 5.482 18 C 0.092 3.908 19 C -0.048 4.048 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.101 4.101 23 C -0.123 4.123 24 C -0.091 4.091 25 S 0.128 5.872 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.036 0.964 29 H 0.061 0.939 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.062 0.938 33 H -0.030 1.030 34 H 0.008 0.992 35 H 0.264 0.736 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.171 0.829 39 H 0.131 0.869 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.150 0.850 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.484 15.643 6.624 26.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 C -0.227 4.227 4 N -0.256 5.256 5 C 0.085 3.915 6 C -0.556 4.556 7 H 0.075 0.925 8 C -0.193 4.193 9 N -0.573 5.573 10 Si 0.788 3.212 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.194 1.194 14 C -0.012 4.012 15 C -0.311 4.311 16 C -0.113 4.113 17 N -0.196 5.196 18 C -0.182 4.182 19 C -0.052 4.052 20 C -0.128 4.128 21 C -0.135 4.135 22 C -0.120 4.120 23 C -0.141 4.141 24 C -0.113 4.113 25 S 0.385 5.615 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.081 0.919 33 H -0.012 1.012 34 H 0.026 0.974 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.188 0.812 39 H 0.149 0.851 40 H 0.175 0.825 41 H 0.175 0.825 42 H 0.168 0.832 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -20.772 15.793 6.476 26.885 hybrid contribution 1.806 -1.480 -0.405 2.370 sum -18.966 14.313 6.071 24.524 Atomic orbital electron populations 1.22273 0.94248 1.01392 1.02679 1.21643 0.95803 0.92656 0.93142 1.22345 1.00299 0.97260 1.02793 1.62230 1.27650 1.32124 1.03589 1.19401 0.84115 0.92774 0.95193 1.21402 0.94800 1.11845 1.27529 0.92541 1.25810 0.94853 1.00703 0.97964 1.70067 1.00373 1.41086 1.45754 0.85470 0.77982 0.78779 0.78921 1.19806 1.20704 1.19374 1.20585 0.89330 0.97072 0.94203 1.25811 1.02182 0.98212 1.04907 1.21540 0.89186 1.01287 0.99276 1.66527 1.14505 1.14251 1.24278 1.26262 0.98777 0.93999 0.99172 1.18048 0.89261 0.96024 1.01842 1.21374 0.98458 0.93600 0.99333 1.21415 0.92351 1.01231 0.98512 1.21737 1.00623 0.94307 0.95366 1.21453 0.95822 0.96535 1.00303 1.21378 0.93557 0.99810 0.96516 1.84363 1.07904 1.22189 1.47013 0.91273 0.91295 0.94446 0.92030 0.93925 0.90459 0.91905 1.01195 0.97361 0.92713 0.91979 0.89925 0.81153 0.85113 0.82529 0.82495 0.83226 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 8.92 71.98 0.64 -4.27 16 2 C 0.08 2.90 2.68 44.91 0.12 3.02 16 3 C -0.17 -5.35 7.79 71.98 0.56 -4.79 16 4 N -0.53 -22.78 4.29 -880.03 -3.78 -26.56 16 5 C 0.21 11.05 4.64 85.56 0.40 11.45 16 6 C -0.52 -29.38 8.36 25.60 0.21 -29.16 16 7 H 0.06 3.21 7.65 -2.91 -0.02 3.19 16 8 C 0.00 0.27 5.46 84.65 0.46 0.73 16 9 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 10 Si 0.96 44.80 29.54 68.60 2.03 46.82 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 14 C 0.12 4.24 5.05 85.55 0.43 4.68 16 15 C -0.19 -6.11 4.55 24.66 0.11 -6.00 16 16 C 0.04 1.27 11.14 83.75 0.93 2.21 16 17 N -0.48 -15.51 10.14 -189.83 -1.93 -17.44 16 18 C 0.09 2.58 7.35 87.49 0.64 3.22 16 19 C -0.05 -1.12 5.87 -20.10 -0.12 -1.23 16 20 C -0.11 -1.92 9.61 22.52 0.22 -1.70 16 21 C -0.12 -1.49 10.03 22.23 0.22 -1.26 16 22 C -0.10 -1.16 10.04 22.32 0.22 -0.94 16 23 C -0.12 -1.80 10.03 22.23 0.22 -1.58 16 24 C -0.09 -1.92 9.68 22.52 0.22 -1.70 16 25 S 0.13 3.34 17.93 -56.49 -1.01 2.33 16 26 H 0.07 2.13 3.11 -17.31 -0.05 2.08 16 27 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 29 H 0.06 2.70 6.96 -2.39 -0.02 2.68 16 30 H 0.04 1.48 7.13 -2.38 -0.02 1.46 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.06 1.77 5.08 -2.38 -0.01 1.76 16 33 H -0.03 -1.65 7.32 -2.39 -0.02 -1.66 16 34 H 0.01 0.47 7.68 -2.39 -0.02 0.45 16 35 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 36 H 0.06 2.08 5.24 -2.39 -0.01 2.07 16 37 H 0.08 3.03 7.64 -2.38 -0.02 3.01 16 38 H 0.17 5.66 8.06 -2.91 -0.02 5.64 16 39 H 0.13 2.06 7.30 -2.91 -0.02 2.04 16 40 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 41 H 0.16 0.79 8.06 -2.91 -0.02 0.76 16 42 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.12 2.80 7.82 -2.91 -0.02 2.78 16 Total: -1.00 -66.69 355.61 2.06 -64.63 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.97 Total: 13.07 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 5.50 Total: -27.33 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -5.42 Total: -99.51 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -1.01 Total: 2.33 kcal Total: -66.69 2.06 -64.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534337543.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.851 kcal (2) G-P(sol) polarization free energy of solvation -66.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds