Wall clock time and date at job start Tue Mar 31 2020 11:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.47066 * 2 1 4 4 N 1.46500 * 109.47006 * 119.99464 * 2 1 3 5 5 C 1.46499 * 120.00449 * 294.09156 * 4 2 1 6 6 C 1.50696 * 109.47376 * 270.00169 * 5 4 2 7 7 H 1.08005 * 120.00198 * 0.02562 * 6 5 4 8 8 C 1.37868 * 120.00255 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00123 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00267 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46951 * 60.00080 * 10 8 6 12 12 H 1.48499 * 109.47153 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47223 * 300.00047 * 10 8 6 14 14 C 1.34777 * 119.99517 * 114.09467 * 4 2 1 15 15 O 1.21607 * 120.00006 * 184.18561 * 14 4 2 16 16 C 1.47446 * 120.00059 * 4.18623 * 14 4 2 17 17 C 1.38714 * 120.31580 * 304.47732 * 16 14 4 18 18 C 1.39100 * 120.69825 * 180.02562 * 17 16 14 19 19 F 1.35102 * 119.49743 * 179.97438 * 18 17 16 20 20 C 1.36532 * 121.00053 * 359.97438 * 18 17 16 21 21 C 1.40408 * 120.07359 * 359.95924 * 20 18 17 22 22 C 1.40814 * 121.24453 * 180.27300 * 21 20 18 23 23 C 1.36627 * 118.16102 * 180.26068 * 22 21 20 24 24 C 1.39243 * 119.90606 * 359.50907 * 23 22 21 25 25 N 1.31221 * 121.69650 * 0.28353 * 24 23 22 26 26 C 1.33356 * 121.35621 * 359.96799 * 25 24 23 27 27 H 1.09003 * 109.47140 * 300.00021 * 1 2 3 28 28 H 1.09000 * 109.47315 * 60.00024 * 1 2 3 29 29 H 1.08995 * 109.47074 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47263 * 239.99643 * 2 1 3 31 31 H 1.08995 * 109.47148 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47034 * 300.00148 * 3 2 1 33 33 H 1.09003 * 109.47159 * 59.99990 * 3 2 1 34 34 H 1.08999 * 109.47065 * 29.99993 * 5 4 2 35 35 H 1.08997 * 109.47274 * 149.99847 * 5 4 2 36 36 H 0.97002 * 120.00632 * 180.02562 * 9 8 6 37 37 H 1.08003 * 119.64988 * 0.02991 * 17 16 14 38 38 H 1.08004 * 119.96585 * 179.97438 * 20 18 17 39 39 H 1.08005 * 120.92150 * 0.02712 * 22 21 20 40 40 H 1.07994 * 120.05143 * 179.79611 * 23 22 21 41 41 H 1.08002 * 119.15255 * 180.25170 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7743 -0.1190 2.5229 6 6 2.9134 0.7954 2.8934 7 1 3.7367 0.9371 2.2088 8 6 2.9041 1.4519 4.1056 9 7 1.9009 1.2806 4.9386 10 14 4.3165 2.5848 4.5652 11 1 4.4191 3.6784 3.5657 12 1 4.0684 3.1651 5.9094 13 1 5.5845 1.8121 4.5854 14 6 2.6922 -1.8515 1.0762 15 8 3.0311 -2.4635 2.0709 16 6 3.0185 -2.3797 -0.2612 17 6 2.0144 -2.5908 -1.1947 18 6 2.3131 -3.0893 -2.4585 19 9 1.3161 -3.2862 -3.3487 20 6 3.5986 -3.3825 -2.8130 21 6 4.6441 -3.1817 -1.8976 22 6 5.9794 -3.4705 -2.2390 23 6 6.9463 -3.2565 -1.2978 24 6 6.5980 -2.7562 -0.0459 25 7 5.3526 -2.4846 0.2659 26 6 4.3616 -2.6758 -0.6057 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 0.8433 0.4477 2.5087 35 1 1.6996 -0.9219 3.2563 36 1 1.8942 1.7428 5.7914 37 1 0.9898 -2.3658 -0.9376 38 1 3.8116 -3.7692 -3.7987 39 1 6.2318 -3.8541 -3.2166 40 1 7.9800 -3.4706 -1.5259 41 1 7.3727 -2.5878 0.6876 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535050631.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:28 Heat of formation + Delta-G solvation = -18.574269 kcal Electronic energy + Delta-G solvation = -26744.522230 eV Core-core repulsion = 22925.222332 eV Total energy + Delta-G solvation = -3819.299898 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.10427 -41.02691 -39.08179 -36.69406 -35.92785 -33.61940 -32.74785 -30.87488 -30.69885 -30.05561 -27.35745 -26.68227 -24.80066 -23.80948 -23.53257 -22.28962 -21.12470 -19.09925 -18.50204 -17.53697 -17.19308 -16.47377 -16.38666 -15.80545 -15.69786 -15.10623 -15.06472 -14.43590 -14.33227 -14.15737 -13.99696 -13.47259 -13.26487 -13.22176 -13.15391 -12.48918 -12.38185 -12.22372 -11.76386 -11.62285 -11.54257 -11.49389 -11.14816 -10.91166 -10.85741 -10.71920 -10.47510 -10.32078 -9.98742 -9.56008 -9.49412 -8.97779 -8.82333 -8.37649 -8.30838 -7.63406 -5.98339 -4.01023 0.05246 0.57966 1.70956 2.54759 3.34745 3.36613 3.39888 3.45673 3.73722 3.92403 4.08376 4.23274 4.39038 4.50345 4.57339 4.70660 4.72839 4.82087 5.05295 5.24323 5.30357 5.36393 5.44055 5.52856 5.56798 5.66162 5.74777 5.81510 5.87062 6.01198 6.02187 6.16020 6.25804 6.34196 6.39431 6.60140 6.63127 6.99680 7.12026 7.49980 7.58392 7.94002 7.98717 8.30002 8.41516 8.93948 9.09498 9.62538 11.09942 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013581 B = 0.005051 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.133394 B = 5542.195189 C = 6874.796139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.123 3.877 3 C -0.153 4.153 4 N -0.583 5.583 5 C 0.248 3.752 6 C -0.516 4.516 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.897 5.897 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.276 1.276 14 C 0.556 3.444 15 O -0.512 6.512 16 C -0.045 4.045 17 C -0.118 4.118 18 C 0.106 3.894 19 F -0.135 7.135 20 C -0.130 4.130 21 C -0.083 4.083 22 C -0.064 4.064 23 C -0.165 4.165 24 C 0.130 3.870 25 N -0.438 5.438 26 C 0.146 3.854 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.036 0.964 35 H 0.044 0.956 36 H 0.262 0.738 37 H 0.150 0.850 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.045 -7.497 -18.699 20.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.018 3.982 3 C -0.211 4.211 4 N -0.315 5.315 5 C 0.130 3.870 6 C -0.555 4.555 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.536 5.536 10 Si 0.722 3.278 11 H -0.204 1.204 12 H -0.213 1.213 13 H -0.202 1.202 14 C 0.340 3.660 15 O -0.388 6.388 16 C -0.049 4.049 17 C -0.139 4.139 18 C 0.087 3.913 19 F -0.113 7.113 20 C -0.150 4.150 21 C -0.085 4.085 22 C -0.090 4.090 23 C -0.185 4.185 24 C -0.042 4.042 25 N -0.145 5.145 26 C 0.023 3.977 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.168 0.832 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.770 -7.403 -17.142 19.049 hybrid contribution 0.861 0.330 -0.756 1.192 sum 4.630 -7.073 -17.898 19.794 Atomic orbital electron populations 1.22203 0.95551 1.01666 1.02687 1.21213 0.93990 0.94643 0.88333 1.22087 1.01605 0.95238 1.02158 1.48270 1.53259 1.20795 1.09186 1.19272 0.96685 0.94079 0.77001 1.21388 1.06167 1.25660 1.02318 0.92363 1.24897 0.96029 0.97054 0.96072 1.69920 1.30882 1.43268 1.09518 0.86613 0.82951 0.80748 0.77443 1.20356 1.21298 1.20199 1.17623 0.79334 0.82075 0.86937 1.90797 1.52052 1.58402 1.37507 1.20129 0.91278 0.98067 0.95426 1.21418 1.01058 1.00002 0.91429 1.17121 0.85024 1.01551 0.87645 1.91528 1.60078 1.92841 1.66880 1.20912 0.90667 1.02775 1.00606 1.18477 0.94495 1.01208 0.94332 1.21378 0.90971 0.96797 0.99850 1.21975 1.00886 1.00705 0.94915 1.23159 0.93421 0.92623 0.95036 1.68165 0.99939 1.13578 1.32784 1.18621 0.92595 0.96991 0.89500 0.91177 0.92031 0.93003 0.90548 0.92582 0.93318 0.90056 0.94632 0.93798 0.92786 0.83208 0.83850 0.84111 0.84231 0.82042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.05 37.16 0.34 -2.06 16 2 C 0.12 2.11 2.51 -67.93 -0.17 1.94 16 3 C -0.15 -2.68 8.34 37.16 0.31 -2.37 16 4 N -0.58 -12.72 2.38 -168.72 -0.40 -13.12 16 5 C 0.25 6.47 4.47 -5.20 -0.02 6.45 16 6 C -0.52 -14.53 7.85 -34.45 -0.27 -14.80 16 7 H 0.06 1.66 7.52 -52.48 -0.39 1.27 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 9 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 10 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.56 12.47 6.81 -12.51 -0.09 12.38 16 15 O -0.51 -13.71 16.39 5.27 0.09 -13.62 16 16 C -0.04 -0.80 4.85 -104.62 -0.51 -1.31 16 17 C -0.12 -1.70 7.36 -39.09 -0.29 -1.98 16 18 C 0.11 1.31 7.22 -39.88 -0.29 1.02 16 19 F -0.13 -1.58 17.24 2.25 0.04 -1.54 16 20 C -0.13 -1.43 9.71 -39.38 -0.38 -1.81 16 21 C -0.08 -1.06 5.74 -106.83 -0.61 -1.68 16 22 C -0.06 -0.62 9.89 -39.19 -0.39 -1.01 16 23 C -0.16 -1.60 10.03 -39.79 -0.40 -2.00 16 24 C 0.13 1.73 11.15 -17.44 -0.19 1.54 16 25 N -0.44 -8.02 9.59 -10.76 -0.10 -8.12 16 26 C 0.15 2.49 6.60 -84.57 -0.56 1.93 16 27 H 0.07 1.15 6.91 -51.93 -0.36 0.79 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.71 7.25 -51.93 -0.38 0.33 16 30 H 0.08 1.18 4.65 -51.93 -0.24 0.94 16 31 H 0.06 1.06 7.95 -51.93 -0.41 0.64 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 1.62 6.93 -51.93 -0.36 1.26 16 34 H 0.04 0.93 6.72 -51.93 -0.35 0.58 16 35 H 0.04 1.30 7.37 -51.93 -0.38 0.92 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.15 1.98 6.35 -52.48 -0.33 1.65 16 38 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 39 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16 40 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.16 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 345.25 15.07 5.20 5.20 Total: -1.00 -34.64 345.25 -7.96 -42.60 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.88 Total: -0.46 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -3.62 Total: -2.12 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: 0.23 Total: -47.11 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.09 Total: -13.62 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.64 -7.96 -42.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535050631.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.028 kcal (2) G-P(sol) polarization free energy of solvation -34.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds