Wall clock time and date at job start Tue Mar 31 2020 10:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38775 * 120.06373 * 2 1 4 4 N 1.39947 * 120.04151 * 359.95033 * 3 2 1 5 5 C 1.34776 * 120.00295 * 214.60916 * 4 3 2 6 6 O 1.21586 * 119.99791 * 355.75749 * 5 4 3 7 7 N 1.34778 * 119.99887 * 175.76079 * 5 4 3 8 8 C 1.46496 * 120.00011 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47429 * 179.97438 * 8 7 5 10 10 C 1.50694 * 109.47449 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99954 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00248 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00095 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00219 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47202 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47119 * 120.00010 * 14 12 10 17 17 H 1.48495 * 109.47309 * 239.99909 * 14 12 10 18 18 C 1.38887 * 119.92605 * 179.97438 * 3 2 1 19 19 C 1.38179 * 120.05577 * 359.97438 * 18 3 2 20 20 C 1.38147 * 120.13835 * 359.72529 * 19 18 3 21 21 C 1.38675 * 120.06812 * 179.97438 * 2 1 3 22 22 N 1.40259 * 120.03372 * 0.02773 * 21 2 1 23 23 C 1.35067 * 127.39336 * 130.69127 * 22 21 2 24 24 N 1.30733 * 107.27732 * 179.97438 * 23 22 21 25 25 N 1.28430 * 110.64602 * 359.97438 * 24 23 22 26 26 N 1.28942 * 110.20303 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.47141 * 274.94404 * 1 2 3 28 28 H 1.08999 * 109.47123 * 34.94900 * 1 2 3 29 29 H 1.09011 * 109.46701 * 154.94543 * 1 2 3 30 30 H 0.97001 * 119.99729 * 34.60586 * 4 3 2 31 31 H 0.96997 * 119.99979 * 359.97438 * 7 5 4 32 32 H 1.08998 * 109.46912 * 299.99910 * 8 7 5 33 33 H 1.09004 * 109.47379 * 59.99393 * 8 7 5 34 34 H 1.09002 * 109.46943 * 300.00411 * 9 8 7 35 35 H 1.09004 * 109.47123 * 59.99497 * 9 8 7 36 36 H 0.96995 * 120.00497 * 180.02562 * 13 12 10 37 37 H 1.08000 * 119.97268 * 180.02562 * 18 3 2 38 38 H 1.08005 * 119.93144 * 180.02562 * 19 18 3 39 39 H 1.07993 * 119.96768 * 180.30000 * 20 19 18 40 40 H 1.08000 * 126.36382 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2022 1.2011 0.0000 4 7 1.5047 2.4143 -0.0011 5 6 2.0021 3.4771 -0.6641 6 8 3.0929 3.4054 -1.1963 7 7 1.2904 4.6193 -0.7370 8 6 1.8308 5.7743 -1.4581 9 6 0.8319 6.9312 -1.3899 10 6 1.3880 8.1195 -2.1311 11 1 2.3573 8.0561 -2.6033 12 6 0.6600 9.2880 -2.2056 13 7 -0.5200 9.3655 -1.6302 14 14 1.3498 10.7613 -3.1239 15 1 2.6844 10.4189 -3.6778 16 1 0.4328 11.1267 -4.2334 17 1 1.4801 11.9093 -2.1911 18 6 3.5911 1.1977 0.0005 19 6 4.2803 0.0001 0.0016 20 6 3.5907 -1.1970 0.0079 21 6 2.2018 -1.2001 0.0005 22 7 1.5027 -2.4161 0.0005 23 6 1.7007 -3.4760 -0.8129 24 7 0.8349 -4.3943 -0.4718 25 7 0.1033 -3.9873 0.5022 26 7 0.4466 -2.7937 0.8486 27 1 -0.3633 0.0886 1.0238 28 1 -0.3633 0.8423 -0.5887 29 1 -0.3633 -0.9311 -0.4353 30 1 0.6632 2.4903 0.4754 31 1 0.4201 4.6763 -0.3126 32 1 2.7724 6.0795 -1.0017 33 1 2.0028 5.5042 -2.5000 34 1 -0.1096 6.6257 -1.8464 35 1 0.6595 7.2014 -0.3480 36 1 -1.0324 10.1874 -1.6829 37 1 4.1329 2.1320 0.0010 38 1 5.3603 -0.0002 0.0024 39 1 4.1321 -2.1314 0.0136 40 1 2.4374 -3.5511 -1.5990 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543286269.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:55 Heat of formation + Delta-G solvation = 98.249402 kcal Electronic energy + Delta-G solvation = -24821.614498 eV Core-core repulsion = 21059.593167 eV Total energy + Delta-G solvation = -3762.021331 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.25263 -41.91668 -40.24244 -37.10062 -36.32259 -35.52016 -34.81029 -33.57427 -33.06343 -31.68030 -30.24135 -28.20136 -26.76144 -25.90618 -24.31132 -23.75262 -22.81542 -22.42432 -21.95980 -19.77227 -19.62220 -18.43991 -17.82312 -17.43932 -17.12516 -16.88311 -16.66833 -16.49642 -16.22352 -15.83229 -15.40978 -15.01214 -14.90406 -14.51457 -14.40628 -14.29256 -13.79465 -13.60951 -13.32891 -13.21423 -12.97229 -12.81040 -12.68092 -12.51236 -12.35793 -12.20709 -12.11858 -11.67476 -11.56722 -11.50929 -11.38409 -11.15311 -10.61272 -10.11903 -9.82250 -9.22255 -8.24370 -6.34159 -0.51236 0.09632 0.27850 0.77407 1.20400 1.41337 1.42368 1.51077 1.56693 1.95316 2.40743 2.51813 3.11153 3.12633 3.27281 3.55213 3.61441 3.74587 3.82300 4.08531 4.20196 4.26675 4.35701 4.43453 4.46838 4.52146 4.53412 4.55428 4.86832 4.98459 5.05171 5.13339 5.20197 5.22015 5.34061 5.46119 5.50014 5.59401 5.77307 5.84107 5.88127 6.16285 6.79670 6.90388 7.31110 7.35285 7.39352 8.87593 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.031117 B = 0.002154 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.602407 B =12998.800577 C =13582.144859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.092 4.092 3 C 0.170 3.830 4 N -0.673 5.673 5 C 0.702 3.298 6 O -0.609 6.609 7 N -0.725 5.725 8 C 0.160 3.840 9 C 0.021 3.979 10 C -0.543 4.543 11 H 0.061 0.939 12 C 0.006 3.994 13 N -0.927 5.927 14 Si 0.964 3.036 15 H -0.264 1.264 16 H -0.279 1.279 17 H -0.278 1.278 18 C -0.113 4.113 19 C -0.081 4.081 20 C -0.102 4.102 21 C 0.118 3.882 22 N -0.324 5.324 23 C 0.250 3.750 24 N -0.361 5.361 25 N -0.066 5.066 26 N -0.093 5.093 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.422 0.578 31 H 0.409 0.591 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.008 0.992 35 H 0.010 0.990 36 H 0.265 0.735 37 H 0.133 0.867 38 H 0.169 0.831 39 H 0.169 0.831 40 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.436 -23.396 4.015 24.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C 0.073 3.927 4 N -0.322 5.322 5 C 0.402 3.598 6 O -0.489 6.489 7 N -0.379 5.379 8 C 0.036 3.964 9 C -0.016 4.016 10 C -0.581 4.581 11 H 0.079 0.921 12 C -0.193 4.193 13 N -0.567 5.567 14 Si 0.788 3.212 15 H -0.188 1.188 16 H -0.204 1.204 17 H -0.204 1.204 18 C -0.134 4.134 19 C -0.100 4.100 20 C -0.123 4.123 21 C 0.027 3.973 22 N -0.115 5.115 23 C -0.046 4.046 24 N -0.210 5.210 25 N -0.061 5.061 26 N -0.079 5.079 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.260 0.740 31 H 0.245 0.755 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.027 0.973 35 H 0.028 0.972 36 H 0.074 0.926 37 H 0.151 0.849 38 H 0.187 0.813 39 H 0.186 0.814 40 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges 7.120 -23.812 4.304 25.224 hybrid contribution -0.285 1.714 -0.357 1.773 sum 6.835 -22.099 3.947 23.466 Atomic orbital electron populations 1.20714 0.89529 1.02799 1.03703 1.19485 0.97082 0.90121 1.03047 1.17169 0.91268 0.83535 1.00717 1.42421 1.27062 1.08455 1.54272 1.16011 0.83977 0.80533 0.79258 1.90876 1.21731 1.83290 1.53017 1.45257 1.22713 1.11778 1.58191 1.21145 0.96999 0.83553 0.94655 1.19149 0.94089 0.91813 0.96559 1.21490 1.04329 0.97949 1.34372 0.92081 1.25861 0.95152 1.01866 0.96405 1.70058 1.13048 1.28375 1.45192 0.85414 0.78742 0.78717 0.78285 1.18789 1.20443 1.20390 1.21676 0.92638 1.00724 0.98386 1.21227 1.01875 0.89602 0.97272 1.21299 0.89835 1.00990 1.00217 1.17089 0.90725 0.80367 1.09157 1.48940 1.25210 1.13294 1.24045 1.28466 0.98819 0.81428 0.95936 1.74432 1.07666 1.27459 1.11455 1.78077 1.17579 1.03491 1.06980 1.82713 1.02140 1.09071 1.13955 0.89293 0.90416 0.92697 0.73988 0.75542 0.93104 0.93348 0.97326 0.97209 0.92614 0.84879 0.81340 0.81387 0.69686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.87 8.60 71.24 0.61 -1.26 16 2 C -0.09 -1.65 5.91 -19.63 -0.12 -1.77 16 3 C 0.17 3.50 6.29 38.13 0.24 3.74 16 4 N -0.67 -14.51 4.79 -317.23 -1.52 -16.02 16 5 C 0.70 20.94 8.41 179.05 1.51 22.45 16 6 O -0.61 -22.18 13.75 -3.99 -0.05 -22.23 16 7 N -0.73 -22.46 5.56 -478.54 -2.66 -25.12 16 8 C 0.16 6.35 5.61 86.38 0.48 6.83 16 9 C 0.02 1.02 5.09 29.85 0.15 1.18 16 10 C -0.54 -29.15 9.11 25.60 0.23 -28.91 16 11 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 12 C 0.01 0.32 5.46 84.65 0.46 0.78 16 13 N -0.93 -53.08 13.29 21.45 0.28 -52.79 16 14 Si 0.96 42.49 29.54 68.60 2.03 44.52 16 15 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 16 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 18 C -0.11 -2.28 8.69 22.41 0.19 -2.09 16 19 C -0.08 -1.01 10.03 22.23 0.22 -0.79 16 20 C -0.10 -1.05 9.70 22.41 0.22 -0.83 16 21 C 0.12 1.78 6.28 38.05 0.24 2.02 16 22 N -0.32 -5.24 3.05 -191.12 -0.58 -5.82 16 23 C 0.25 2.99 12.58 180.19 2.27 5.25 16 24 N -0.36 -7.15 12.15 -60.13 -0.73 -7.88 16 25 N -0.07 -1.60 13.39 37.02 0.50 -1.10 16 26 N -0.09 -2.08 12.28 37.02 0.45 -1.63 16 27 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.08 1.23 7.43 -2.39 -0.02 1.22 16 29 H 0.05 1.05 6.60 -2.38 -0.02 1.04 16 30 H 0.42 6.66 7.96 -92.71 -0.74 5.92 16 31 H 0.41 10.58 8.49 -92.71 -0.79 9.79 16 32 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 36 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 37 H 0.13 3.33 6.19 -2.91 -0.02 3.31 16 38 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 39 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 40 H 0.29 -0.04 8.06 -2.91 -0.02 -0.06 16 Total: -1.00 -72.76 348.48 4.01 -68.75 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -0.42 Total: 12.74 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 6.71 Total: 6.59 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -4.26 Total: -110.37 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.05 Total: -22.23 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -72.76 4.01 -68.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543286269.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.001 kcal (2) G-P(sol) polarization free energy of solvation -72.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds