Wall clock time and date at job start Tue Mar 31 2020 11:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46861 * 2 1 4 4 N 1.46497 * 109.47436 * 239.99837 * 2 1 3 5 5 C 1.34946 * 126.03697 * 84.71615 * 4 2 1 6 6 C 1.35321 * 107.74219 * 179.84238 * 5 4 2 7 7 C 1.39874 * 107.92262 * 0.41861 * 6 5 4 8 8 C 1.50699 * 125.89633 * 179.71784 * 7 6 5 9 9 N 1.46505 * 109.46642 * 95.00515 * 8 7 6 10 10 S 1.65603 * 119.99629 * 164.41832 * 9 8 7 11 11 O 1.42098 * 106.40069 * 176.26982 * 10 9 8 12 12 O 1.42093 * 106.40438 * 309.19372 * 10 9 8 13 13 N 1.65600 * 107.21687 * 62.73341 * 10 9 8 14 14 C 1.46500 * 120.00089 * 273.05604 * 13 10 9 15 15 C 1.46501 * 120.00203 * 93.05950 * 13 10 9 16 16 C 1.50701 * 109.46940 * 95.55357 * 15 13 10 17 17 H 1.08007 * 120.00178 * 4.95637 * 16 15 13 18 18 C 1.37876 * 120.00242 * 184.95886 * 16 15 13 19 19 N 1.31511 * 120.00547 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99848 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46920 * 89.99986 * 20 18 16 22 22 H 1.48496 * 109.47295 * 210.00252 * 20 18 16 23 23 H 1.48498 * 109.47223 * 330.00243 * 20 18 16 24 24 N 1.30836 * 108.19956 * 359.73756 * 7 6 5 25 25 H 1.09006 * 109.46657 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47617 * 300.00172 * 1 2 3 27 27 H 1.09001 * 109.47071 * 60.00846 * 1 2 3 28 28 H 1.09000 * 109.47318 * 119.99640 * 2 1 3 29 29 H 1.09001 * 109.47035 * 299.99161 * 3 2 1 30 30 H 1.08995 * 109.47610 * 59.99801 * 3 2 1 31 31 H 1.09000 * 109.47092 * 180.02562 * 3 2 1 32 32 H 1.07994 * 126.12764 * 359.97438 * 5 4 2 33 33 H 1.08009 * 126.03793 * 180.16311 * 6 5 4 34 34 H 1.09004 * 109.46733 * 214.99754 * 8 7 6 35 35 H 1.08992 * 109.47554 * 335.00489 * 8 7 6 36 36 H 0.96998 * 120.00159 * 344.41248 * 9 8 7 37 37 H 1.09006 * 109.46931 * 90.00182 * 14 13 10 38 38 H 1.08996 * 109.47711 * 210.00307 * 14 13 10 39 39 H 1.09002 * 109.47167 * 330.00901 * 14 13 10 40 40 H 1.08995 * 109.47388 * 215.55233 * 15 13 10 41 41 H 1.09000 * 109.47118 * 335.55768 * 15 13 10 42 42 H 0.97003 * 120.00766 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1883 -0.1406 -2.4166 6 6 2.6568 -1.1052 -3.2420 7 6 2.7682 -2.2875 -2.5028 8 6 3.2458 -3.6166 -3.0286 9 7 4.6773 -3.7643 -2.7542 10 16 5.3916 -5.2545 -2.8627 11 8 6.7786 -5.0525 -2.6290 12 8 4.5937 -6.1393 -2.0885 13 7 5.2501 -5.7524 -4.4357 14 6 4.0477 -6.4661 -4.8728 15 6 6.3274 -5.4794 -5.3903 16 6 7.2339 -6.6798 -5.4815 17 1 6.9847 -7.5864 -4.9500 18 6 8.3815 -6.6208 -6.2435 19 7 9.1723 -7.6685 -6.3236 20 14 8.8123 -5.0530 -7.1633 21 1 9.6422 -4.1811 -6.2936 22 1 9.5724 -5.3934 -8.3927 23 1 7.5647 -4.3382 -7.5346 24 7 2.3858 -2.0401 -1.2763 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.9884 0.8859 -2.6859 33 1 2.8979 -0.9846 -4.2879 34 1 2.6969 -4.4200 -2.5373 35 1 3.0751 -3.6645 -4.1040 36 1 5.2067 -2.9894 -2.5091 37 1 3.3068 -5.7482 -5.2248 38 1 4.3047 -7.1493 -5.6823 39 1 3.6368 -7.0318 -4.0366 40 1 5.8998 -5.2716 -6.3711 41 1 6.9010 -4.6158 -5.0535 42 1 9.9799 -7.6269 -6.8593 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567085619.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:36 Heat of formation + Delta-G solvation = 6.077637 kcal Electronic energy + Delta-G solvation = -24578.883590 eV Core-core repulsion = 20916.016592 eV Total energy + Delta-G solvation = -3662.866999 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.48173 -36.72186 -36.45768 -35.60145 -35.15595 -34.77579 -32.34745 -30.54774 -30.06450 -28.35329 -27.84616 -26.19408 -25.11189 -22.94050 -21.88063 -20.48300 -20.08802 -18.92884 -17.49659 -17.24181 -16.95203 -16.54250 -16.04003 -15.51142 -15.08136 -14.70653 -14.36601 -14.17815 -13.96739 -13.71923 -13.59197 -13.18950 -13.07119 -12.88104 -12.68920 -12.50800 -12.41565 -12.28723 -11.89145 -11.70472 -11.62310 -11.49108 -11.37163 -11.27795 -11.17463 -10.77316 -10.61601 -10.41491 -10.24043 -9.54103 -9.53052 -9.35678 -8.78217 -8.55619 -8.08883 -6.05066 -4.04351 1.13859 1.70122 2.18989 2.56371 3.30673 3.36117 3.37944 3.60082 4.00880 4.15656 4.35470 4.42036 4.47157 4.51330 4.55561 4.90736 4.93032 5.03842 5.12968 5.16477 5.25924 5.27309 5.34851 5.43943 5.53683 5.60956 5.61523 5.67439 5.89748 5.93591 5.98348 6.26629 6.43994 6.49465 6.76878 6.81297 7.03178 7.17811 7.47161 7.55101 7.61789 8.52220 8.99821 9.54358 11.08463 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.023309 B = 0.003117 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.977811 B = 8980.451464 C = 9461.611610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.153 3.847 3 C -0.164 4.164 4 N -0.366 5.366 5 C 0.051 3.949 6 C -0.258 4.258 7 C 0.065 3.935 8 C 0.204 3.796 9 N -1.129 6.129 10 S 2.784 3.216 11 O -0.962 6.962 12 O -0.990 6.990 13 N -0.990 5.990 14 C 0.091 3.909 15 C 0.228 3.772 16 C -0.533 4.533 17 H 0.078 0.922 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.873 3.127 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.265 1.265 24 N -0.276 5.276 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.103 0.897 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.171 0.829 33 H 0.150 0.850 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.414 0.586 37 H 0.040 0.960 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.033 0.967 41 H 0.031 0.969 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.053 19.721 7.998 28.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.051 3.949 3 C -0.222 4.222 4 N -0.150 5.150 5 C -0.094 4.094 6 C -0.288 4.288 7 C -0.103 4.103 8 C 0.076 3.924 9 N -0.889 5.889 10 S 2.791 3.209 11 O -0.945 6.945 12 O -0.974 6.974 13 N -0.832 5.832 14 C -0.055 4.055 15 C 0.104 3.896 16 C -0.572 4.572 17 H 0.096 0.904 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.700 3.300 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.189 1.189 24 N -0.099 5.099 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.121 0.879 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.188 0.812 33 H 0.168 0.832 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.247 0.753 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.828 18.593 9.857 28.237 hybrid contribution 0.537 1.767 -1.599 2.443 sum -18.291 20.360 8.258 28.588 Atomic orbital electron populations 1.22239 0.93567 1.03450 1.03000 1.21280 0.94831 0.92735 0.86031 1.22196 1.02489 0.93937 1.03613 1.48904 1.50393 1.07274 1.08416 1.22428 1.01482 0.99921 0.85616 1.21457 1.13295 0.92280 1.01772 1.22222 1.00032 0.96529 0.91488 1.19450 0.80938 0.92204 0.99809 1.56279 1.16393 1.29224 1.86976 1.01936 0.72928 0.72754 0.73251 1.93644 1.30783 1.85360 1.84728 1.93538 1.71888 1.63501 1.68433 1.57387 1.26762 1.69646 1.29408 1.21436 0.85689 0.96548 1.01839 1.19430 0.84676 0.97271 0.88187 1.21395 1.06071 0.99301 1.30465 0.90396 1.24879 0.95716 0.96223 0.96170 1.69896 1.13535 1.29467 1.40468 0.86901 0.79237 0.84145 0.79719 1.19771 1.21041 1.18934 1.77403 1.19853 0.92898 1.19698 0.91480 0.90475 0.91911 0.87882 0.91529 0.89933 0.91361 0.81183 0.83226 0.89240 0.89763 0.75332 0.94097 0.90079 0.91223 0.94919 0.95074 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 9.52 37.16 0.35 -0.54 16 2 C 0.15 1.04 3.93 -67.93 -0.27 0.77 16 3 C -0.16 -0.72 8.84 37.16 0.33 -0.39 16 4 N -0.37 -3.71 3.52 -54.87 -0.19 -3.90 16 5 C 0.05 0.45 10.59 -17.22 -0.18 0.27 16 6 C -0.26 -2.70 10.74 -40.01 -0.43 -3.13 16 7 C 0.06 0.82 6.62 -82.41 -0.55 0.28 16 8 C 0.20 2.64 6.82 -5.19 -0.04 2.61 16 9 N -1.13 -17.14 6.04 -11.65 -0.07 -17.21 16 10 S 2.78 55.50 6.09 -107.50 -0.65 54.85 16 11 O -0.96 -23.17 16.99 -57.17 -0.97 -24.14 16 12 O -0.99 -21.19 16.34 -57.17 -0.93 -22.12 16 13 N -0.99 -19.94 3.23 -123.05 -0.40 -20.34 16 14 C 0.09 1.50 10.69 59.85 0.64 2.14 16 15 C 0.23 5.36 4.16 -5.19 -0.02 5.34 16 16 C -0.53 -15.30 9.93 -34.44 -0.34 -15.64 16 17 H 0.08 2.45 8.06 -52.48 -0.42 2.02 16 18 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 19 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 20 Si 0.87 21.27 27.37 -169.99 -4.65 16.61 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.26 -5.94 6.69 56.52 0.38 -5.56 16 24 N -0.28 -3.73 12.58 33.67 0.42 -3.31 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.23 7.16 -51.93 -0.37 -0.14 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.17 0.89 7.27 -52.49 -0.38 0.51 16 33 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 34 H 0.09 1.18 7.79 -51.93 -0.40 0.78 16 35 H 0.08 0.90 8.06 -51.93 -0.42 0.49 16 36 H 0.41 5.80 8.65 -34.47 -0.30 5.50 16 37 H 0.04 0.52 8.06 -51.93 -0.42 0.10 16 38 H 0.08 1.37 8.07 -51.93 -0.42 0.96 16 39 H 0.07 1.10 7.05 -51.93 -0.37 0.74 16 40 H 0.03 0.72 7.51 -51.93 -0.39 0.33 16 41 H 0.03 0.74 6.66 -51.93 -0.35 0.39 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 363.88 15.07 5.48 5.48 Total: -1.00 -37.66 363.88 -8.15 -45.80 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.35 Total: 1.52 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -0.60 Total: -6.26 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: 0.54 Total: -71.75 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -1.91 Total: -46.26 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.65 Total: 16.61 kcal Atomic # 16 Polarization: 55.50 SS G_CDS: -0.65 Total: 54.85 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.66 -8.15 -45.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567085619.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.882 kcal (2) G-P(sol) polarization free energy of solvation -37.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds