Wall clock time and date at job start Tue Mar 31 2020 11:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.47004 * 2 1 4 4 C 1.33387 * 125.20164 * 90.00567 * 3 2 1 5 5 C 1.38428 * 114.91956 * 179.79265 * 4 3 2 6 6 C 1.33384 * 114.92124 * 0.42690 * 5 4 3 7 7 C 1.50706 * 125.20692 * 179.86056 * 6 5 4 8 8 N 1.46898 * 109.47027 * 89.71770 * 7 6 5 9 9 C 1.46904 * 111.00233 * 66.04779 * 8 7 6 10 10 C 1.50694 * 109.47275 * 193.95628 * 9 8 7 11 11 H 1.08004 * 120.00314 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99944 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00091 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 120.00143 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.47232 * 90.00321 * 14 12 10 16 16 H 1.48501 * 109.47186 * 210.00371 * 14 12 10 17 17 H 1.48507 * 109.47034 * 330.00136 * 14 12 10 18 18 C 1.46898 * 111.00026 * 190.00745 * 8 7 6 19 19 C 1.50707 * 109.46995 * 170.00310 * 18 8 7 20 20 C 1.38227 * 119.62059 * 95.01860 * 19 18 8 21 21 C 1.38627 * 119.15702 * 179.74122 * 20 19 18 22 22 C 1.38669 * 118.42389 * 0.47826 * 21 20 19 23 23 C 1.38186 * 119.16143 * 359.49762 * 22 21 20 24 24 N 1.31856 * 119.61137 * 274.99289 * 19 18 8 25 25 S 1.75884 * 125.20340 * 270.02444 * 3 2 1 26 26 H 1.09008 * 109.47004 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46790 * 299.99476 * 1 2 3 28 28 H 1.08997 * 109.47180 * 60.00258 * 1 2 3 29 29 H 1.09006 * 109.46710 * 240.00010 * 2 1 3 30 30 H 1.08996 * 109.47237 * 120.00524 * 2 1 3 31 31 H 1.08002 * 122.53964 * 0.02562 * 4 3 2 32 32 H 1.08000 * 122.54323 * 180.27191 * 5 4 3 33 33 H 1.08997 * 109.46789 * 329.72181 * 7 6 5 34 34 H 1.08990 * 109.47156 * 209.71848 * 7 6 5 35 35 H 1.08997 * 109.46648 * 313.95426 * 9 8 7 36 36 H 1.08999 * 109.46792 * 73.95385 * 9 8 7 37 37 H 0.96999 * 120.00200 * 180.02562 * 13 12 10 38 38 H 1.08997 * 109.47637 * 49.99766 * 18 8 7 39 39 H 1.09003 * 109.46634 * 289.99763 * 18 8 7 40 40 H 1.07998 * 120.41916 * 359.95342 * 20 19 18 41 41 H 1.08008 * 120.78688 * 180.22921 * 21 20 19 42 42 H 1.08002 * 120.42244 * 179.78279 * 22 21 20 43 43 H 1.07996 * 119.61757 * 180.25243 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2887 2.1457 1.0899 5 6 2.7470 3.4283 0.8429 6 6 2.8542 3.7480 -0.4477 7 6 3.3247 5.0783 -0.9771 8 7 4.7833 5.0486 -1.1493 9 6 5.1701 4.0976 -2.2000 10 6 6.6520 3.8359 -2.1199 11 1 7.2471 4.3271 -1.3642 12 6 7.2484 2.9701 -3.0119 13 7 8.5416 2.7412 -2.9417 14 14 6.2193 2.1210 -4.3193 15 1 6.1818 2.9615 -5.5429 16 1 6.8203 0.8021 -4.6430 17 1 4.8378 1.9241 -3.8114 18 6 5.3071 6.3909 -1.4351 19 6 6.8122 6.3687 -1.3624 20 6 7.5495 6.1926 -2.5182 21 6 8.9336 6.1792 -2.4410 22 6 9.5268 6.3341 -1.1972 23 6 8.7245 6.5061 -0.0853 24 7 7.4105 6.5182 -0.1969 25 16 2.3697 2.3769 -1.4372 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.1528 1.7598 2.0895 32 1 2.9963 4.1189 1.6350 33 1 3.0581 5.8650 -0.2714 34 1 2.8494 5.2756 -1.9378 35 1 4.6280 3.1623 -2.0611 36 1 4.9275 4.5167 -3.1765 37 1 8.9612 2.1324 -3.5694 38 1 4.9182 7.0966 -0.7011 39 1 4.9961 6.6971 -2.4339 40 1 7.0537 6.0704 -3.4698 41 1 9.5355 6.0471 -3.3280 42 1 10.6023 6.3252 -1.0993 43 1 9.1788 6.6316 0.8864 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000538738935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:47 Heat of formation + Delta-G solvation = 82.234465 kcal Electronic energy + Delta-G solvation = -24167.587588 eV Core-core repulsion = 20918.872260 eV Total energy + Delta-G solvation = -3248.715328 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.44851 -37.99150 -36.57952 -33.75332 -32.57547 -31.48469 -31.03272 -29.18515 -27.98875 -26.07506 -24.27195 -22.82670 -22.46649 -22.05682 -21.40252 -20.10764 -18.29416 -17.12498 -16.55267 -15.90566 -15.45118 -15.13502 -14.82697 -14.60943 -14.50593 -14.13638 -13.75183 -13.45243 -13.20386 -12.89128 -12.70922 -12.44514 -12.39175 -12.12219 -11.90025 -11.73470 -11.68218 -11.63860 -11.30073 -11.14350 -10.87699 -10.78500 -10.53806 -10.32911 -10.19502 -9.85474 -9.38246 -8.84216 -8.54763 -8.46875 -8.14690 -7.99116 -7.64307 -7.46049 -6.05345 -3.95680 1.33152 1.96796 2.14417 2.37716 2.41364 3.11111 3.23564 3.33299 3.38207 4.40017 4.57405 4.84465 5.05977 5.09647 5.16781 5.23489 5.27214 5.27833 5.50517 5.56064 5.70351 5.76612 5.78114 5.81113 5.81767 5.95388 5.96179 6.03078 6.04564 6.11638 6.13877 6.32870 6.51959 6.59732 6.65335 6.68594 6.76790 6.84999 6.90807 7.13329 7.26102 7.57226 7.71560 7.82291 7.93444 8.62120 9.01060 9.06753 9.53908 11.04050 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014832 B = 0.004790 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.341664 B = 5843.585199 C = 6947.943345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.051 4.051 3 C -0.187 4.187 4 C -0.135 4.135 5 C -0.125 4.125 6 C -0.149 4.149 7 C 0.123 3.877 8 N -0.514 5.514 9 C 0.148 3.852 10 C -0.496 4.496 11 H 0.098 0.902 12 C 0.073 3.927 13 N -0.885 5.885 14 Si 0.855 3.145 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.260 1.260 18 C 0.119 3.881 19 C 0.151 3.849 20 C -0.081 4.081 21 C -0.078 4.078 22 C -0.167 4.167 23 C 0.066 3.934 24 N -0.479 5.479 25 S 0.095 5.905 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.086 0.914 34 H 0.034 0.966 35 H 0.041 0.959 36 H -0.018 1.018 37 H 0.261 0.739 38 H 0.075 0.925 39 H 0.037 0.963 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.811 2.327 3.354 11.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.091 4.091 3 C -0.305 4.305 4 C -0.166 4.166 5 C -0.155 4.155 6 C -0.267 4.267 7 C -0.007 4.007 8 N -0.238 5.238 9 C 0.022 3.978 10 C -0.534 4.534 11 H 0.115 0.885 12 C -0.129 4.129 13 N -0.523 5.523 14 Si 0.682 3.318 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.185 1.185 18 C -0.009 4.009 19 C 0.011 3.989 20 C -0.102 4.102 21 C -0.103 4.103 22 C -0.188 4.188 23 C -0.089 4.089 24 N -0.189 5.189 25 S 0.360 5.640 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.150 0.850 32 H 0.155 0.845 33 H 0.104 0.896 34 H 0.052 0.948 35 H 0.058 0.942 36 H -0.001 1.001 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.055 0.945 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.050 1.914 2.895 11.582 hybrid contribution 0.135 -0.602 -0.868 1.065 sum -10.915 1.312 2.027 11.179 Atomic orbital electron populations 1.21777 0.94720 1.01515 1.02286 1.20041 0.95759 0.90269 1.02992 1.24419 1.09290 1.00635 0.96146 1.19970 1.03494 0.94379 0.98723 1.19954 1.02726 0.96912 0.95939 1.24258 1.06813 0.99351 0.96236 1.20521 0.89718 0.91574 0.98848 1.61998 1.07005 1.06717 1.48074 1.20500 0.98601 0.91853 0.86866 1.21414 0.90616 1.25292 1.16101 0.88459 1.24810 0.94673 0.96137 0.97310 1.69891 1.09352 1.36036 1.36985 0.87145 0.82067 0.79787 0.82783 1.20533 1.21249 1.18458 1.20711 0.90457 0.90894 0.98846 1.20428 0.95019 0.95016 0.88401 1.21479 0.94188 0.95247 0.99257 1.21079 0.94701 0.97237 0.97326 1.21778 1.00099 1.02732 0.94158 1.22225 0.89388 0.99582 0.97705 1.67260 1.11321 1.13446 1.26887 1.84355 1.63871 1.06026 1.09731 0.92409 0.92424 0.92599 0.91072 0.90314 0.85013 0.84501 0.89566 0.94819 0.94168 1.00052 0.92869 0.90616 0.94455 0.86458 0.86567 0.86683 0.84583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.89 37.16 0.37 -1.06 16 2 C -0.05 -0.61 6.43 -27.88 -0.18 -0.79 16 3 C -0.19 -2.81 5.76 -36.01 -0.21 -3.01 16 4 C -0.13 -2.00 10.05 -41.21 -0.41 -2.41 16 5 C -0.12 -2.01 10.05 -41.21 -0.41 -2.42 16 6 C -0.15 -2.58 5.29 -36.00 -0.19 -2.77 16 7 C 0.12 2.09 5.46 -4.97 -0.03 2.07 16 8 N -0.51 -10.59 4.55 -238.97 -1.09 -11.68 16 9 C 0.15 3.48 3.62 -4.98 -0.02 3.46 16 10 C -0.50 -13.25 6.33 -34.44 -0.22 -13.47 16 11 H 0.10 2.84 5.17 -52.48 -0.27 2.57 16 12 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 13 N -0.88 -25.44 13.96 55.43 0.77 -24.67 16 14 Si 0.85 20.82 27.47 -169.99 -4.67 16.16 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 18 C 0.12 2.25 5.28 -4.97 -0.03 2.23 16 19 C 0.15 3.20 4.01 -82.58 -0.33 2.86 16 20 C -0.08 -1.72 6.30 -39.44 -0.25 -1.97 16 21 C -0.08 -1.59 10.11 -39.28 -0.40 -1.99 16 22 C -0.17 -3.23 10.11 -39.44 -0.40 -3.63 16 23 C 0.07 1.31 11.18 -17.55 -0.20 1.11 16 24 N -0.48 -10.28 10.16 -9.47 -0.10 -10.38 16 25 S 0.10 1.63 21.53 -107.50 -2.31 -0.69 16 26 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.14 2.02 8.06 -52.49 -0.42 1.59 16 33 H 0.09 1.26 7.93 -51.93 -0.41 0.85 16 34 H 0.03 0.55 8.12 -51.93 -0.42 0.12 16 35 H 0.04 0.98 4.39 -51.93 -0.23 0.75 16 36 H -0.02 -0.42 7.41 -51.93 -0.38 -0.81 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.08 1.28 7.93 -51.93 -0.41 0.87 16 39 H 0.04 0.65 7.91 -51.93 -0.41 0.24 16 40 H 0.12 2.46 7.99 -52.49 -0.42 2.04 16 41 H 0.12 2.24 8.06 -52.48 -0.42 1.82 16 42 H 0.12 1.90 8.06 -52.49 -0.42 1.47 16 43 H 0.14 2.26 8.06 -52.49 -0.42 1.83 16 LS Contribution 359.92 15.07 5.42 5.42 Total: -1.00 -30.55 359.92 -11.32 -41.87 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.35 Total: 3.86 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -3.00 Total: -19.89 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.41 Total: -46.73 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.16 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.31 Total: -0.69 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.55 -11.32 -41.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000538738935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.101 kcal (2) G-P(sol) polarization free energy of solvation -30.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds