Wall clock time and date at job start Tue Mar 31 2020 10:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35452 * 125.56272 * 2 1 4 4 C 1.39839 * 107.86476 * 180.02562 * 3 2 1 5 5 C 1.37889 * 107.08394 * 0.02562 * 4 3 2 6 6 C 1.46646 * 126.23291 * 180.02562 * 5 4 3 7 7 O 1.21713 * 120.00214 * 188.27420 * 6 5 4 8 8 N 1.34776 * 119.99963 * 8.26660 * 6 5 4 9 9 C 1.46499 * 120.00122 * 3.27086 * 8 6 5 10 10 C 1.50698 * 109.46894 * 276.19532 * 9 8 6 11 11 H 1.08001 * 120.00340 * 4.92710 * 10 9 8 12 12 C 1.37877 * 119.99832 * 184.93001 * 10 9 8 13 13 N 1.31515 * 120.00185 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00192 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46853 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47326 * 119.99796 * 14 12 10 17 17 H 1.48498 * 109.47279 * 240.00050 * 14 12 10 18 18 C 1.39954 * 120.00028 * 183.26740 * 8 6 5 19 19 C 1.38868 * 120.04651 * 353.58796 * 18 8 6 20 20 C 1.38102 * 119.95378 * 180.27607 * 19 18 8 21 21 C 1.38479 * 120.04616 * 359.51680 * 20 19 18 22 22 F 1.35099 * 119.95398 * 180.23538 * 21 20 19 23 23 C 1.38482 * 120.09508 * 0.45937 * 21 20 19 24 24 C 1.38114 * 120.04128 * 359.79477 * 23 21 20 25 25 N 1.35554 * 125.56270 * 180.33300 * 2 1 3 26 26 C 1.46495 * 125.67907 * 0.02562 * 25 2 1 27 27 H 1.09001 * 109.46810 * 89.97465 * 1 2 3 28 28 H 1.08997 * 109.47669 * 209.97512 * 1 2 3 29 29 H 1.08999 * 109.47320 * 329.97822 * 1 2 3 30 30 H 1.08000 * 126.07222 * 0.02562 * 3 2 1 31 31 H 1.07996 * 126.45557 * 180.02562 * 4 3 2 32 32 H 1.08994 * 109.47235 * 36.19551 * 9 8 6 33 33 H 1.09004 * 109.47401 * 156.19655 * 9 8 6 34 34 H 0.97005 * 120.00288 * 180.02562 * 13 12 10 35 35 H 1.08004 * 120.02581 * 359.97438 * 19 18 8 36 36 H 1.08000 * 119.98182 * 179.72296 * 20 19 18 37 37 H 1.07997 * 119.97593 * 179.77333 * 23 21 20 38 38 H 1.08000 * 120.01867 * 179.97438 * 24 23 21 39 39 H 1.09000 * 109.47167 * 264.58767 * 26 25 2 40 40 H 1.09003 * 109.47086 * 24.58767 * 26 25 2 41 41 H 1.08997 * 109.47559 * 144.58704 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6270 0.6768 -0.0006 5 6 3.6122 -0.7020 -0.0015 6 6 4.7857 -1.5815 -0.0019 7 8 4.6473 -2.7810 -0.1544 8 7 6.0176 -1.0613 0.1666 9 6 6.1789 0.3723 0.4215 10 6 6.1721 1.1190 -0.8874 11 1 5.9796 0.5908 -1.8096 12 6 6.4117 2.4767 -0.9078 13 7 6.6467 3.1199 0.2150 14 14 6.4025 3.4026 -2.5301 15 1 6.1158 2.4565 -3.6383 16 1 5.3554 4.4550 -2.4936 17 1 7.7296 4.0322 -2.7483 18 6 7.1428 -1.8908 0.0980 19 6 6.9869 -3.2665 -0.0101 20 6 8.0986 -4.0836 -0.0719 21 6 9.3679 -3.5313 -0.0361 22 9 10.4541 -4.3321 -0.1014 23 6 9.5257 -2.1597 0.0712 24 6 8.4166 -1.3393 0.1385 25 7 2.2954 -1.1027 -0.0064 26 6 1.8243 -2.4898 -0.0150 27 1 -0.3633 0.0005 -1.0277 28 1 -0.3634 -0.8901 0.5134 29 1 -0.3634 0.8898 0.5142 30 1 1.9545 2.1269 0.0004 31 1 4.5024 1.3092 -0.0004 32 1 5.3577 0.7250 1.0453 33 1 7.1251 0.5460 0.9340 34 1 6.8149 4.0751 0.2008 35 1 5.9971 -3.6975 -0.0410 36 1 7.9779 -5.1539 -0.1515 37 1 10.5166 -1.7313 0.1027 38 1 8.5401 -0.2697 0.2226 39 1 1.7988 -2.8712 1.0058 40 1 0.8227 -2.5307 -0.4432 41 1 2.5006 -3.0996 -0.6139 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554283802.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:26 Heat of formation + Delta-G solvation = 32.382596 kcal Electronic energy + Delta-G solvation = -26562.879896 eV Core-core repulsion = 22745.789653 eV Total energy + Delta-G solvation = -3817.090243 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.44184 -41.14060 -39.74421 -37.50815 -35.62909 -32.92445 -32.30992 -31.48900 -30.63957 -29.28996 -27.64259 -26.08652 -25.91049 -23.65351 -22.45239 -22.23702 -20.52701 -19.69569 -18.52286 -17.26209 -16.88234 -16.72852 -16.47401 -15.67834 -15.29427 -15.15396 -14.90701 -14.45015 -14.24689 -14.08849 -13.75081 -13.14234 -13.12298 -13.02947 -12.66955 -12.62349 -12.59171 -12.53335 -12.23064 -12.03655 -11.83782 -11.56931 -11.51627 -11.12948 -10.99991 -10.71782 -10.34229 -10.15463 -9.84823 -9.19342 -8.85608 -8.72750 -8.63780 -8.06332 -7.58671 -7.15639 -6.35508 -4.42078 1.47323 1.73283 2.15563 3.03745 3.16333 3.25546 3.26248 3.32091 3.79055 3.91264 4.20591 4.31389 4.76778 4.96926 4.99399 5.06676 5.13571 5.27117 5.31745 5.40491 5.44583 5.62059 5.74805 5.78306 5.81830 5.89359 6.02297 6.10901 6.27499 6.34324 6.57607 6.68388 6.71782 6.75884 6.86655 7.02554 7.11639 7.17304 7.47979 7.57787 7.66018 7.73224 7.75110 7.83963 7.99446 8.59988 8.73464 9.21771 10.68732 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.010057 B = 0.005808 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.555157 B = 4820.030565 C = 7189.732946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.032 3.968 3 C -0.221 4.221 4 C -0.118 4.118 5 C -0.071 4.071 6 C 0.596 3.404 7 O -0.560 6.560 8 N -0.522 5.522 9 C 0.206 3.794 10 C -0.537 4.537 11 H 0.067 0.933 12 C 0.070 3.930 13 N -0.882 5.882 14 Si 0.898 3.102 15 H -0.270 1.270 16 H -0.279 1.279 17 H -0.281 1.281 18 C 0.167 3.833 19 C -0.155 4.155 20 C -0.137 4.137 21 C 0.049 3.951 22 F -0.153 7.153 23 C -0.133 4.133 24 C -0.119 4.119 25 N -0.420 5.420 26 C 0.071 3.929 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.135 0.865 31 H 0.220 0.780 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.270 0.730 35 H 0.190 0.810 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.149 0.851 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.197 -6.503 1.223 9.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.085 4.085 3 C -0.246 4.246 4 C -0.142 4.142 5 C -0.181 4.181 6 C 0.390 3.610 7 O -0.445 6.445 8 N -0.239 5.239 9 C 0.088 3.912 10 C -0.575 4.575 11 H 0.086 0.914 12 C -0.135 4.135 13 N -0.519 5.519 14 Si 0.725 3.275 15 H -0.195 1.195 16 H -0.204 1.204 17 H -0.207 1.207 18 C 0.070 3.930 19 C -0.174 4.174 20 C -0.157 4.157 21 C 0.029 3.971 22 F -0.132 7.132 23 C -0.152 4.152 24 C -0.140 4.140 25 N -0.095 5.095 26 C -0.070 4.070 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.153 0.847 31 H 0.235 0.765 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.205 0.795 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.167 0.833 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.348 -7.252 1.241 9.718 hybrid contribution 0.307 0.550 -0.944 1.135 sum -6.042 -6.702 0.296 9.028 Atomic orbital electron populations 1.20310 0.88580 1.02819 1.02253 1.20469 0.93121 0.86376 1.08500 1.20811 0.93497 0.97193 1.13105 1.24027 1.00258 0.93292 0.96640 1.19667 0.83069 0.93883 1.21500 1.17048 0.82455 0.85886 0.75581 1.90279 1.85508 1.15468 1.53252 1.45588 1.03004 1.11450 1.63821 1.20451 1.00460 0.72239 0.98091 1.21334 1.49773 0.93172 0.93192 0.91441 1.24915 0.94219 0.97318 0.97050 1.69926 1.46070 1.09930 1.25925 0.86407 0.77949 0.79832 0.83341 1.19466 1.20434 1.20685 1.18067 0.86910 0.90027 0.98000 1.22738 1.02294 0.91830 1.00545 1.21051 0.90727 1.00451 1.03435 1.17729 0.82990 0.88498 1.07844 1.91421 1.53692 1.73609 1.94463 1.20850 0.99683 0.91342 1.03358 1.20997 0.89813 1.01344 1.01831 1.43596 1.04749 1.05738 1.55453 1.22069 1.00820 0.80792 1.03336 0.91314 0.92184 0.90211 0.84727 0.76476 0.91788 0.92964 0.92035 0.79457 0.85452 0.85076 0.83301 0.91481 0.90715 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 9.81 36.01 0.35 -0.55 16 2 C 0.03 0.51 6.87 -81.94 -0.56 -0.05 16 3 C -0.22 -4.01 10.71 -39.98 -0.43 -4.44 16 4 C -0.12 -2.47 8.07 -39.11 -0.32 -2.79 16 5 C -0.07 -1.46 6.73 -81.99 -0.55 -2.01 16 6 C 0.60 12.63 7.53 -12.87 -0.10 12.53 16 7 O -0.56 -11.63 11.16 5.18 0.06 -11.58 16 8 N -0.52 -11.13 2.70 -116.19 -0.31 -11.44 16 9 C 0.21 4.63 4.18 -5.20 -0.02 4.61 16 10 C -0.54 -12.93 6.63 -34.44 -0.23 -13.16 16 11 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 12 C 0.07 1.70 5.04 -17.82 -0.09 1.61 16 13 N -0.88 -22.12 13.29 55.43 0.74 -21.39 16 14 Si 0.90 19.57 29.54 -169.99 -5.02 14.55 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 16 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 C 0.17 3.35 6.50 -83.68 -0.54 2.80 16 19 C -0.15 -2.89 9.04 -39.40 -0.36 -3.25 16 20 C -0.14 -2.29 10.02 -39.54 -0.40 -2.69 16 21 C 0.05 0.84 7.30 -39.40 -0.29 0.55 16 22 F -0.15 -2.51 17.26 2.25 0.04 -2.47 16 23 C -0.13 -2.23 10.02 -39.54 -0.40 -2.63 16 24 C -0.12 -2.24 9.17 -39.39 -0.36 -2.60 16 25 N -0.42 -7.27 3.16 -115.63 -0.37 -7.63 16 26 C 0.07 0.97 10.21 59.84 0.61 1.59 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.57 7.54 -51.93 -0.39 0.18 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 31 H 0.22 5.03 2.77 -52.49 -0.15 4.88 16 32 H 0.06 1.49 5.12 -51.93 -0.27 1.23 16 33 H 0.05 1.21 6.14 -51.93 -0.32 0.89 16 34 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 35 H 0.19 3.63 4.52 -56.29 -0.25 3.38 16 36 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 38 H 0.15 2.89 6.20 -52.49 -0.33 2.56 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.78 7.34 -51.93 -0.38 0.40 16 41 H 0.10 1.46 6.49 -51.93 -0.34 1.13 16 LS Contribution 337.08 15.07 5.08 5.08 Total: -1.00 -26.64 337.08 -7.96 -34.60 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -4.50 Total: 10.77 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -3.67 Total: -10.48 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.06 Total: -40.46 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.06 Total: -11.58 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -26.64 -7.96 -34.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554283802.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.980 kcal (2) G-P(sol) polarization free energy of solvation -26.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds