Wall clock time and date at job start Tue Mar 31 2020 11:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46857 * 2 1 4 4 H 1.09000 * 109.46917 * 177.96385 * 3 2 1 5 5 C 1.50701 * 109.47126 * 57.97008 * 3 2 1 6 6 H 1.08001 * 119.99664 * 239.99452 * 5 3 2 7 7 C 1.37873 * 120.00205 * 59.99398 * 5 3 2 8 8 N 1.31514 * 120.00303 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00396 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47163 * 59.99770 * 9 7 5 11 11 H 1.48495 * 109.47794 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47116 * 300.00343 * 9 7 5 13 13 N 1.46898 * 109.47769 * 297.96487 * 3 2 1 14 14 C 1.46895 * 111.00028 * 273.75429 * 13 3 2 15 15 C 1.50706 * 109.47003 * 174.89990 * 14 13 3 16 16 C 1.33638 * 122.75065 * 94.73001 * 15 14 13 17 17 S 1.76197 * 107.92165 * 179.97438 * 16 15 14 18 18 C 1.70978 * 90.28562 * 0.27375 * 17 16 15 19 19 C 1.50696 * 124.91865 * 179.84203 * 18 17 16 20 20 C 1.50702 * 109.47108 * 269.99941 * 19 18 17 21 21 C 1.38238 * 120.00009 * 269.72779 * 20 19 18 22 22 C 1.38235 * 119.99760 * 179.76392 * 21 20 19 23 23 C 1.38234 * 119.99900 * 0.50578 * 22 21 20 24 24 C 1.38234 * 120.00295 * 359.74708 * 23 22 21 25 25 C 1.38234 * 119.99789 * 89.99749 * 20 19 18 26 26 N 1.29033 * 110.16465 * 359.83841 * 18 17 16 27 27 H 1.09004 * 109.46566 * 294.44524 * 1 2 3 28 28 H 1.08999 * 109.47009 * 174.44711 * 1 2 3 29 29 H 1.08995 * 109.47286 * 54.44409 * 1 2 3 30 30 H 1.08992 * 109.47174 * 120.00263 * 2 1 3 31 31 H 1.09003 * 109.46739 * 240.00630 * 2 1 3 32 32 H 0.96992 * 120.00488 * 180.02562 * 8 7 5 33 33 H 1.00898 * 110.99953 * 149.79264 * 13 3 2 34 34 H 1.09005 * 109.47061 * 294.89261 * 14 13 3 35 35 H 1.08997 * 109.47274 * 54.89776 * 14 13 3 36 36 H 1.07999 * 126.04125 * 0.03702 * 16 15 14 37 37 H 1.09000 * 109.47011 * 29.99617 * 19 18 17 38 38 H 1.08995 * 109.47156 * 149.99975 * 19 18 17 39 39 H 1.07998 * 119.99594 * 359.97438 * 21 20 19 40 40 H 1.07997 * 119.99935 * 180.22835 * 22 21 20 41 41 H 1.07999 * 119.99565 * 179.71927 * 23 22 21 42 42 H 1.07995 * 119.99968 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.00284 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0365 5 6 1.4970 2.1672 1.2045 6 1 0.8799 3.0440 1.0743 7 6 1.7878 1.7111 2.4727 8 7 2.5396 0.6437 2.6313 9 14 1.1141 2.6090 3.9657 10 1 -0.3700 2.6082 3.9159 11 1 1.5687 1.9239 5.2023 12 1 1.6086 4.0093 3.9660 13 7 1.5909 2.1207 -1.2232 14 6 2.5281 1.8858 -2.3297 15 6 1.9735 2.4893 -3.5944 16 6 2.3000 3.7153 -4.0141 17 16 1.4360 4.0213 -5.5189 18 6 0.7154 2.4734 -5.4299 19 6 -0.2540 1.9139 -6.4389 20 6 -1.6610 2.2743 -6.0371 21 6 -2.3861 1.4254 -5.2218 22 6 -3.6749 1.7584 -4.8494 23 6 -4.2425 2.9353 -5.3006 24 6 -3.5194 3.7818 -6.1201 25 6 -2.2286 3.4513 -6.4883 26 7 1.1220 1.8535 -4.3737 27 1 -0.3632 0.4253 0.9356 28 1 -0.3633 -1.0228 -0.0994 29 1 -0.3633 0.5975 -0.8360 30 1 1.8934 -0.5138 0.8899 31 1 1.8934 -0.5138 -0.8901 32 1 2.7439 0.3225 3.5234 33 1 1.4616 3.1084 -1.0623 34 1 3.4878 2.3476 -2.0973 35 1 2.6650 0.8134 -2.4685 36 1 2.9750 4.3977 -3.5189 37 1 -0.0381 2.3332 -7.4215 38 1 -0.1535 0.8292 -6.4766 39 1 -1.9442 0.5037 -4.8732 40 1 -4.2400 1.0970 -4.2095 41 1 -5.2511 3.1933 -5.0132 42 1 -3.9630 4.7010 -6.4729 43 1 -1.6639 4.1122 -7.1292 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566429506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:26 Heat of formation + Delta-G solvation = 44.759474 kcal Electronic energy + Delta-G solvation = -23270.886924 eV Core-core repulsion = 20020.546559 eV Total energy + Delta-G solvation = -3250.340365 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.98410 -39.97604 -38.02856 -35.15927 -34.18022 -32.70400 -31.74339 -31.01342 -28.71457 -28.32940 -26.45382 -25.06331 -23.87217 -23.45780 -21.98918 -20.98057 -20.57318 -18.97872 -18.07779 -17.65917 -16.89288 -16.40487 -16.28539 -16.00916 -15.88448 -15.68882 -15.19414 -14.84282 -14.50536 -14.43588 -14.20054 -14.03907 -13.81990 -13.63730 -13.34402 -13.22221 -12.89225 -12.84436 -12.72440 -12.44922 -12.24734 -12.03927 -11.86999 -11.83112 -11.63794 -11.34227 -10.83202 -10.55089 -10.53064 -10.30230 -9.79338 -9.74059 -9.54381 -9.01528 -8.09805 -6.22078 -0.23256 0.38159 0.53481 0.55468 0.77943 1.42014 1.43703 1.50825 1.84090 2.42794 2.84273 3.19011 3.22106 3.77408 3.86665 3.97978 4.03269 4.19098 4.29063 4.32546 4.38624 4.40323 4.58179 4.61846 4.63879 4.74783 4.78137 4.80174 4.88067 4.92702 5.09671 5.19445 5.22157 5.28104 5.37806 5.53482 5.58753 5.66074 5.70479 5.70766 5.77858 5.86532 6.14665 6.25284 6.46284 6.74908 6.92678 7.00956 7.46359 8.95431 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013545 B = 0.003459 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.716622 B = 8092.745412 C = 9056.980147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.095 4.095 3 C 0.225 3.775 4 H -0.030 1.030 5 C -0.524 4.524 6 H 0.055 0.945 7 C 0.020 3.980 8 N -0.916 5.916 9 Si 0.954 3.046 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.271 1.271 13 N -0.673 5.673 14 C 0.137 3.863 15 C 0.069 3.931 16 C -0.264 4.264 17 S 0.165 5.835 18 C 0.045 3.955 19 C 0.000 4.000 20 C -0.093 4.093 21 C -0.120 4.120 22 C -0.135 4.135 23 C -0.128 4.128 24 C -0.126 4.126 25 C -0.117 4.117 26 N -0.485 5.485 27 H 0.031 0.969 28 H 0.032 0.968 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.016 0.984 32 H 0.261 0.739 33 H 0.331 0.669 34 H 0.042 0.958 35 H 0.063 0.937 36 H 0.189 0.811 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.128 0.872 41 H 0.139 0.861 42 H 0.147 0.853 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.740 7.324 -21.776 24.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.134 4.134 3 C 0.117 3.883 4 H -0.013 1.013 5 C -0.563 4.563 6 H 0.073 0.927 7 C -0.180 4.180 8 N -0.555 5.555 9 Si 0.780 3.220 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.196 1.196 13 N -0.304 5.304 14 C 0.005 3.995 15 C -0.063 4.063 16 C -0.404 4.404 17 S 0.421 5.579 18 C -0.234 4.234 19 C -0.041 4.041 20 C -0.094 4.094 21 C -0.138 4.138 22 C -0.153 4.153 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.135 4.135 26 N -0.199 5.199 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.148 0.852 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.207 0.793 37 H 0.143 0.857 38 H 0.119 0.881 39 H 0.131 0.869 40 H 0.146 0.854 41 H 0.157 0.843 42 H 0.165 0.835 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.307 6.998 -22.426 24.918 hybrid contribution 1.068 0.123 2.463 2.688 sum -7.238 7.121 -19.963 22.397 Atomic orbital electron populations 1.21249 0.96284 0.98181 1.00283 1.21289 0.96079 0.97833 0.98208 1.18904 0.91270 0.92120 0.86012 1.01263 1.21363 1.31624 1.12029 0.91270 0.92668 1.25597 0.95277 0.95677 1.01425 1.70007 1.38263 1.24239 1.22985 0.85674 0.78784 0.78801 0.78750 1.19925 1.21021 1.19615 1.60508 1.47921 1.15868 1.06131 1.20296 0.92794 0.99625 0.86822 1.20108 0.96660 0.92110 0.97410 1.27104 1.09888 1.01139 1.02252 1.83343 1.37602 1.17087 1.19889 1.27261 1.02261 0.95862 0.97972 1.19318 0.87001 1.02709 0.95063 1.19714 0.94756 0.95938 0.98996 1.21224 0.94994 1.00092 0.97516 1.21388 0.95547 0.98125 1.00216 1.21483 1.00992 0.94318 0.97754 1.21468 0.94599 1.00294 0.98012 1.21323 0.95951 0.95849 1.00343 1.66010 1.12375 1.37386 1.04171 0.94954 0.94908 0.93481 0.92220 0.96526 0.92942 0.85235 0.93995 0.91805 0.79346 0.85713 0.88103 0.86904 0.85448 0.84267 0.83539 0.83806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.87 9.46 71.98 0.68 -4.19 16 2 C -0.10 -4.87 5.58 30.60 0.17 -4.70 16 3 C 0.23 11.60 2.30 44.17 0.10 11.71 16 4 H -0.03 -1.71 7.84 -2.39 -0.02 -1.73 16 5 C -0.52 -28.68 7.34 25.60 0.19 -28.49 16 6 H 0.06 2.99 7.60 -2.91 -0.02 2.96 16 7 C 0.02 1.08 5.30 84.65 0.45 1.53 16 8 N -0.92 -52.84 11.34 21.45 0.24 -52.60 16 9 Si 0.95 43.69 29.54 68.60 2.03 45.72 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 N -0.67 -29.76 5.50 -499.47 -2.75 -32.51 16 14 C 0.14 5.27 5.89 85.56 0.50 5.77 16 15 C 0.07 2.31 6.30 41.52 0.26 2.58 16 16 C -0.26 -7.11 11.12 66.78 0.74 -6.36 16 17 S 0.17 3.47 23.18 -56.49 -1.31 2.16 16 18 C 0.04 1.14 6.62 88.52 0.59 1.72 16 19 C 0.00 -0.01 5.93 29.10 0.17 0.16 16 20 C -0.09 -1.97 5.12 -19.86 -0.10 -2.07 16 21 C -0.12 -2.95 9.70 22.27 0.22 -2.74 16 22 C -0.13 -3.03 10.05 22.27 0.22 -2.80 16 23 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 24 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 25 C -0.12 -2.06 9.70 22.27 0.22 -1.84 16 26 N -0.48 -16.17 10.53 -179.40 -1.89 -18.06 16 27 H 0.03 1.62 7.37 -2.39 -0.02 1.60 16 28 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.05 2.22 7.50 -2.39 -0.02 2.20 16 30 H 0.06 3.36 6.13 -2.39 -0.01 3.34 16 31 H 0.02 0.79 7.43 -2.39 -0.02 0.77 16 32 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 33 H 0.33 14.35 8.24 -89.70 -0.74 13.61 16 34 H 0.04 1.54 8.10 -2.38 -0.02 1.52 16 35 H 0.06 2.64 7.39 -2.39 -0.02 2.63 16 36 H 0.19 4.30 8.06 -2.91 -0.02 4.28 16 37 H 0.12 1.52 8.09 -2.39 -0.02 1.50 16 38 H 0.10 1.97 8.08 -2.39 -0.02 1.95 16 39 H 0.11 2.96 8.06 -2.91 -0.02 2.93 16 40 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 41 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 42 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 43 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -65.21 370.46 1.45 -63.76 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.27 Total: 25.37 kcal Atomic # 6 Polarization: -38.69 SS G_CDS: 4.86 Total: -33.84 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -4.39 Total: -103.17 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -1.31 Total: 2.16 kcal Total: -65.21 1.45 -63.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566429506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.522 kcal (2) G-P(sol) polarization free energy of solvation -65.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds