Wall clock time and date at job start Tue Mar 31 2020 11:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.47066 * 2 1 4 4 N 1.46500 * 109.47006 * 119.99464 * 2 1 3 5 5 C 1.46499 * 120.00449 * 294.09156 * 4 2 1 6 6 C 1.50696 * 109.47376 * 270.00169 * 5 4 2 7 7 H 1.08005 * 120.00198 * 0.02562 * 6 5 4 8 8 C 1.37868 * 120.00255 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00123 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00267 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46951 * 60.00080 * 10 8 6 12 12 H 1.48499 * 109.47153 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47223 * 300.00047 * 10 8 6 14 14 C 1.34777 * 119.99517 * 114.09467 * 4 2 1 15 15 O 1.21607 * 120.00006 * 184.18561 * 14 4 2 16 16 C 1.47446 * 120.00059 * 4.18623 * 14 4 2 17 17 C 1.38714 * 120.31580 * 304.47732 * 16 14 4 18 18 C 1.39100 * 120.69825 * 180.02562 * 17 16 14 19 19 F 1.35102 * 119.49743 * 179.97438 * 18 17 16 20 20 C 1.36532 * 121.00053 * 359.97438 * 18 17 16 21 21 C 1.40408 * 120.07359 * 359.95924 * 20 18 17 22 22 C 1.40814 * 121.24453 * 180.27300 * 21 20 18 23 23 C 1.36627 * 118.16102 * 180.26068 * 22 21 20 24 24 C 1.39243 * 119.90606 * 359.50907 * 23 22 21 25 25 N 1.31221 * 121.69650 * 0.28353 * 24 23 22 26 26 C 1.33356 * 121.35621 * 359.96799 * 25 24 23 27 27 H 1.09003 * 109.47140 * 300.00021 * 1 2 3 28 28 H 1.09000 * 109.47315 * 60.00024 * 1 2 3 29 29 H 1.08995 * 109.47074 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47263 * 239.99643 * 2 1 3 31 31 H 1.08995 * 109.47148 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47034 * 300.00148 * 3 2 1 33 33 H 1.09003 * 109.47159 * 59.99990 * 3 2 1 34 34 H 1.08999 * 109.47065 * 29.99993 * 5 4 2 35 35 H 1.08997 * 109.47274 * 149.99847 * 5 4 2 36 36 H 0.97002 * 120.00632 * 180.02562 * 9 8 6 37 37 H 1.08003 * 119.64988 * 0.02991 * 17 16 14 38 38 H 1.08004 * 119.96585 * 179.97438 * 20 18 17 39 39 H 1.08005 * 120.92150 * 0.02712 * 22 21 20 40 40 H 1.07994 * 120.05143 * 179.79611 * 23 22 21 41 41 H 1.08002 * 119.15255 * 180.25170 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7743 -0.1190 2.5229 6 6 2.9134 0.7954 2.8934 7 1 3.7367 0.9371 2.2088 8 6 2.9041 1.4519 4.1056 9 7 1.9009 1.2806 4.9386 10 14 4.3165 2.5848 4.5652 11 1 4.4191 3.6784 3.5657 12 1 4.0684 3.1651 5.9094 13 1 5.5845 1.8121 4.5854 14 6 2.6922 -1.8515 1.0762 15 8 3.0311 -2.4635 2.0709 16 6 3.0185 -2.3797 -0.2612 17 6 2.0144 -2.5908 -1.1947 18 6 2.3131 -3.0893 -2.4585 19 9 1.3161 -3.2862 -3.3487 20 6 3.5986 -3.3825 -2.8130 21 6 4.6441 -3.1817 -1.8976 22 6 5.9794 -3.4705 -2.2390 23 6 6.9463 -3.2565 -1.2978 24 6 6.5980 -2.7562 -0.0459 25 7 5.3526 -2.4846 0.2659 26 6 4.3616 -2.6758 -0.6057 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 0.8433 0.4477 2.5087 35 1 1.6996 -0.9219 3.2563 36 1 1.8942 1.7428 5.7914 37 1 0.9898 -2.3658 -0.9376 38 1 3.8116 -3.7692 -3.7987 39 1 6.2318 -3.8541 -3.2166 40 1 7.9800 -3.4706 -1.5259 41 1 7.3727 -2.5878 0.6876 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000535050631.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:28 Heat of formation + Delta-G solvation = -41.146941 kcal Electronic energy + Delta-G solvation = -26745.501055 eV Core-core repulsion = 22925.222332 eV Total energy + Delta-G solvation = -3820.278723 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.00118 -42.12362 -40.60259 -37.80881 -37.58416 -35.04218 -34.48639 -32.51102 -31.78100 -31.13453 -29.28297 -28.04182 -26.05158 -25.25412 -24.57881 -23.85725 -22.53678 -20.29883 -19.72681 -18.65410 -18.62714 -18.35470 -17.74674 -16.97824 -16.73285 -16.59095 -16.20385 -16.04037 -15.69881 -15.36435 -15.21379 -14.90471 -14.72247 -14.42858 -14.18512 -14.00254 -13.76452 -13.46389 -13.39130 -13.21339 -12.92587 -12.79851 -12.67312 -12.60231 -12.44705 -12.30433 -12.11445 -11.80650 -11.59676 -11.51799 -10.89572 -10.62042 -10.32767 -9.82359 -9.51936 -9.31796 -8.20484 -6.32075 -0.93293 -0.39390 0.75720 1.33369 1.38130 1.45012 1.53552 1.80931 2.24552 2.40254 2.92731 3.03205 3.09094 3.18444 3.34409 3.61729 3.75254 3.80965 3.90427 3.99070 4.16374 4.20914 4.33418 4.35448 4.52462 4.57876 4.74520 4.77508 4.80672 4.84990 4.93915 4.97472 5.00916 5.05635 5.14984 5.20069 5.38546 5.44764 5.48453 5.60627 5.71520 5.84361 6.09337 6.66520 6.75056 6.98897 7.26011 7.41814 8.87018 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013581 B = 0.005051 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.133394 B = 5542.195189 C = 6874.796139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.117 3.883 3 C -0.146 4.146 4 N -0.588 5.588 5 C 0.267 3.733 6 C -0.525 4.525 7 H 0.047 0.953 8 C 0.009 3.991 9 N -0.928 5.928 10 Si 0.960 3.040 11 H -0.261 1.261 12 H -0.276 1.276 13 H -0.281 1.281 14 C 0.552 3.448 15 O -0.577 6.577 16 C -0.090 4.090 17 C -0.100 4.100 18 C 0.095 3.905 19 F -0.128 7.128 20 C -0.090 4.090 21 C -0.095 4.095 22 C -0.043 4.043 23 C -0.159 4.159 24 C 0.124 3.876 25 N -0.518 5.518 26 C 0.122 3.878 27 H 0.046 0.954 28 H 0.101 0.899 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.034 0.966 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.031 0.969 35 H -0.006 1.006 36 H 0.266 0.734 37 H 0.154 0.846 38 H 0.193 0.807 39 H 0.195 0.805 40 H 0.186 0.814 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.727 -7.899 -23.472 25.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.014 3.986 3 C -0.204 4.204 4 N -0.319 5.319 5 C 0.147 3.853 6 C -0.564 4.564 7 H 0.065 0.935 8 C -0.189 4.189 9 N -0.568 5.568 10 Si 0.785 3.215 11 H -0.186 1.186 12 H -0.201 1.201 13 H -0.207 1.207 14 C 0.339 3.661 15 O -0.457 6.457 16 C -0.094 4.094 17 C -0.121 4.121 18 C 0.075 3.925 19 F -0.106 7.106 20 C -0.110 4.110 21 C -0.097 4.097 22 C -0.069 4.069 23 C -0.178 4.178 24 C -0.048 4.048 25 N -0.227 5.227 26 C 0.000 4.000 27 H 0.065 0.935 28 H 0.119 0.881 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.053 0.947 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.012 0.988 36 H 0.075 0.925 37 H 0.172 0.828 38 H 0.210 0.790 39 H 0.212 0.788 40 H 0.203 0.797 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.434 -7.786 -21.971 23.934 hybrid contribution 0.417 0.369 0.635 0.845 sum 5.851 -7.417 -21.335 23.333 Atomic orbital electron populations 1.22169 0.93360 1.02505 1.03429 1.21571 0.95691 0.94162 0.87141 1.22017 1.00183 0.95541 1.02668 1.48282 1.53420 1.21147 1.09006 1.18684 0.96038 0.91931 0.78676 1.21533 1.06258 1.26037 1.02541 0.93487 1.25761 0.98663 0.98610 0.95895 1.70039 1.32666 1.44227 1.09914 0.85577 0.79101 0.78938 0.77875 1.18578 1.20120 1.20674 1.18388 0.77728 0.81384 0.88551 1.90721 1.54377 1.60267 1.40373 1.19672 0.93309 1.02673 0.93779 1.21433 1.00311 0.98574 0.91815 1.16971 0.85940 1.02661 0.86898 1.91552 1.59941 1.92886 1.66257 1.21404 0.89152 0.98766 1.01631 1.18751 0.96856 1.01314 0.92791 1.22004 0.88958 0.94192 1.01696 1.22365 1.03309 0.99163 0.92968 1.23642 0.92254 0.91654 0.97244 1.68065 1.02058 1.17255 1.35290 1.18817 0.91781 0.98022 0.91400 0.93516 0.88052 0.92191 0.88163 0.94703 0.88985 0.93190 0.95136 0.98798 0.92507 0.82827 0.78995 0.78752 0.79680 0.81130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.56 9.05 71.98 0.65 -3.91 16 2 C 0.12 4.10 2.51 44.99 0.11 4.22 16 3 C -0.15 -5.20 8.34 71.98 0.60 -4.60 16 4 N -0.59 -27.60 2.38 -805.97 -1.92 -29.53 16 5 C 0.27 15.20 4.47 85.63 0.38 15.58 16 6 C -0.53 -31.52 7.85 25.60 0.20 -31.32 16 7 H 0.05 2.86 7.52 -2.91 -0.02 2.84 16 8 C 0.01 0.55 5.46 84.65 0.46 1.02 16 9 N -0.93 -57.74 13.29 21.44 0.28 -57.45 16 10 Si 0.96 46.77 29.54 68.60 2.03 48.80 16 11 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 13 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 14 C 0.55 26.86 6.81 86.67 0.59 27.45 16 15 O -0.58 -34.18 16.39 -4.05 -0.07 -34.25 16 16 C -0.09 -3.37 4.85 -19.86 -0.10 -3.47 16 17 C -0.10 -2.83 7.36 22.59 0.17 -2.66 16 18 C 0.09 2.03 7.22 22.08 0.16 2.19 16 19 F -0.13 -2.51 17.24 44.97 0.78 -1.74 16 20 C -0.09 -1.55 9.71 22.40 0.22 -1.33 16 21 C -0.09 -2.12 5.74 -21.29 -0.12 -2.25 16 22 C -0.04 -0.61 9.89 22.52 0.22 -0.38 16 23 C -0.16 -2.46 10.03 22.13 0.22 -2.24 16 24 C 0.12 3.24 11.15 85.03 0.95 4.19 16 25 N -0.52 -19.86 9.59 -187.94 -1.80 -21.66 16 26 C 0.12 4.21 6.60 40.62 0.27 4.48 16 27 H 0.05 1.57 6.91 -2.39 -0.02 1.56 16 28 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.06 1.63 7.25 -2.39 -0.02 1.61 16 30 H 0.10 3.07 4.65 -2.39 -0.01 3.06 16 31 H 0.03 1.35 7.95 -2.39 -0.02 1.33 16 32 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.05 2.08 6.93 -2.39 -0.02 2.06 16 34 H 0.03 1.74 6.72 -2.39 -0.02 1.72 16 35 H -0.01 -0.40 7.37 -2.39 -0.02 -0.42 16 36 H 0.27 15.56 8.31 -92.71 -0.77 14.78 16 37 H 0.15 4.00 6.35 -2.91 -0.02 3.98 16 38 H 0.19 1.44 8.06 -2.91 -0.02 1.42 16 39 H 0.20 0.69 8.06 -2.91 -0.02 0.67 16 40 H 0.19 1.14 8.06 -2.91 -0.02 1.12 16 41 H 0.17 3.74 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -86.75 345.25 5.35 -81.40 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 1.06 Total: 7.45 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 4.99 Total: 6.97 kcal Atomic # 7 Polarization: -105.20 SS G_CDS: -3.44 Total: -108.64 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -0.07 Total: -34.25 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.78 Total: -1.74 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -86.75 5.35 -81.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535050631.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.255 kcal (2) G-P(sol) polarization free energy of solvation -86.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds