Wall clock time and date at job start Tue Mar 31 2020 11:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47428 * 2 1 4 4 N 1.34669 * 125.80474 * 265.01907 * 3 2 1 5 5 H 0.96999 * 124.84881 * 359.97438 * 4 3 2 6 6 C 1.36442 * 110.29847 * 179.97438 * 4 3 2 7 7 C 1.34485 * 108.85988 * 0.02562 * 6 4 3 8 8 C 1.36782 * 125.80424 * 84.71620 * 3 2 1 9 9 C 1.47243 * 126.94322 * 0.02562 * 8 3 2 10 10 O 1.21642 * 119.99618 * 349.84055 * 9 8 3 11 11 N 1.34778 * 120.00166 * 169.84173 * 9 8 3 12 12 C 1.46498 * 119.99749 * 2.54034 * 11 9 8 13 13 C 1.50695 * 109.47234 * 82.25500 * 12 11 9 14 14 H 1.08001 * 120.00158 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00218 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99922 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00308 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47362 * 90.00260 * 17 15 13 19 19 H 1.48498 * 109.47233 * 210.00508 * 17 15 13 20 20 H 1.48505 * 109.46993 * 330.00278 * 17 15 13 21 21 C 1.39973 * 119.99797 * 182.53904 * 11 9 8 22 22 C 1.38867 * 120.04550 * 187.59463 * 21 11 9 23 23 C 1.38113 * 119.95335 * 179.81525 * 22 21 11 24 24 C 1.38466 * 120.04626 * 0.44136 * 23 22 21 25 25 F 1.35099 * 119.95427 * 179.76632 * 24 23 22 26 26 C 1.38479 * 120.09324 * 359.79312 * 24 23 22 27 27 C 1.38105 * 120.04783 * 359.97438 * 26 24 23 28 28 H 1.09005 * 109.46851 * 300.00492 * 1 2 3 29 29 H 1.09001 * 109.47085 * 59.99658 * 1 2 3 30 30 H 1.08992 * 109.47410 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46826 * 119.99858 * 2 1 3 32 32 H 1.09005 * 109.47325 * 239.99748 * 2 1 3 33 33 H 1.08008 * 125.57123 * 179.97438 * 6 4 3 34 34 H 1.08007 * 126.82826 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.46958 * 202.25714 * 12 11 9 36 36 H 1.09004 * 109.47295 * 322.25219 * 12 11 9 37 37 H 0.97001 * 120.00674 * 179.97438 * 16 15 13 38 38 H 1.08006 * 120.02087 * 0.02562 * 22 21 11 39 39 H 1.07998 * 119.97493 * 180.18734 * 23 22 21 40 40 H 1.08000 * 119.97549 * 179.97438 * 26 24 23 41 41 H 1.07994 * 120.02598 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3844 2.1319 -1.0881 5 1 2.3526 1.8024 -1.9998 6 6 2.7924 3.3822 -0.7247 7 6 2.7089 3.4952 0.6128 8 6 2.2028 2.2092 1.1046 9 6 1.9357 1.8405 2.5049 10 8 1.3476 0.8067 2.7599 11 7 2.3426 2.6485 3.5039 12 6 3.0012 3.9202 3.1953 13 6 1.9587 4.9647 2.8903 14 1 0.9103 4.7072 2.9234 15 6 2.3431 6.2495 2.5699 16 7 3.6197 6.5632 2.5301 17 14 1.0509 7.5445 2.1925 18 1 0.6645 8.2387 3.4471 19 1 1.6051 8.5314 1.2312 20 1 -0.1443 6.8929 1.5990 21 6 2.1359 2.2725 4.8363 22 6 2.4089 3.1681 5.8618 23 6 2.2007 2.7964 7.1756 24 6 1.7286 1.5287 7.4710 25 9 1.5300 1.1655 8.7570 26 6 1.4602 0.6324 6.4500 27 6 1.6626 1.0016 5.1347 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 3.1283 4.1547 -1.4007 34 1 2.9605 4.3618 1.2063 35 1 3.5952 4.2389 4.0519 36 1 3.6513 3.7921 2.3298 37 1 3.8903 7.4670 2.3043 38 1 2.7807 4.1558 5.6320 39 1 2.4101 3.4937 7.9733 40 1 1.0925 -0.3561 6.6826 41 1 1.4536 0.3022 4.3389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556836776.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:45 Heat of formation + Delta-G solvation = 18.462612 kcal Electronic energy + Delta-G solvation = -26643.176985 eV Core-core repulsion = 22825.483127 eV Total energy + Delta-G solvation = -3817.693859 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.37515 -40.93447 -39.65385 -37.41090 -35.38514 -33.24443 -32.81721 -30.89643 -30.53453 -28.67599 -27.99714 -27.09129 -23.80666 -23.40122 -22.55197 -22.15105 -20.65544 -20.10229 -18.08835 -17.22705 -17.16304 -16.73521 -16.38951 -15.94447 -15.10717 -14.85085 -14.61734 -14.39348 -14.17991 -14.01854 -13.81278 -13.39688 -13.24115 -12.98586 -12.83185 -12.54869 -12.46304 -12.13289 -11.99667 -11.86634 -11.67340 -11.17576 -11.09058 -10.99490 -10.69227 -10.61714 -10.29451 -10.05852 -9.93717 -9.09563 -8.78260 -8.65442 -8.54796 -8.13746 -7.68033 -7.06295 -6.28817 -4.34933 1.60965 1.80752 2.34407 3.13020 3.19622 3.26419 3.31422 3.53347 3.86301 4.01320 4.25592 4.44615 4.84300 5.03429 5.03976 5.20362 5.25003 5.33858 5.53572 5.57155 5.74300 5.77966 5.87594 5.88540 5.97819 6.12499 6.16759 6.25479 6.41752 6.49365 6.64740 6.66715 6.78124 6.81013 6.89013 7.00957 7.14028 7.25644 7.45664 7.65040 7.69912 7.79094 7.90834 7.94320 8.16557 8.70538 8.94202 9.29340 10.75368 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.009295 B = 0.006258 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.519497 B = 4472.903591 C = 6875.951276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.053 4.053 3 C 0.092 3.908 4 N -0.556 5.556 5 H 0.406 0.594 6 C -0.057 4.057 7 C -0.141 4.141 8 C -0.226 4.226 9 C 0.597 3.403 10 O -0.554 6.554 11 N -0.530 5.530 12 C 0.208 3.792 13 C -0.529 4.529 14 H 0.064 0.936 15 C 0.067 3.933 16 N -0.889 5.889 17 Si 0.895 3.105 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.169 3.831 22 C -0.125 4.125 23 C -0.132 4.132 24 C 0.045 3.955 25 F -0.154 7.154 26 C -0.136 4.136 27 C -0.152 4.152 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.161 0.839 34 H 0.210 0.790 35 H 0.045 0.955 36 H 0.069 0.931 37 H 0.268 0.732 38 H 0.147 0.853 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.770 -8.443 -4.029 9.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.092 4.092 3 C -0.027 4.027 4 N -0.152 5.152 5 H 0.241 0.759 6 C -0.182 4.182 7 C -0.163 4.163 8 C -0.237 4.237 9 C 0.391 3.609 10 O -0.437 6.437 11 N -0.247 5.247 12 C 0.090 3.910 13 C -0.567 4.567 14 H 0.082 0.918 15 C -0.137 4.137 16 N -0.527 5.527 17 Si 0.722 3.278 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.196 1.196 21 C 0.072 3.928 22 C -0.146 4.146 23 C -0.152 4.152 24 C 0.025 3.975 25 F -0.133 7.133 26 C -0.156 4.156 27 C -0.172 4.172 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.179 0.821 34 H 0.227 0.773 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.165 0.835 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -0.893 -8.750 -4.132 9.718 hybrid contribution -0.680 1.018 -0.378 1.281 sum -1.573 -7.733 -4.509 9.088 Atomic orbital electron populations 1.21655 0.94352 1.01388 1.02371 1.20144 0.96516 0.89568 1.02934 1.20156 1.01795 0.94520 0.86179 1.41538 1.53258 1.12407 1.07952 0.75888 1.21881 1.11305 0.87693 0.97282 1.24188 0.99620 0.99026 0.93440 1.19915 1.15814 0.96793 0.91176 1.17489 0.76983 0.81828 0.84555 1.90307 1.43437 1.26410 1.83572 1.45805 1.54643 1.21809 1.02449 1.20395 0.93682 0.77822 0.99138 1.21361 0.93611 0.94104 1.47635 0.91763 1.24884 0.95571 0.98132 0.95068 1.69918 1.14406 1.20681 1.47658 0.86511 0.81724 0.81109 0.78437 1.20413 1.20948 1.19636 1.18132 0.96949 0.93237 0.84490 1.20985 1.02541 1.00500 0.90564 1.20826 1.02177 0.94953 0.97219 1.17697 1.06472 0.95211 0.78138 1.91414 1.93548 1.92265 1.36092 1.21038 1.02954 0.99392 0.92182 1.22568 1.00244 0.96880 0.97475 0.91158 0.93692 0.92616 0.88628 0.92224 0.82133 0.77334 0.93747 0.91377 0.92199 0.83536 0.85268 0.85540 0.79757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.83 37.16 0.37 -1.47 16 2 C -0.05 -0.72 5.71 -27.89 -0.16 -0.88 16 3 C 0.09 1.49 6.43 -81.88 -0.53 0.96 16 4 N -0.56 -7.71 5.90 -9.10 -0.05 -7.76 16 5 H 0.41 3.99 8.96 -40.82 -0.37 3.63 16 6 C -0.06 -0.92 11.89 -16.83 -0.20 -1.12 16 7 C -0.14 -2.81 8.21 -37.50 -0.31 -3.12 16 8 C -0.23 -4.47 6.07 -103.36 -0.63 -5.10 16 9 C 0.60 12.59 7.51 -12.60 -0.09 12.50 16 10 O -0.55 -11.44 10.84 5.24 0.06 -11.38 16 11 N -0.53 -11.42 2.71 -115.98 -0.31 -11.74 16 12 C 0.21 4.74 4.19 -5.20 -0.02 4.72 16 13 C -0.53 -12.93 7.14 -34.44 -0.25 -13.18 16 14 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 15 C 0.07 1.64 4.77 -17.82 -0.09 1.55 16 16 N -0.89 -22.38 13.21 55.43 0.73 -21.65 16 17 Si 0.89 19.73 29.54 -169.99 -5.02 14.71 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 C 0.17 3.45 6.49 -83.68 -0.54 2.91 16 22 C -0.13 -2.40 9.16 -39.39 -0.36 -2.76 16 23 C -0.13 -2.27 10.02 -39.54 -0.40 -2.67 16 24 C 0.04 0.77 7.30 -39.41 -0.29 0.49 16 25 F -0.15 -2.58 17.26 2.25 0.04 -2.54 16 26 C -0.14 -2.31 10.02 -39.54 -0.40 -2.71 16 27 C -0.15 -2.87 8.99 -39.40 -0.35 -3.23 16 28 H 0.07 1.12 7.45 -51.93 -0.39 0.73 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.10 1.41 7.03 -51.93 -0.36 1.05 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.16 2.17 8.06 -52.48 -0.42 1.75 16 34 H 0.21 4.73 3.08 -52.48 -0.16 4.56 16 35 H 0.04 1.04 6.12 -51.93 -0.32 0.73 16 36 H 0.07 1.60 4.70 -51.93 -0.24 1.35 16 37 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 38 H 0.15 2.90 6.20 -52.48 -0.33 2.57 16 39 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 40 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.19 3.58 4.65 -55.64 -0.26 3.32 16 LS Contribution 337.43 15.07 5.09 5.09 Total: -1.00 -26.88 337.43 -8.22 -35.10 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -4.51 Total: 13.27 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -4.24 Total: -13.10 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.36 Total: -41.15 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.06 Total: -11.38 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -26.88 -8.22 -35.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556836776.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.564 kcal (2) G-P(sol) polarization free energy of solvation -26.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds