Wall clock time and date at job start Tue Mar 31 2020 10:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38775 * 120.06373 * 2 1 4 4 N 1.39947 * 120.04151 * 359.95033 * 3 2 1 5 5 C 1.34776 * 120.00295 * 214.60916 * 4 3 2 6 6 O 1.21586 * 119.99791 * 355.75749 * 5 4 3 7 7 N 1.34778 * 119.99887 * 175.76079 * 5 4 3 8 8 C 1.46496 * 120.00011 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47429 * 179.97438 * 8 7 5 10 10 C 1.50694 * 109.47449 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99954 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00248 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00095 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00219 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47202 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47119 * 120.00010 * 14 12 10 17 17 H 1.48495 * 109.47309 * 239.99909 * 14 12 10 18 18 C 1.38887 * 119.92605 * 179.97438 * 3 2 1 19 19 C 1.38179 * 120.05577 * 359.97438 * 18 3 2 20 20 C 1.38147 * 120.13835 * 359.72529 * 19 18 3 21 21 C 1.38675 * 120.06812 * 179.97438 * 2 1 3 22 22 N 1.40259 * 120.03372 * 0.02773 * 21 2 1 23 23 C 1.35067 * 127.39336 * 130.69127 * 22 21 2 24 24 N 1.30733 * 107.27732 * 179.97438 * 23 22 21 25 25 N 1.28430 * 110.64602 * 359.97438 * 24 23 22 26 26 N 1.28942 * 110.20303 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.47141 * 274.94404 * 1 2 3 28 28 H 1.08999 * 109.47123 * 34.94900 * 1 2 3 29 29 H 1.09011 * 109.46701 * 154.94543 * 1 2 3 30 30 H 0.97001 * 119.99729 * 34.60586 * 4 3 2 31 31 H 0.96997 * 119.99979 * 359.97438 * 7 5 4 32 32 H 1.08998 * 109.46912 * 299.99910 * 8 7 5 33 33 H 1.09004 * 109.47379 * 59.99393 * 8 7 5 34 34 H 1.09002 * 109.46943 * 300.00411 * 9 8 7 35 35 H 1.09004 * 109.47123 * 59.99497 * 9 8 7 36 36 H 0.96995 * 120.00497 * 180.02562 * 13 12 10 37 37 H 1.08000 * 119.97268 * 180.02562 * 18 3 2 38 38 H 1.08005 * 119.93144 * 180.02562 * 19 18 3 39 39 H 1.07993 * 119.96768 * 180.30000 * 20 19 18 40 40 H 1.08000 * 126.36382 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2022 1.2011 0.0000 4 7 1.5047 2.4143 -0.0011 5 6 2.0021 3.4771 -0.6641 6 8 3.0929 3.4054 -1.1963 7 7 1.2904 4.6193 -0.7370 8 6 1.8308 5.7743 -1.4581 9 6 0.8319 6.9312 -1.3899 10 6 1.3880 8.1195 -2.1311 11 1 2.3573 8.0561 -2.6033 12 6 0.6600 9.2880 -2.2056 13 7 -0.5200 9.3655 -1.6302 14 14 1.3498 10.7613 -3.1239 15 1 2.6844 10.4189 -3.6778 16 1 0.4328 11.1267 -4.2334 17 1 1.4801 11.9093 -2.1911 18 6 3.5911 1.1977 0.0005 19 6 4.2803 0.0001 0.0016 20 6 3.5907 -1.1970 0.0079 21 6 2.2018 -1.2001 0.0005 22 7 1.5027 -2.4161 0.0005 23 6 1.7007 -3.4760 -0.8129 24 7 0.8349 -4.3943 -0.4718 25 7 0.1033 -3.9873 0.5022 26 7 0.4466 -2.7937 0.8486 27 1 -0.3633 0.0886 1.0238 28 1 -0.3633 0.8423 -0.5887 29 1 -0.3633 -0.9311 -0.4353 30 1 0.6632 2.4903 0.4754 31 1 0.4201 4.6763 -0.3126 32 1 2.7724 6.0795 -1.0017 33 1 2.0028 5.5042 -2.5000 34 1 -0.1096 6.6257 -1.8464 35 1 0.6595 7.2014 -0.3480 36 1 -1.0324 10.1874 -1.6829 37 1 4.1329 2.1320 0.0010 38 1 5.3603 -0.0002 0.0024 39 1 4.1321 -2.1314 0.0136 40 1 2.4374 -3.5511 -1.5990 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543286269.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:56 Heat of formation + Delta-G solvation = 119.466462 kcal Electronic energy + Delta-G solvation = -24820.694457 eV Core-core repulsion = 21059.593167 eV Total energy + Delta-G solvation = -3761.101290 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -43.52097 -40.96222 -39.28162 -36.04125 -34.95504 -34.70011 -33.02518 -32.75310 -32.27138 -30.26763 -29.14027 -27.44878 -25.32900 -24.85149 -23.48575 -22.78458 -21.75925 -21.15736 -20.87190 -18.86553 -18.59011 -17.02647 -16.71041 -16.45947 -16.26255 -16.08028 -15.75032 -15.19668 -14.67771 -14.58825 -14.40341 -13.88518 -13.76020 -13.74424 -13.36667 -13.03886 -12.86732 -12.59368 -12.37025 -12.08647 -11.95101 -11.54297 -11.37589 -11.30134 -11.13979 -10.80836 -10.70107 -10.63730 -10.42257 -10.12927 -9.70168 -9.35727 -9.11266 -8.82691 -8.52027 -8.32908 -6.17369 -4.20595 0.18503 0.79507 0.99664 1.44523 1.92215 2.56798 2.98480 3.23149 3.31255 3.35739 3.36658 3.76087 4.15969 4.19575 4.28964 4.39776 4.43303 4.53017 4.68892 4.95704 4.96336 5.05874 5.09340 5.20123 5.22823 5.23826 5.68633 5.71917 5.82162 5.87114 6.00532 6.11385 6.21307 6.22462 6.59322 6.61727 6.71032 6.86143 7.43322 7.50371 7.80721 7.99028 8.05654 8.19287 8.57281 8.85568 9.44858 10.94219 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.031117 B = 0.002154 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.602407 B =12998.800577 C =13582.144859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.090 4.090 3 C 0.192 3.808 4 N -0.689 5.689 5 C 0.698 3.302 6 O -0.578 6.578 7 N -0.728 5.728 8 C 0.138 3.862 9 C 0.012 3.988 10 C -0.522 4.522 11 H 0.061 0.939 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.897 3.103 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.097 4.097 19 C -0.089 4.089 20 C -0.123 4.123 21 C 0.125 3.875 22 N -0.323 5.323 23 C 0.231 3.769 24 N -0.335 5.335 25 N -0.042 5.042 26 N -0.072 5.072 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.409 0.591 31 H 0.397 0.603 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.262 0.738 37 H 0.156 0.844 38 H 0.141 0.859 39 H 0.133 0.867 40 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.889 -22.179 4.498 23.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.095 4.095 3 C 0.094 3.906 4 N -0.337 5.337 5 C 0.399 3.601 6 O -0.455 6.455 7 N -0.381 5.381 8 C 0.016 3.984 9 C -0.025 4.025 10 C -0.561 4.561 11 H 0.079 0.921 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.725 3.275 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.118 4.118 19 C -0.108 4.108 20 C -0.144 4.144 21 C 0.034 3.966 22 N -0.114 5.114 23 C -0.066 4.066 24 N -0.184 5.184 25 N -0.038 5.038 26 N -0.057 5.057 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.245 0.755 31 H 0.230 0.770 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.173 0.827 38 H 0.159 0.841 39 H 0.151 0.849 40 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 5.599 -22.547 4.755 23.714 hybrid contribution 0.145 1.445 -0.517 1.541 sum 5.743 -21.103 4.237 22.277 Atomic orbital electron populations 1.20751 0.89732 1.03299 1.03360 1.19455 0.96846 0.90087 1.03126 1.17064 0.91003 0.83692 0.98795 1.42727 1.26707 1.09189 1.55052 1.16029 0.84536 0.80209 0.79361 1.90895 1.20370 1.82644 1.51616 1.45612 1.22069 1.12321 1.58082 1.21718 0.98491 0.83425 0.94783 1.19343 0.93980 0.91134 0.98083 1.21052 1.04173 0.96649 1.34199 0.92109 1.25002 0.94845 0.98928 0.95539 1.69956 1.11861 1.27472 1.43922 0.86444 0.79213 0.82305 0.79536 1.19548 1.20907 1.20902 1.21690 0.92593 1.00292 0.97212 1.20944 1.00545 0.90587 0.98721 1.20955 0.90698 0.99848 1.02945 1.16908 0.89988 0.80826 1.08902 1.48935 1.25566 1.12885 1.24014 1.27534 0.99518 0.83127 0.96449 1.74491 1.06670 1.26056 1.11230 1.78086 1.16636 1.03007 1.06035 1.82760 1.00975 1.09107 1.12852 0.89879 0.90709 0.91652 0.75508 0.76983 0.92338 0.92387 0.95888 0.95863 0.92821 0.82660 0.84101 0.84921 0.74556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 8.60 36.01 0.31 -0.70 16 2 C -0.09 -0.87 5.91 -104.26 -0.62 -1.48 16 3 C 0.19 2.06 6.29 -83.71 -0.53 1.54 16 4 N -0.69 -7.57 4.79 -14.24 -0.07 -7.64 16 5 C 0.70 10.43 8.41 -86.92 -0.73 9.70 16 6 O -0.58 -10.44 13.75 5.29 0.07 -10.36 16 7 N -0.73 -11.22 5.56 -65.23 -0.36 -11.58 16 8 C 0.14 2.69 5.61 -4.04 -0.02 2.67 16 9 C 0.01 0.28 5.09 -27.89 -0.14 0.14 16 10 C -0.52 -13.88 9.11 -34.44 -0.31 -14.19 16 11 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.89 -25.34 13.29 55.43 0.74 -24.60 16 14 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 C -0.10 -1.03 8.69 -39.36 -0.34 -1.37 16 19 C -0.09 -0.68 10.03 -39.64 -0.40 -1.08 16 20 C -0.12 -0.87 9.70 -39.37 -0.38 -1.25 16 21 C 0.13 1.11 6.28 -83.60 -0.53 0.58 16 22 N -0.32 -2.98 3.05 -11.76 -0.04 -3.02 16 23 C 0.23 1.73 12.58 -90.16 -1.13 0.60 16 24 N -0.34 -3.59 12.15 29.64 0.36 -3.23 16 25 N -0.04 -0.53 13.39 60.35 0.81 0.28 16 26 N -0.07 -0.84 12.28 60.35 0.74 -0.09 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.62 7.43 -51.93 -0.39 0.23 16 29 H 0.06 0.65 6.60 -51.92 -0.34 0.30 16 30 H 0.41 3.35 7.96 -40.82 -0.32 3.03 16 31 H 0.40 5.14 8.49 -40.82 -0.35 4.79 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.16 1.93 6.19 -52.49 -0.32 1.61 16 38 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 39 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 40 H 0.24 0.56 8.06 -52.49 -0.42 0.14 16 LS Contribution 348.48 15.07 5.25 5.25 Total: -1.00 -32.96 348.48 -7.09 -40.04 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -4.65 Total: 2.57 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -4.92 Total: -3.35 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 2.18 Total: -49.88 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.07 Total: -10.36 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.96 -7.09 -40.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543286269.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.509 kcal (2) G-P(sol) polarization free energy of solvation -32.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds