Wall clock time and date at job start Tue Mar 31 2020 10:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35452 * 125.56272 * 2 1 4 4 C 1.39839 * 107.86476 * 180.02562 * 3 2 1 5 5 C 1.37889 * 107.08394 * 0.02562 * 4 3 2 6 6 C 1.46646 * 126.23291 * 180.02562 * 5 4 3 7 7 O 1.21713 * 120.00214 * 188.27420 * 6 5 4 8 8 N 1.34776 * 119.99963 * 8.26660 * 6 5 4 9 9 C 1.46499 * 120.00122 * 3.27086 * 8 6 5 10 10 C 1.50698 * 109.46894 * 276.19532 * 9 8 6 11 11 H 1.08001 * 120.00340 * 4.92710 * 10 9 8 12 12 C 1.37877 * 119.99832 * 184.93001 * 10 9 8 13 13 N 1.31515 * 120.00185 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00192 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46853 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47326 * 119.99796 * 14 12 10 17 17 H 1.48498 * 109.47279 * 240.00050 * 14 12 10 18 18 C 1.39954 * 120.00028 * 183.26740 * 8 6 5 19 19 C 1.38868 * 120.04651 * 353.58796 * 18 8 6 20 20 C 1.38102 * 119.95378 * 180.27607 * 19 18 8 21 21 C 1.38479 * 120.04616 * 359.51680 * 20 19 18 22 22 F 1.35099 * 119.95398 * 180.23538 * 21 20 19 23 23 C 1.38482 * 120.09508 * 0.45937 * 21 20 19 24 24 C 1.38114 * 120.04128 * 359.79477 * 23 21 20 25 25 N 1.35554 * 125.56270 * 180.33300 * 2 1 3 26 26 C 1.46495 * 125.67907 * 0.02562 * 25 2 1 27 27 H 1.09001 * 109.46810 * 89.97465 * 1 2 3 28 28 H 1.08997 * 109.47669 * 209.97512 * 1 2 3 29 29 H 1.08999 * 109.47320 * 329.97822 * 1 2 3 30 30 H 1.08000 * 126.07222 * 0.02562 * 3 2 1 31 31 H 1.07996 * 126.45557 * 180.02562 * 4 3 2 32 32 H 1.08994 * 109.47235 * 36.19551 * 9 8 6 33 33 H 1.09004 * 109.47401 * 156.19655 * 9 8 6 34 34 H 0.97005 * 120.00288 * 180.02562 * 13 12 10 35 35 H 1.08004 * 120.02581 * 359.97438 * 19 18 8 36 36 H 1.08000 * 119.98182 * 179.72296 * 20 19 18 37 37 H 1.07997 * 119.97593 * 179.77333 * 23 21 20 38 38 H 1.08000 * 120.01867 * 179.97438 * 24 23 21 39 39 H 1.09000 * 109.47167 * 264.58767 * 26 25 2 40 40 H 1.09003 * 109.47086 * 24.58767 * 26 25 2 41 41 H 1.08997 * 109.47559 * 144.58704 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6270 0.6768 -0.0006 5 6 3.6122 -0.7020 -0.0015 6 6 4.7857 -1.5815 -0.0019 7 8 4.6473 -2.7810 -0.1544 8 7 6.0176 -1.0613 0.1666 9 6 6.1789 0.3723 0.4215 10 6 6.1721 1.1190 -0.8874 11 1 5.9796 0.5908 -1.8096 12 6 6.4117 2.4767 -0.9078 13 7 6.6467 3.1199 0.2150 14 14 6.4025 3.4026 -2.5301 15 1 6.1158 2.4565 -3.6383 16 1 5.3554 4.4550 -2.4936 17 1 7.7296 4.0322 -2.7483 18 6 7.1428 -1.8908 0.0980 19 6 6.9869 -3.2665 -0.0101 20 6 8.0986 -4.0836 -0.0719 21 6 9.3679 -3.5313 -0.0361 22 9 10.4541 -4.3321 -0.1014 23 6 9.5257 -2.1597 0.0712 24 6 8.4166 -1.3393 0.1385 25 7 2.2954 -1.1027 -0.0064 26 6 1.8243 -2.4898 -0.0150 27 1 -0.3633 0.0005 -1.0277 28 1 -0.3634 -0.8901 0.5134 29 1 -0.3634 0.8898 0.5142 30 1 1.9545 2.1269 0.0004 31 1 4.5024 1.3092 -0.0004 32 1 5.3577 0.7250 1.0453 33 1 7.1251 0.5460 0.9340 34 1 6.8149 4.0751 0.2008 35 1 5.9971 -3.6975 -0.0410 36 1 7.9779 -5.1539 -0.1515 37 1 10.5166 -1.7313 0.1027 38 1 8.5401 -0.2697 0.2226 39 1 1.7988 -2.8712 1.0058 40 1 0.8227 -2.5307 -0.4432 41 1 2.5006 -3.0996 -0.6139 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554283802.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:25 Heat of formation + Delta-G solvation = 20.486609 kcal Electronic energy + Delta-G solvation = -26563.395745 eV Core-core repulsion = 22745.789653 eV Total energy + Delta-G solvation = -3817.606092 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.78874 -42.58751 -41.21519 -38.99093 -37.27352 -34.72583 -33.64614 -32.70834 -32.05883 -30.72529 -29.36550 -27.38810 -27.15881 -25.40397 -23.93653 -23.68612 -22.01724 -21.11301 -19.89295 -18.75104 -18.68035 -18.26998 -17.96731 -17.06567 -16.72697 -16.53618 -16.48581 -15.97014 -15.74934 -15.55076 -15.13153 -14.59320 -14.56030 -14.36215 -14.03108 -13.92628 -13.89511 -13.76153 -13.69275 -13.52502 -13.06981 -12.90136 -12.77294 -12.73314 -12.66799 -12.24541 -12.06023 -11.92170 -11.48692 -10.85849 -10.66598 -10.34914 -10.04979 -9.47143 -9.03765 -8.67257 -8.22744 -6.35126 0.00434 0.31429 0.71027 1.40345 1.45126 1.53785 1.65214 1.85078 2.31964 2.38378 2.44314 2.79418 3.06773 3.36443 3.54944 3.92539 3.97396 4.01830 4.05242 4.31185 4.36508 4.40168 4.41791 4.49545 4.67950 4.75792 4.83619 4.85879 4.96830 5.05286 5.06972 5.12546 5.24259 5.26597 5.33139 5.49180 5.59643 5.62429 5.69962 5.91151 6.06817 6.15472 6.22462 6.32279 6.51038 6.70662 7.10232 7.30595 8.80112 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.010057 B = 0.005808 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.555157 B = 4820.030565 C = 7189.732946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.056 3.944 3 C -0.248 4.248 4 C -0.142 4.142 5 C -0.102 4.102 6 C 0.586 3.414 7 O -0.564 6.564 8 N -0.529 5.529 9 C 0.225 3.775 10 C -0.532 4.532 11 H 0.046 0.954 12 C 0.038 3.962 13 N -0.905 5.905 14 Si 0.948 3.052 15 H -0.279 1.279 16 H -0.272 1.272 17 H -0.276 1.276 18 C 0.140 3.860 19 C -0.162 4.162 20 C -0.127 4.127 21 C 0.052 3.948 22 F -0.146 7.146 23 C -0.124 4.124 24 C -0.130 4.130 25 N -0.420 5.420 26 C 0.067 3.933 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.148 0.852 31 H 0.193 0.807 32 H 0.053 0.947 33 H 0.040 0.960 34 H 0.273 0.727 35 H 0.183 0.817 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.136 0.864 39 H 0.078 0.922 40 H 0.114 0.886 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.541 -7.512 0.802 10.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.062 4.062 3 C -0.272 4.272 4 C -0.167 4.167 5 C -0.212 4.212 6 C 0.382 3.618 7 O -0.449 6.449 8 N -0.247 5.247 9 C 0.105 3.895 10 C -0.570 4.570 11 H 0.065 0.935 12 C -0.165 4.165 13 N -0.543 5.543 14 Si 0.774 3.226 15 H -0.204 1.204 16 H -0.197 1.197 17 H -0.202 1.202 18 C 0.044 3.956 19 C -0.181 4.181 20 C -0.146 4.146 21 C 0.032 3.968 22 F -0.124 7.124 23 C -0.144 4.144 24 C -0.151 4.151 25 N -0.095 5.095 26 C -0.073 4.073 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.165 0.835 31 H 0.210 0.790 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.199 0.801 36 H 0.174 0.826 37 H 0.175 0.825 38 H 0.154 0.846 39 H 0.096 0.904 40 H 0.133 0.867 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.682 -8.286 0.822 11.329 hybrid contribution 0.698 0.787 -0.796 1.319 sum -6.984 -7.500 0.025 10.248 Atomic orbital electron populations 1.20518 0.84304 1.04874 1.04056 1.21235 0.95416 0.85064 1.04478 1.21029 0.92689 0.98804 1.14700 1.23800 1.01005 0.93728 0.98137 1.19626 0.84375 0.93707 1.23539 1.17283 0.82709 0.86200 0.75633 1.90262 1.85654 1.15339 1.53665 1.45548 1.03735 1.10993 1.64376 1.20089 0.99150 0.73145 0.97085 1.21233 1.49510 0.93419 0.92845 0.93530 1.25416 0.94020 0.97762 0.99266 1.69983 1.46898 1.10216 1.27164 0.85643 0.78125 0.78687 0.80174 1.20355 1.19715 1.20200 1.18392 0.86989 0.90728 0.99483 1.22666 1.02791 0.91332 1.01302 1.21287 0.89953 1.01682 1.01707 1.17757 0.83242 0.88524 1.07237 1.91445 1.53310 1.73350 1.94344 1.21063 1.00133 0.91346 1.01817 1.20940 0.90147 1.01014 1.02953 1.43894 1.03735 1.07501 1.54417 1.22294 1.02281 0.78578 1.04136 0.89404 0.89858 0.88496 0.83460 0.79031 0.92915 0.94156 0.91784 0.80117 0.82577 0.82544 0.84615 0.90358 0.86734 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 9.81 71.24 0.70 -0.73 16 2 C 0.06 1.70 6.87 41.34 0.28 1.98 16 3 C -0.25 -8.98 10.71 22.01 0.24 -8.75 16 4 C -0.14 -6.17 8.07 22.57 0.18 -5.99 16 5 C -0.10 -4.30 6.73 40.34 0.27 -4.03 16 6 C 0.59 25.83 7.53 86.44 0.65 26.48 16 7 O -0.56 -23.98 11.16 -4.39 -0.05 -24.03 16 8 N -0.53 -23.72 2.70 -639.71 -1.73 -25.45 16 9 C 0.22 10.71 4.18 85.63 0.36 11.07 16 10 C -0.53 -26.88 6.63 25.60 0.17 -26.71 16 11 H 0.05 2.51 7.81 -2.91 -0.02 2.49 16 12 C 0.04 1.90 5.04 84.65 0.43 2.32 16 13 N -0.90 -46.73 13.29 21.45 0.28 -46.45 16 14 Si 0.95 40.87 29.54 68.60 2.03 42.89 16 15 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 16 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 17 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 18 C 0.14 5.80 6.50 38.15 0.25 6.04 16 19 C -0.16 -6.06 9.04 22.39 0.20 -5.85 16 20 C -0.13 -4.05 10.02 22.29 0.22 -3.83 16 21 C 0.05 1.68 7.30 22.39 0.16 1.84 16 22 F -0.15 -4.41 17.26 44.97 0.78 -3.63 16 23 C -0.12 -4.05 10.02 22.30 0.22 -3.83 16 24 C -0.13 -4.99 9.17 22.39 0.21 -4.79 16 25 N -0.42 -14.15 3.16 -519.73 -1.64 -15.79 16 26 C 0.07 1.70 10.21 127.77 1.30 3.00 16 27 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.08 1.15 7.54 -2.39 -0.02 1.13 16 29 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.15 4.75 8.06 -2.91 -0.02 4.72 16 31 H 0.19 9.39 2.77 -2.91 -0.01 9.38 16 32 H 0.05 2.64 5.12 -2.39 -0.01 2.63 16 33 H 0.04 1.99 6.14 -2.38 -0.01 1.97 16 34 H 0.27 13.32 8.31 -92.70 -0.77 12.55 16 35 H 0.18 7.08 4.52 -63.12 -0.29 6.80 16 36 H 0.16 4.02 8.06 -2.91 -0.02 3.99 16 37 H 0.16 4.22 8.06 -2.91 -0.02 4.20 16 38 H 0.14 5.53 6.20 -2.91 -0.02 5.51 16 39 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.11 1.95 7.34 -2.39 -0.02 1.93 16 41 H 0.08 2.36 6.49 -2.39 -0.02 2.34 16 Total: -1.00 -59.52 337.08 6.32 -53.20 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: 0.81 Total: 31.01 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 5.85 Total: -11.77 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -3.09 Total: -87.68 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.05 Total: -24.03 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.78 Total: -3.63 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.89 kcal Total: -59.52 6.32 -53.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554283802.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.685 kcal (2) G-P(sol) polarization free energy of solvation -59.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds