Wall clock time and date at job start Tue Mar 31 2020 11:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47047 * 2 1 4 4 H 1.09000 * 109.46988 * 179.82369 * 3 2 1 5 5 C 1.50700 * 109.47013 * 299.82139 * 3 2 1 6 6 H 1.07995 * 119.99727 * 120.00426 * 5 3 2 7 7 C 1.37878 * 119.99984 * 300.00206 * 5 3 2 8 8 N 1.31517 * 119.99957 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99705 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47210 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46546 * 120.00357 * 9 7 5 12 12 H 1.48505 * 109.47210 * 240.00039 * 9 7 5 13 13 N 1.46892 * 109.47498 * 59.82605 * 3 2 1 14 14 C 1.46901 * 111.00589 * 85.92555 * 13 3 2 15 15 C 1.50695 * 109.47564 * 175.54953 * 14 13 3 16 16 C 1.33638 * 122.74686 * 94.73470 * 15 14 13 17 17 S 1.76201 * 107.92422 * 179.97438 * 16 15 14 18 18 C 1.70981 * 90.27983 * 0.27673 * 17 16 15 19 19 C 1.50698 * 124.91342 * 179.83736 * 18 17 16 20 20 C 1.50697 * 109.47413 * 269.99861 * 19 18 17 21 21 C 1.38233 * 120.00178 * 269.72951 * 20 19 18 22 22 C 1.38228 * 120.00217 * 179.76430 * 21 20 19 23 23 C 1.38241 * 120.00048 * 0.51007 * 22 21 20 24 24 C 1.38238 * 119.99457 * 359.74364 * 23 22 21 25 25 C 1.38230 * 119.99890 * 90.00184 * 20 19 18 26 26 N 1.29025 * 110.17116 * 359.83806 * 18 17 16 27 27 H 1.08997 * 109.47408 * 295.59849 * 1 2 3 28 28 H 1.08998 * 109.46985 * 175.59200 * 1 2 3 29 29 H 1.09000 * 109.46477 * 55.59144 * 1 2 3 30 30 H 1.09004 * 109.46384 * 119.99809 * 2 1 3 31 31 H 1.08994 * 109.47291 * 239.99250 * 2 1 3 32 32 H 0.97000 * 119.99374 * 179.97438 * 8 7 5 33 33 H 1.00901 * 111.00536 * 209.88426 * 13 3 2 34 34 H 1.08998 * 109.46976 * 295.55706 * 14 13 3 35 35 H 1.09004 * 109.46501 * 55.55076 * 14 13 3 36 36 H 1.08005 * 126.04142 * 0.03981 * 16 15 14 37 37 H 1.09003 * 109.47139 * 30.00167 * 19 18 17 38 38 H 1.09007 * 109.47012 * 149.99689 * 19 18 17 39 39 H 1.08008 * 119.99917 * 359.97438 * 21 20 19 40 40 H 1.08001 * 120.00513 * 180.23175 * 22 21 20 41 41 H 1.07995 * 120.00239 * 179.72615 * 23 22 21 42 42 H 1.08002 * 119.99192 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.00440 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0032 5 6 1.5413 2.1516 -1.2327 6 1 0.9202 3.0298 -1.1363 7 6 1.8780 1.6792 -2.4835 8 7 2.6341 0.6095 -2.6008 9 14 1.2592 2.5578 -4.0114 10 1 0.4331 3.7250 -3.6109 11 1 2.4163 3.0239 -4.8171 12 1 0.4367 1.6232 -4.8210 13 7 1.5470 2.1362 1.1972 14 6 2.4392 1.9096 2.3421 15 6 1.9631 2.7219 3.5186 16 6 1.1625 2.2228 4.4652 17 16 0.8544 3.4972 5.6423 18 6 1.8260 4.5768 4.7402 19 6 2.0938 6.0125 5.1120 20 6 1.0423 6.8964 4.4924 21 6 1.2437 7.4323 3.2341 22 6 0.2771 8.2391 2.6637 23 6 -0.8864 8.5189 3.3559 24 6 -1.0854 7.9873 4.6164 25 6 -0.1210 7.1761 5.1846 26 7 2.2968 3.9845 3.6950 27 1 -0.3634 0.4440 0.9268 28 1 -0.3633 -1.0246 -0.0790 29 1 -0.3632 0.5807 -0.8479 30 1 1.8933 -0.5138 0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 2.8706 0.2770 -3.4808 33 1 1.4288 3.1226 1.0207 34 1 2.4322 0.8516 2.6042 35 1 3.4527 2.2118 2.0782 36 1 0.7740 1.2157 4.5027 37 1 2.0646 6.1184 6.1965 38 1 3.0774 6.3055 4.7447 39 1 2.1548 7.2177 2.6952 40 1 0.4327 8.6548 1.6791 41 1 -1.6396 9.1529 2.9121 42 1 -1.9942 8.2062 5.1573 43 1 -0.2763 6.7614 6.1696 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566429504.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:23 Heat of formation + Delta-G solvation = 43.443526 kcal Electronic energy + Delta-G solvation = -23193.415126 eV Core-core repulsion = 19943.017697 eV Total energy + Delta-G solvation = -3250.397429 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.01836 -39.99724 -38.01841 -35.15783 -34.19010 -32.67742 -31.76278 -31.06835 -28.73073 -28.33431 -26.43189 -24.99865 -23.94614 -23.47815 -22.02483 -20.98196 -20.61831 -18.80592 -18.19009 -17.67804 -16.99382 -16.43239 -16.28303 -16.04943 -15.76145 -15.65670 -15.29635 -14.83348 -14.55107 -14.41414 -14.20949 -14.03281 -13.86565 -13.69665 -13.34208 -13.08336 -12.89870 -12.83033 -12.69910 -12.45068 -12.32085 -12.06029 -11.97186 -11.84642 -11.60147 -11.31230 -10.81677 -10.60577 -10.55176 -10.31589 -9.81237 -9.76161 -9.56832 -9.05419 -8.11527 -6.23516 -0.23191 0.36739 0.51570 0.53991 0.76861 1.38580 1.40833 1.51874 1.80180 2.41374 2.82127 3.17072 3.19403 3.79198 3.84597 3.96171 4.06324 4.17290 4.19259 4.30879 4.38072 4.42266 4.58249 4.62179 4.67066 4.74103 4.77971 4.79217 4.88502 4.95720 5.08951 5.17524 5.21454 5.29106 5.37846 5.54600 5.57108 5.64312 5.68451 5.69295 5.81380 5.87555 6.12792 6.26380 6.42756 6.72068 6.86409 6.96475 7.44791 8.93769 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012092 B = 0.003701 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.024531 B = 7563.035411 C = 9154.974172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.097 4.097 3 C 0.222 3.778 4 H -0.035 1.035 5 C -0.523 4.523 6 H 0.051 0.949 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.278 1.278 13 N -0.669 5.669 14 C 0.138 3.862 15 C 0.058 3.942 16 C -0.246 4.246 17 S 0.170 5.830 18 C 0.044 3.956 19 C -0.001 4.001 20 C -0.092 4.092 21 C -0.122 4.122 22 C -0.135 4.135 23 C -0.128 4.128 24 C -0.125 4.125 25 C -0.116 4.116 26 N -0.497 5.497 27 H 0.050 0.950 28 H 0.035 0.965 29 H 0.033 0.967 30 H 0.024 0.976 31 H 0.060 0.940 32 H 0.262 0.738 33 H 0.327 0.673 34 H 0.085 0.915 35 H 0.018 0.982 36 H 0.191 0.809 37 H 0.125 0.875 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.127 0.873 41 H 0.139 0.861 42 H 0.147 0.853 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.795 11.960 20.212 24.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.136 4.136 3 C 0.113 3.887 4 H -0.018 1.018 5 C -0.561 4.561 6 H 0.069 0.931 7 C -0.180 4.180 8 N -0.554 5.554 9 Si 0.779 3.221 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.204 1.204 13 N -0.299 5.299 14 C 0.006 3.994 15 C -0.073 4.073 16 C -0.386 4.386 17 S 0.425 5.575 18 C -0.234 4.234 19 C -0.041 4.041 20 C -0.094 4.094 21 C -0.140 4.140 22 C -0.153 4.153 23 C -0.145 4.145 24 C -0.143 4.143 25 C -0.134 4.134 26 N -0.213 5.213 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.143 0.857 34 H 0.104 0.896 35 H 0.036 0.964 36 H 0.208 0.792 37 H 0.144 0.856 38 H 0.118 0.882 39 H 0.131 0.869 40 H 0.145 0.855 41 H 0.157 0.843 42 H 0.165 0.835 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.368 11.684 20.834 24.721 hybrid contribution 1.232 0.147 -2.463 2.758 sum -5.136 11.831 18.371 22.446 Atomic orbital electron populations 1.21300 0.95943 0.98410 1.00739 1.21307 0.96291 0.97228 0.98785 1.18980 0.90781 0.92416 0.86474 1.01797 1.21411 1.31438 1.11830 0.91462 0.93105 1.25586 0.95176 0.95648 1.01569 1.70017 1.37566 1.23802 1.24019 0.85577 0.78111 0.78723 0.79664 1.19487 1.20735 1.20378 1.60764 1.48390 1.15473 1.05248 1.20363 0.93381 0.97724 0.87904 1.20092 0.99116 0.90041 0.98021 1.27064 1.06041 1.06071 0.99440 1.83353 1.47018 1.01620 1.25464 1.27196 0.99768 1.01897 0.94523 1.19322 0.98890 0.83353 1.02537 1.19709 0.96328 0.98210 0.95127 1.21221 0.99850 0.97588 0.95349 1.21390 0.94609 0.98845 1.00476 1.21490 0.97421 1.00187 0.95452 1.21478 0.99840 0.97298 0.95669 1.21331 0.92870 0.98379 1.00840 1.66025 1.25756 1.09283 1.20203 0.93080 0.94608 0.94758 0.95714 0.92199 0.92918 0.85681 0.89647 0.96412 0.79232 0.85641 0.88167 0.86910 0.85492 0.84268 0.83488 0.83731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.76 9.53 71.98 0.69 -4.07 16 2 C -0.10 -4.79 5.59 30.60 0.17 -4.62 16 3 C 0.22 11.52 2.30 44.17 0.10 11.62 16 4 H -0.04 -2.07 7.71 -2.39 -0.02 -2.09 16 5 C -0.52 -29.18 7.26 25.60 0.19 -28.99 16 6 H 0.05 2.86 7.60 -2.91 -0.02 2.84 16 7 C 0.02 1.09 5.30 84.65 0.45 1.54 16 8 N -0.91 -53.04 11.32 21.45 0.24 -52.80 16 9 Si 0.95 44.36 29.54 68.60 2.03 46.39 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 N -0.67 -29.87 5.64 -499.49 -2.82 -32.69 16 14 C 0.14 5.37 5.97 85.56 0.51 5.89 16 15 C 0.06 1.96 6.21 41.52 0.26 2.22 16 16 C -0.25 -6.70 11.12 66.78 0.74 -5.96 16 17 S 0.17 3.55 23.18 -56.49 -1.31 2.24 16 18 C 0.04 1.12 6.62 88.52 0.59 1.70 16 19 C 0.00 -0.01 5.93 29.10 0.17 0.16 16 20 C -0.09 -1.94 5.12 -19.87 -0.10 -2.04 16 21 C -0.12 -2.96 9.70 22.27 0.22 -2.75 16 22 C -0.14 -3.02 10.05 22.27 0.22 -2.79 16 23 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 24 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 25 C -0.12 -2.02 9.70 22.27 0.22 -1.81 16 26 N -0.50 -16.44 10.53 -179.41 -1.89 -18.33 16 27 H 0.05 2.15 7.74 -2.39 -0.02 2.13 16 28 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.03 1.66 7.07 -2.39 -0.02 1.64 16 30 H 0.02 1.10 7.61 -2.38 -0.02 1.09 16 31 H 0.06 3.30 6.06 -2.39 -0.01 3.28 16 32 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 33 H 0.33 15.37 8.13 -89.69 -0.73 14.64 16 34 H 0.09 3.13 7.57 -2.39 -0.02 3.11 16 35 H 0.02 0.75 7.94 -2.38 -0.02 0.73 16 36 H 0.19 4.46 8.06 -2.91 -0.02 4.43 16 37 H 0.13 1.50 8.09 -2.39 -0.02 1.48 16 38 H 0.10 1.94 8.08 -2.38 -0.02 1.92 16 39 H 0.11 2.90 8.06 -2.91 -0.02 2.88 16 40 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 41 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 42 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -65.37 370.42 1.40 -63.97 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.28 Total: 25.18 kcal Atomic # 6 Polarization: -38.82 SS G_CDS: 4.86 Total: -33.96 kcal Atomic # 7 Polarization: -99.36 SS G_CDS: -4.46 Total: -103.82 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: 3.55 SS G_CDS: -1.31 Total: 2.24 kcal Total: -65.37 1.40 -63.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566429504.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.416 kcal (2) G-P(sol) polarization free energy of solvation -65.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds