Wall clock time and date at job start Tue Mar 31 2020 11:11:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.50698 * 109.47428 * 2 1
4 4 N 1.34669 * 125.80474 * 265.01907 * 3 2 1
5 5 H 0.96999 * 124.84881 * 359.97438 * 4 3 2
6 6 C 1.36442 * 110.29847 * 179.97438 * 4 3 2
7 7 C 1.34485 * 108.85988 * 0.02562 * 6 4 3
8 8 C 1.36782 * 125.80424 * 84.71620 * 3 2 1
9 9 C 1.47243 * 126.94322 * 0.02562 * 8 3 2
10 10 O 1.21642 * 119.99618 * 349.84055 * 9 8 3
11 11 N 1.34778 * 120.00166 * 169.84173 * 9 8 3
12 12 C 1.46498 * 119.99749 * 2.54034 * 11 9 8
13 13 C 1.50695 * 109.47234 * 82.25500 * 12 11 9
14 14 H 1.08001 * 120.00158 * 0.02562 * 13 12 11
15 15 C 1.37878 * 120.00218 * 179.97438 * 13 12 11
16 16 N 1.31514 * 119.99922 * 0.02562 * 15 13 12
17 17 Si 1.86796 * 120.00308 * 180.02562 * 15 13 12
18 18 H 1.48498 * 109.47362 * 90.00260 * 17 15 13
19 19 H 1.48498 * 109.47233 * 210.00508 * 17 15 13
20 20 H 1.48505 * 109.46993 * 330.00278 * 17 15 13
21 21 C 1.39973 * 119.99797 * 182.53904 * 11 9 8
22 22 C 1.38867 * 120.04550 * 187.59463 * 21 11 9
23 23 C 1.38113 * 119.95335 * 179.81525 * 22 21 11
24 24 C 1.38466 * 120.04626 * 0.44136 * 23 22 21
25 25 F 1.35099 * 119.95427 * 179.76632 * 24 23 22
26 26 C 1.38479 * 120.09324 * 359.79312 * 24 23 22
27 27 C 1.38105 * 120.04783 * 359.97438 * 26 24 23
28 28 H 1.09005 * 109.46851 * 300.00492 * 1 2 3
29 29 H 1.09001 * 109.47085 * 59.99658 * 1 2 3
30 30 H 1.08992 * 109.47410 * 180.02562 * 1 2 3
31 31 H 1.09001 * 109.46826 * 119.99858 * 2 1 3
32 32 H 1.09005 * 109.47325 * 239.99748 * 2 1 3
33 33 H 1.08008 * 125.57123 * 179.97438 * 6 4 3
34 34 H 1.08007 * 126.82826 * 179.97438 * 7 6 4
35 35 H 1.09000 * 109.46958 * 202.25714 * 12 11 9
36 36 H 1.09004 * 109.47295 * 322.25219 * 12 11 9
37 37 H 0.97001 * 120.00674 * 179.97438 * 16 15 13
38 38 H 1.08006 * 120.02087 * 0.02562 * 22 21 11
39 39 H 1.07998 * 119.97493 * 180.18734 * 23 22 21
40 40 H 1.08000 * 119.97549 * 179.97438 * 26 24 23
41 41 H 1.07994 * 120.02598 * 179.97438 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 7 2.3844 2.1319 -1.0881
5 1 2.3526 1.8024 -1.9998
6 6 2.7924 3.3822 -0.7247
7 6 2.7089 3.4952 0.6128
8 6 2.2028 2.2092 1.1046
9 6 1.9357 1.8405 2.5049
10 8 1.3476 0.8067 2.7599
11 7 2.3426 2.6485 3.5039
12 6 3.0012 3.9202 3.1953
13 6 1.9587 4.9647 2.8903
14 1 0.9103 4.7072 2.9234
15 6 2.3431 6.2495 2.5699
16 7 3.6197 6.5632 2.5301
17 14 1.0509 7.5445 2.1925
18 1 0.6645 8.2387 3.4471
19 1 1.6051 8.5314 1.2312
20 1 -0.1443 6.8929 1.5990
21 6 2.1359 2.2725 4.8363
22 6 2.4089 3.1681 5.8618
23 6 2.2007 2.7964 7.1756
24 6 1.7286 1.5287 7.4710
25 9 1.5300 1.1655 8.7570
26 6 1.4602 0.6324 6.4500
27 6 1.6626 1.0016 5.1347
28 1 -0.3633 0.5139 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3634 -1.0276 0.0005
31 1 1.8933 -0.5138 0.8900
32 1 1.8934 -0.5139 -0.8900
33 1 3.1283 4.1547 -1.4007
34 1 2.9605 4.3618 1.2063
35 1 3.5952 4.2389 4.0519
36 1 3.6513 3.7921 2.3298
37 1 3.8903 7.4670 2.3043
38 1 2.7807 4.1558 5.6320
39 1 2.4101 3.4937 7.9733
40 1 1.0925 -0.3561 6.6826
41 1 1.4536 0.3022 4.3389
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000556836776.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:11:45
Heat of formation + Delta-G solvation = 18.462612 kcal
Electronic energy + Delta-G solvation = -26643.176985 eV
Core-core repulsion = 22825.483127 eV
Total energy + Delta-G solvation = -3817.693859 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.133 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-48.37515 -40.93447 -39.65385 -37.41090 -35.38514 -33.24443 -32.81721 -30.89643
-30.53453 -28.67599 -27.99714 -27.09129 -23.80666 -23.40122 -22.55197 -22.15105
-20.65544 -20.10229 -18.08835 -17.22705 -17.16304 -16.73521 -16.38951 -15.94447
-15.10717 -14.85085 -14.61734 -14.39348 -14.17991 -14.01854 -13.81278 -13.39688
-13.24115 -12.98586 -12.83185 -12.54869 -12.46304 -12.13289 -11.99667 -11.86634
-11.67340 -11.17576 -11.09058 -10.99490 -10.69227 -10.61714 -10.29451 -10.05852
-9.93717 -9.09563 -8.78260 -8.65442 -8.54796 -8.13746 -7.68033 -7.06295
-6.28817 -4.34933 1.60965 1.80752 2.34407 3.13020 3.19622 3.26419
3.31422 3.53347 3.86301 4.01320 4.25592 4.44615 4.84300 5.03429
5.03976 5.20362 5.25003 5.33858 5.53572 5.57155 5.74300 5.77966
5.87594 5.88540 5.97819 6.12499 6.16759 6.25479 6.41752 6.49365
6.64740 6.66715 6.78124 6.81013 6.89013 7.00957 7.14028 7.25644
7.45664 7.65040 7.69912 7.79094 7.90834 7.94320 8.16557 8.70538
8.94202 9.29340 10.75368
Molecular weight = 316.13amu
Principal moments of inertia in cm(-1)
A = 0.009295 B = 0.006258 C = 0.004071
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3011.519497 B = 4472.903591 C = 6875.951276
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.053 4.053
3 C 0.092 3.908
4 N -0.556 5.556
5 H 0.406 0.594
6 C -0.057 4.057
7 C -0.141 4.141
8 C -0.226 4.226
9 C 0.597 3.403
10 O -0.554 6.554
11 N -0.530 5.530
12 C 0.208 3.792
13 C -0.529 4.529
14 H 0.064 0.936
15 C 0.067 3.933
16 N -0.889 5.889
17 Si 0.895 3.105
18 H -0.278 1.278
19 H -0.284 1.284
20 H -0.272 1.272
21 C 0.169 3.831
22 C -0.125 4.125
23 C -0.132 4.132
24 C 0.045 3.955
25 F -0.154 7.154
26 C -0.136 4.136
27 C -0.152 4.152
28 H 0.069 0.931
29 H 0.044 0.956
30 H 0.055 0.945
31 H 0.095 0.905
32 H 0.059 0.941
33 H 0.161 0.839
34 H 0.210 0.790
35 H 0.045 0.955
36 H 0.069 0.931
37 H 0.268 0.732
38 H 0.147 0.853
39 H 0.129 0.871
40 H 0.127 0.873
41 H 0.186 0.814
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.770 -8.443 -4.029 9.386
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.092 4.092
3 C -0.027 4.027
4 N -0.152 5.152
5 H 0.241 0.759
6 C -0.182 4.182
7 C -0.163 4.163
8 C -0.237 4.237
9 C 0.391 3.609
10 O -0.437 6.437
11 N -0.247 5.247
12 C 0.090 3.910
13 C -0.567 4.567
14 H 0.082 0.918
15 C -0.137 4.137
16 N -0.527 5.527
17 Si 0.722 3.278
18 H -0.204 1.204
19 H -0.209 1.209
20 H -0.196 1.196
21 C 0.072 3.928
22 C -0.146 4.146
23 C -0.152 4.152
24 C 0.025 3.975
25 F -0.133 7.133
26 C -0.156 4.156
27 C -0.172 4.172
28 H 0.088 0.912
29 H 0.063 0.937
30 H 0.074 0.926
31 H 0.114 0.886
32 H 0.078 0.922
33 H 0.179 0.821
34 H 0.227 0.773
35 H 0.063 0.937
36 H 0.086 0.914
37 H 0.078 0.922
38 H 0.165 0.835
39 H 0.147 0.853
40 H 0.145 0.855
41 H 0.202 0.798
Dipole moment (debyes) X Y Z Total
from point charges -0.893 -8.750 -4.132 9.718
hybrid contribution -0.680 1.018 -0.378 1.281
sum -1.573 -7.733 -4.509 9.088
Atomic orbital electron populations
1.21655 0.94352 1.01388 1.02371 1.20144 0.96516 0.89568 1.02934
1.20156 1.01795 0.94520 0.86179 1.41538 1.53258 1.12407 1.07952
0.75888 1.21881 1.11305 0.87693 0.97282 1.24188 0.99620 0.99026
0.93440 1.19915 1.15814 0.96793 0.91176 1.17489 0.76983 0.81828
0.84555 1.90307 1.43437 1.26410 1.83572 1.45805 1.54643 1.21809
1.02449 1.20395 0.93682 0.77822 0.99138 1.21361 0.93611 0.94104
1.47635 0.91763 1.24884 0.95571 0.98132 0.95068 1.69918 1.14406
1.20681 1.47658 0.86511 0.81724 0.81109 0.78437 1.20413 1.20948
1.19636 1.18132 0.96949 0.93237 0.84490 1.20985 1.02541 1.00500
0.90564 1.20826 1.02177 0.94953 0.97219 1.17697 1.06472 0.95211
0.78138 1.91414 1.93548 1.92265 1.36092 1.21038 1.02954 0.99392
0.92182 1.22568 1.00244 0.96880 0.97475 0.91158 0.93692 0.92616
0.88628 0.92224 0.82133 0.77334 0.93747 0.91377 0.92199 0.83536
0.85268 0.85540 0.79757
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.83 9.83 37.16 0.37 -1.47 16
2 C -0.05 -0.72 5.71 -27.89 -0.16 -0.88 16
3 C 0.09 1.49 6.43 -81.88 -0.53 0.96 16
4 N -0.56 -7.71 5.90 -9.10 -0.05 -7.76 16
5 H 0.41 3.99 8.96 -40.82 -0.37 3.63 16
6 C -0.06 -0.92 11.89 -16.83 -0.20 -1.12 16
7 C -0.14 -2.81 8.21 -37.50 -0.31 -3.12 16
8 C -0.23 -4.47 6.07 -103.36 -0.63 -5.10 16
9 C 0.60 12.59 7.51 -12.60 -0.09 12.50 16
10 O -0.55 -11.44 10.84 5.24 0.06 -11.38 16
11 N -0.53 -11.42 2.71 -115.98 -0.31 -11.74 16
12 C 0.21 4.74 4.19 -5.20 -0.02 4.72 16
13 C -0.53 -12.93 7.14 -34.44 -0.25 -13.18 16
14 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16
15 C 0.07 1.64 4.77 -17.82 -0.09 1.55 16
16 N -0.89 -22.38 13.21 55.43 0.73 -21.65 16
17 Si 0.89 19.73 29.54 -169.99 -5.02 14.71 16
18 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16
19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16
20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16
21 C 0.17 3.45 6.49 -83.68 -0.54 2.91 16
22 C -0.13 -2.40 9.16 -39.39 -0.36 -2.76 16
23 C -0.13 -2.27 10.02 -39.54 -0.40 -2.67 16
24 C 0.04 0.77 7.30 -39.41 -0.29 0.49 16
25 F -0.15 -2.58 17.26 2.25 0.04 -2.54 16
26 C -0.14 -2.31 10.02 -39.54 -0.40 -2.71 16
27 C -0.15 -2.87 8.99 -39.40 -0.35 -3.23 16
28 H 0.07 1.12 7.45 -51.93 -0.39 0.73 16
29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16
30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16
31 H 0.10 1.41 7.03 -51.93 -0.36 1.05 16
32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
33 H 0.16 2.17 8.06 -52.48 -0.42 1.75 16
34 H 0.21 4.73 3.08 -52.48 -0.16 4.56 16
35 H 0.04 1.04 6.12 -51.93 -0.32 0.73 16
36 H 0.07 1.60 4.70 -51.93 -0.24 1.35 16
37 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16
38 H 0.15 2.90 6.20 -52.48 -0.33 2.57 16
39 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16
40 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16
41 H 0.19 3.58 4.65 -55.64 -0.26 3.32 16
LS Contribution 337.43 15.07 5.09 5.09
Total: -1.00 -26.88 337.43 -8.22 -35.10
By element:
Atomic # 1 Polarization: 17.78 SS G_CDS: -4.51 Total: 13.27 kcal
Atomic # 6 Polarization: -8.86 SS G_CDS: -4.24 Total: -13.10 kcal
Atomic # 7 Polarization: -41.51 SS G_CDS: 0.36 Total: -41.15 kcal
Atomic # 8 Polarization: -11.44 SS G_CDS: 0.06 Total: -11.38 kcal
Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal
Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal
Total LS contribution 5.09 Total: 5.09 kcal
Total: -26.88 -8.22 -35.10 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000556836776.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.564 kcal
(2) G-P(sol) polarization free energy of solvation -26.878 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.686 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.101 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.463 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds