Wall clock time and date at job start Tue Mar 31 2020 11:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47428 * 2 1 4 4 N 1.34669 * 125.80474 * 265.01907 * 3 2 1 5 5 H 0.96999 * 124.84881 * 359.97438 * 4 3 2 6 6 C 1.36442 * 110.29847 * 179.97438 * 4 3 2 7 7 C 1.34485 * 108.85988 * 0.02562 * 6 4 3 8 8 C 1.36782 * 125.80424 * 84.71620 * 3 2 1 9 9 C 1.47243 * 126.94322 * 0.02562 * 8 3 2 10 10 O 1.21642 * 119.99618 * 349.84055 * 9 8 3 11 11 N 1.34778 * 120.00166 * 169.84173 * 9 8 3 12 12 C 1.46498 * 119.99749 * 2.54034 * 11 9 8 13 13 C 1.50695 * 109.47234 * 82.25500 * 12 11 9 14 14 H 1.08001 * 120.00158 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00218 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99922 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00308 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47362 * 90.00260 * 17 15 13 19 19 H 1.48498 * 109.47233 * 210.00508 * 17 15 13 20 20 H 1.48505 * 109.46993 * 330.00278 * 17 15 13 21 21 C 1.39973 * 119.99797 * 182.53904 * 11 9 8 22 22 C 1.38867 * 120.04550 * 187.59463 * 21 11 9 23 23 C 1.38113 * 119.95335 * 179.81525 * 22 21 11 24 24 C 1.38466 * 120.04626 * 0.44136 * 23 22 21 25 25 F 1.35099 * 119.95427 * 179.76632 * 24 23 22 26 26 C 1.38479 * 120.09324 * 359.79312 * 24 23 22 27 27 C 1.38105 * 120.04783 * 359.97438 * 26 24 23 28 28 H 1.09005 * 109.46851 * 300.00492 * 1 2 3 29 29 H 1.09001 * 109.47085 * 59.99658 * 1 2 3 30 30 H 1.08992 * 109.47410 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46826 * 119.99858 * 2 1 3 32 32 H 1.09005 * 109.47325 * 239.99748 * 2 1 3 33 33 H 1.08008 * 125.57123 * 179.97438 * 6 4 3 34 34 H 1.08007 * 126.82826 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.46958 * 202.25714 * 12 11 9 36 36 H 1.09004 * 109.47295 * 322.25219 * 12 11 9 37 37 H 0.97001 * 120.00674 * 179.97438 * 16 15 13 38 38 H 1.08006 * 120.02087 * 0.02562 * 22 21 11 39 39 H 1.07998 * 119.97493 * 180.18734 * 23 22 21 40 40 H 1.08000 * 119.97549 * 179.97438 * 26 24 23 41 41 H 1.07994 * 120.02598 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3844 2.1319 -1.0881 5 1 2.3526 1.8024 -1.9998 6 6 2.7924 3.3822 -0.7247 7 6 2.7089 3.4952 0.6128 8 6 2.2028 2.2092 1.1046 9 6 1.9357 1.8405 2.5049 10 8 1.3476 0.8067 2.7599 11 7 2.3426 2.6485 3.5039 12 6 3.0012 3.9202 3.1953 13 6 1.9587 4.9647 2.8903 14 1 0.9103 4.7072 2.9234 15 6 2.3431 6.2495 2.5699 16 7 3.6197 6.5632 2.5301 17 14 1.0509 7.5445 2.1925 18 1 0.6645 8.2387 3.4471 19 1 1.6051 8.5314 1.2312 20 1 -0.1443 6.8929 1.5990 21 6 2.1359 2.2725 4.8363 22 6 2.4089 3.1681 5.8618 23 6 2.2007 2.7964 7.1756 24 6 1.7286 1.5287 7.4710 25 9 1.5300 1.1655 8.7570 26 6 1.4602 0.6324 6.4500 27 6 1.6626 1.0016 5.1347 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 3.1283 4.1547 -1.4007 34 1 2.9605 4.3618 1.2063 35 1 3.5952 4.2389 4.0519 36 1 3.6513 3.7921 2.3298 37 1 3.8903 7.4670 2.3043 38 1 2.7807 4.1558 5.6320 39 1 2.4101 3.4937 7.9733 40 1 1.0925 -0.3561 6.6826 41 1 1.4536 0.3022 4.3389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556836776.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:44 Heat of formation + Delta-G solvation = 5.513942 kcal Electronic energy + Delta-G solvation = -26643.738482 eV Core-core repulsion = 22825.483127 eV Total energy + Delta-G solvation = -3818.255355 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.75047 -42.31969 -41.11909 -38.89801 -37.02551 -34.64896 -34.37052 -32.33415 -31.97398 -30.17499 -29.49190 -28.62139 -25.42685 -24.87012 -23.92579 -23.55600 -22.10984 -21.48910 -19.55859 -18.64122 -18.61732 -18.50890 -17.88637 -17.38873 -16.55219 -16.46892 -16.13327 -15.94359 -15.58350 -15.27590 -15.17659 -14.75340 -14.54930 -14.47220 -14.29301 -14.20404 -13.95012 -13.70568 -13.39664 -13.14749 -12.95208 -12.82353 -12.76826 -12.26556 -12.19985 -12.00878 -11.88814 -11.78279 -11.56200 -10.75326 -10.62942 -10.23119 -9.99402 -9.54646 -9.02511 -8.62606 -8.16500 -6.29453 0.13863 0.36076 0.95475 1.40482 1.44594 1.52945 1.73523 2.13302 2.40799 2.51635 2.55844 2.91282 3.11636 3.41363 3.77154 3.91884 3.99557 4.13367 4.23411 4.37771 4.42001 4.49892 4.53889 4.60007 4.72358 4.79891 4.92988 5.01500 5.08810 5.13098 5.18302 5.29081 5.30677 5.38464 5.43276 5.45678 5.57999 5.70792 5.77118 6.00901 6.09179 6.21751 6.26990 6.49452 6.79172 6.84688 7.31549 7.39914 8.85358 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.009295 B = 0.006258 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.519497 B = 4472.903591 C = 6875.951276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.051 4.051 3 C 0.108 3.892 4 N -0.533 5.533 5 H 0.431 0.569 6 C -0.036 4.036 7 C -0.186 4.186 8 C -0.269 4.269 9 C 0.585 3.415 10 O -0.559 6.559 11 N -0.540 5.540 12 C 0.226 3.774 13 C -0.526 4.526 14 H 0.040 0.960 15 C 0.038 3.962 16 N -0.908 5.908 17 Si 0.944 3.056 18 H -0.279 1.279 19 H -0.273 1.273 20 H -0.279 1.279 21 C 0.142 3.858 22 C -0.138 4.138 23 C -0.124 4.124 24 C 0.047 3.953 25 F -0.147 7.147 26 C -0.126 4.126 27 C -0.159 4.159 28 H 0.033 0.967 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.191 0.809 34 H 0.181 0.819 35 H 0.029 0.971 36 H 0.062 0.938 37 H 0.271 0.729 38 H 0.133 0.867 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.330 -9.524 -5.248 10.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.089 4.089 3 C -0.013 4.013 4 N -0.130 5.130 5 H 0.271 0.729 6 C -0.162 4.162 7 C -0.208 4.208 8 C -0.279 4.279 9 C 0.381 3.619 10 O -0.443 6.443 11 N -0.257 5.257 12 C 0.107 3.893 13 C -0.565 4.565 14 H 0.059 0.941 15 C -0.164 4.164 16 N -0.547 5.547 17 Si 0.771 3.229 18 H -0.205 1.205 19 H -0.198 1.198 20 H -0.204 1.204 21 C 0.046 3.954 22 C -0.158 4.158 23 C -0.144 4.144 24 C 0.027 3.973 25 F -0.126 7.126 26 C -0.145 4.145 27 C -0.179 4.179 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.208 0.792 34 H 0.198 0.802 35 H 0.047 0.953 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.151 0.849 39 H 0.172 0.828 40 H 0.174 0.826 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -1.451 -9.847 -5.369 11.309 hybrid contribution -0.514 1.284 0.011 1.383 sum -1.965 -8.563 -5.359 10.291 Atomic orbital electron populations 1.21603 0.93933 1.02555 1.01163 1.20230 0.96698 0.87832 1.04168 1.20491 0.99783 0.95330 0.85675 1.41458 1.51400 1.11321 1.08777 0.72928 1.22134 1.09061 0.88739 0.96286 1.23923 1.02747 0.98879 0.95272 1.20062 1.18467 0.97904 0.91453 1.17858 0.76952 0.81844 0.85250 1.90281 1.43732 1.26425 1.83860 1.45798 1.55102 1.21525 1.03279 1.20049 0.93081 0.78217 0.97947 1.21251 0.92584 0.94902 1.47730 0.94122 1.25350 0.96870 0.99286 0.94892 1.69977 1.15414 1.21069 1.48241 0.85755 0.79647 0.79311 0.78223 1.20492 1.19838 1.20389 1.18473 0.98258 0.94347 0.84335 1.20925 1.03581 0.99922 0.91406 1.21031 1.00916 0.95543 0.96861 1.17724 1.06008 0.95120 0.78458 1.91436 1.93435 1.92167 1.35548 1.21280 1.01564 1.00550 0.91135 1.22516 1.00797 0.96199 0.98339 0.94786 0.92399 0.90296 0.90184 0.88136 0.79208 0.80245 0.95316 0.92048 0.91971 0.84947 0.82795 0.82647 0.80330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 9.83 71.98 0.71 -2.57 16 2 C -0.05 -1.27 5.71 29.85 0.17 -1.10 16 3 C 0.11 3.34 6.43 41.78 0.27 3.61 16 4 N -0.53 -13.36 5.90 -182.71 -1.08 -14.44 16 5 H 0.43 6.70 8.96 -92.71 -0.83 5.87 16 6 C -0.04 -1.11 11.89 83.12 0.99 -0.12 16 7 C -0.19 -7.59 8.21 23.62 0.19 -7.40 16 8 C -0.27 -10.84 6.07 -19.05 -0.12 -10.95 16 9 C 0.59 25.78 7.51 86.61 0.65 26.43 16 10 O -0.56 -23.88 10.84 -4.16 -0.05 -23.93 16 11 N -0.54 -24.56 2.71 -639.08 -1.73 -26.29 16 12 C 0.23 10.95 4.19 85.63 0.36 11.31 16 13 C -0.53 -26.98 7.14 25.60 0.18 -26.80 16 14 H 0.04 2.24 7.81 -2.91 -0.02 2.21 16 15 C 0.04 1.89 4.77 84.65 0.40 2.29 16 16 N -0.91 -46.85 13.21 21.45 0.28 -46.57 16 17 Si 0.94 41.06 29.54 68.60 2.03 43.08 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 C 0.14 6.04 6.49 38.14 0.25 6.29 16 22 C -0.14 -5.45 9.16 22.39 0.21 -5.24 16 23 C -0.12 -4.19 10.02 22.29 0.22 -3.97 16 24 C 0.05 1.55 7.30 22.38 0.16 1.71 16 25 F -0.15 -4.58 17.26 44.97 0.78 -3.80 16 26 C -0.13 -4.13 10.02 22.30 0.22 -3.91 16 27 C -0.16 -6.09 8.99 22.39 0.20 -5.88 16 28 H 0.03 1.07 7.45 -2.38 -0.02 1.05 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 2.28 7.03 -2.39 -0.02 2.27 16 32 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.19 4.64 8.06 -2.91 -0.02 4.62 16 34 H 0.18 8.50 3.08 -2.91 -0.01 8.49 16 35 H 0.03 1.45 6.12 -2.39 -0.01 1.44 16 36 H 0.06 3.08 4.70 -2.39 -0.01 3.06 16 37 H 0.27 13.25 8.31 -92.71 -0.77 12.48 16 38 H 0.13 5.57 6.20 -2.91 -0.02 5.55 16 39 H 0.15 4.33 8.06 -2.91 -0.02 4.31 16 40 H 0.16 4.13 8.06 -2.91 -0.02 4.10 16 41 H 0.18 7.10 4.65 -52.77 -0.25 6.85 16 Total: -1.00 -60.55 337.43 5.34 -55.21 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: 0.04 Total: 33.04 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: 5.07 Total: -16.30 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -2.53 Total: -87.29 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.05 Total: -23.93 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.78 Total: -3.80 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Total: -60.55 5.34 -55.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556836776.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.719 kcal (2) G-P(sol) polarization free energy of solvation -60.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds