Wall clock time and date at job start Tue Mar 31 2020 11:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47025 * 2 1 4 4 C 1.50708 * 109.46825 * 119.99791 * 2 1 3 5 5 N 1.31070 * 126.66345 * 300.16941 * 4 2 1 6 6 N 1.28835 * 107.99288 * 180.24765 * 5 4 2 7 7 N 1.28732 * 109.39829 * 359.74987 * 6 5 4 8 8 N 1.29029 * 108.80752 * 0.02562 * 7 6 5 9 9 C 1.46502 * 126.43503 * 179.97438 * 8 7 6 10 10 C 1.50692 * 109.47400 * 90.02094 * 9 8 7 11 11 O 1.21275 * 119.99933 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00271 * 179.97438 * 10 9 8 13 13 C 1.39465 * 120.00458 * 184.83583 * 12 10 9 14 14 C 1.38592 * 119.58296 * 175.08525 * 13 12 10 15 15 C 1.40810 * 118.79840 * 180.29902 * 14 13 12 16 16 C 1.41545 * 120.99918 * 179.70610 * 15 14 13 17 17 H 1.08004 * 119.99417 * 23.49194 * 16 15 14 18 18 C 1.40030 * 119.99912 * 203.49390 * 16 15 14 19 19 N 1.30731 * 120.00322 * 17.07161 * 18 16 15 20 20 Si 1.86807 * 119.99560 * 197.07019 * 18 16 15 21 21 H 1.48500 * 109.46936 * 90.00348 * 20 18 16 22 22 H 1.48502 * 109.46707 * 209.99750 * 20 18 16 23 23 H 1.48501 * 109.47106 * 329.99783 * 20 18 16 24 24 C 1.41177 * 118.00540 * 359.46959 * 15 14 13 25 25 C 1.37595 * 119.01356 * 0.53272 * 24 15 14 26 26 N 1.32079 * 121.10655 * 359.72799 * 25 24 15 27 27 H 1.09001 * 109.47101 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47302 * 300.00102 * 1 2 3 29 29 H 1.09000 * 109.47395 * 60.00098 * 1 2 3 30 30 H 1.08995 * 109.47145 * 239.99191 * 2 1 3 31 31 H 1.09004 * 109.46644 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.46574 * 299.99736 * 3 2 1 33 33 H 1.09000 * 109.47164 * 59.99813 * 3 2 1 34 34 H 1.09001 * 109.47157 * 330.01541 * 9 8 7 35 35 H 1.09007 * 109.46238 * 210.02010 * 9 8 7 36 36 H 0.97003 * 119.99539 * 4.83872 * 12 10 9 37 37 H 1.08005 * 120.60287 * 0.03170 * 14 13 12 38 38 H 0.96999 * 120.00203 * 179.97438 * 19 18 16 39 39 H 1.07998 * 120.49258 * 180.28704 * 24 15 14 40 40 H 1.08001 * 119.44399 * 179.74542 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 7 1.7950 -0.3802 2.4766 6 7 2.4015 -1.2267 3.2351 7 7 3.0153 -2.0915 2.5054 8 7 2.8095 -1.8087 1.2634 9 6 3.3289 -2.5422 0.1064 10 6 2.3501 -3.6184 -0.2869 11 8 1.3199 -3.7586 0.3374 12 7 2.6191 -4.4244 -1.3331 13 6 1.6702 -5.3529 -1.7601 14 6 1.9134 -6.1058 -2.8980 15 6 0.9413 -7.0339 -3.3179 16 6 1.1388 -7.8225 -4.4766 17 1 2.1394 -8.0148 -4.8348 18 6 0.0369 -8.3533 -5.1585 19 7 -1.1586 -7.8684 -4.9465 20 14 0.2751 -9.7543 -6.3709 21 1 0.1455 -11.0516 -5.6600 22 1 -0.7565 -9.6682 -7.4357 23 1 1.6255 -9.6567 -6.9810 24 6 -0.2340 -7.1580 -2.5457 25 6 -0.3864 -6.3667 -1.4304 26 7 0.5476 -5.5037 -1.0733 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 4.2852 -2.9973 0.3641 35 1 3.4670 -1.8541 -0.7277 36 1 3.4728 -4.3586 -1.7890 37 1 2.8301 -5.9798 -3.4551 38 1 -1.9218 -8.2358 -5.4191 39 1 -1.0038 -7.8607 -2.8284 40 1 -1.2846 -6.4529 -0.8369 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574498826.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:30 Heat of formation + Delta-G solvation = 92.969535 kcal Electronic energy + Delta-G solvation = -25640.119364 eV Core-core repulsion = 21877.869081 eV Total energy + Delta-G solvation = -3762.250283 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.30224 -41.41235 -39.72561 -37.19065 -36.58769 -36.20609 -35.44207 -32.64452 -32.57963 -31.20746 -29.45386 -28.12944 -27.93782 -25.49382 -24.94615 -23.75485 -23.44295 -21.88608 -21.35638 -19.84241 -19.04185 -18.70961 -17.65124 -17.46502 -16.92671 -16.76754 -16.45835 -16.08416 -15.87855 -15.59199 -15.22630 -14.71555 -14.70455 -14.30050 -14.22592 -14.20393 -13.72495 -13.24260 -13.15804 -13.10940 -12.96139 -12.81323 -12.70279 -12.48266 -12.32284 -12.29128 -12.08710 -11.91180 -11.86763 -11.56045 -11.25937 -11.20081 -11.00351 -10.02038 -9.66471 -8.94266 -8.69233 -6.58668 0.07171 0.66953 0.83125 0.92966 1.12735 1.41133 1.49025 1.54712 1.70885 1.94621 2.18608 2.77671 2.86380 3.14967 3.30534 3.59511 3.72346 3.88227 4.00069 4.04253 4.10858 4.18859 4.36692 4.63356 4.68163 4.75230 4.79116 4.80711 4.90040 4.91488 4.94720 4.99941 5.13197 5.21697 5.25095 5.35299 5.43159 5.55207 5.91584 6.04699 6.35729 6.54793 6.76256 6.79723 7.09821 7.47529 7.78431 8.22962 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.026214 B = 0.002761 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.865509 B =10137.979298 C =10360.934664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.012 4.012 3 C -0.136 4.136 4 C 0.210 3.790 5 N -0.328 5.328 6 N -0.106 5.106 7 N -0.103 5.103 8 N -0.292 5.292 9 C 0.095 3.905 10 C 0.484 3.516 11 O -0.517 6.517 12 N -0.634 5.634 13 C 0.347 3.653 14 C -0.305 4.305 15 C 0.117 3.883 16 C -0.479 4.479 17 H 0.091 0.909 18 C 0.038 3.962 19 N -0.812 5.812 20 Si 0.987 3.013 21 H -0.265 1.265 22 H -0.270 1.270 23 H -0.251 1.251 24 C -0.243 4.243 25 C 0.096 3.904 26 N -0.581 5.581 27 H 0.029 0.971 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.181 0.819 35 H 0.196 0.804 36 H 0.435 0.565 37 H 0.132 0.868 38 H 0.292 0.708 39 H 0.113 0.887 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.252 12.721 -1.738 16.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.034 4.034 3 C -0.194 4.194 4 C -0.068 4.068 5 N -0.177 5.177 6 N -0.100 5.100 7 N -0.089 5.089 8 N -0.093 5.093 9 C -0.029 4.029 10 C 0.268 3.732 11 O -0.389 6.389 12 N -0.283 5.283 13 C 0.119 3.881 14 C -0.331 4.331 15 C 0.109 3.891 16 C -0.510 4.510 17 H 0.109 0.891 18 C -0.180 4.180 19 N -0.437 5.437 20 Si 0.807 3.193 21 H -0.190 1.190 22 H -0.194 1.194 23 H -0.174 1.174 24 C -0.266 4.266 25 C -0.055 4.055 26 N -0.302 5.302 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.118 0.882 30 H 0.136 0.864 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.076 0.924 34 H 0.199 0.801 35 H 0.213 0.787 36 H 0.276 0.724 37 H 0.150 0.850 38 H 0.103 0.897 39 H 0.131 0.869 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.276 13.029 0.887 16.018 hybrid contribution -0.105 -1.605 -1.951 2.528 sum 9.170 11.424 -1.063 14.688 Atomic orbital electron populations 1.21812 0.92677 1.01435 1.04153 1.20110 0.97068 0.97409 0.88764 1.21836 1.01823 0.91565 1.04200 1.26747 0.93281 0.88490 0.98264 1.74840 1.20469 1.22690 0.99686 1.78530 1.07964 0.99889 1.23622 1.78773 1.20858 1.20669 0.88575 1.48086 1.34440 1.19958 1.06789 1.22493 0.98314 0.95280 0.86786 1.21202 0.87931 0.83452 0.80644 1.90915 1.27637 1.69332 1.50968 1.43090 1.18673 1.34370 1.32201 1.18186 0.88933 0.90176 0.90847 1.21384 1.04936 1.05050 1.01728 1.17980 0.90514 0.88989 0.91627 1.19918 0.95081 1.27666 1.08303 0.89050 1.26878 0.93831 0.98356 0.98905 1.69825 1.01271 1.36061 1.36573 0.85116 0.79802 0.77290 0.77057 1.18979 1.19414 1.17440 1.22171 1.01931 1.04965 0.97547 1.22050 0.96259 0.92352 0.94847 1.67284 1.03437 1.25261 1.34175 0.95180 0.92080 0.88192 0.86418 0.91195 0.88283 0.92413 0.80122 0.78727 0.72424 0.85041 0.89675 0.86894 0.85150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.18 71.98 0.66 -2.21 16 2 C -0.01 -0.20 3.26 -11.54 -0.04 -0.24 16 3 C -0.14 -1.54 9.18 71.98 0.66 -0.88 16 4 C 0.21 5.30 6.64 138.14 0.92 6.22 16 5 N -0.33 -10.47 12.36 -50.45 -0.62 -11.09 16 6 N -0.11 -3.75 13.43 37.01 0.50 -3.26 16 7 N -0.10 -3.29 13.29 37.02 0.49 -2.80 16 8 N -0.29 -7.29 2.83 -341.97 -0.97 -8.26 16 9 C 0.10 1.44 6.57 85.63 0.56 2.01 16 10 C 0.48 13.75 7.86 87.65 0.69 14.44 16 11 O -0.52 -21.72 14.68 -3.01 -0.04 -21.76 16 12 N -0.63 -17.70 5.39 -308.68 -1.66 -19.36 16 13 C 0.35 14.47 7.42 132.75 0.98 15.46 16 14 C -0.31 -13.14 9.73 22.98 0.22 -12.91 16 15 C 0.12 5.85 5.60 -21.11 -0.12 5.74 16 16 C -0.48 -23.22 9.12 23.52 0.21 -23.01 16 17 H 0.09 4.12 7.90 -2.91 -0.02 4.09 16 18 C 0.04 1.75 5.20 85.29 0.44 2.19 16 19 N -0.81 -39.52 10.93 21.84 0.24 -39.28 16 20 Si 0.99 34.42 29.59 68.60 2.03 36.45 16 21 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 22 H -0.27 -9.03 7.11 99.48 0.71 -8.33 16 23 H -0.25 -8.31 7.11 99.48 0.71 -7.60 16 24 C -0.24 -12.47 8.79 22.84 0.20 -12.27 16 25 C 0.10 4.75 11.15 84.50 0.94 5.69 16 26 N -0.58 -28.41 7.85 -193.54 -1.52 -29.93 16 27 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.12 1.34 6.84 -2.39 -0.02 1.32 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.18 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.20 0.72 7.12 -2.38 -0.02 0.71 16 36 H 0.44 7.16 8.70 -92.71 -0.81 6.35 16 37 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 38 H 0.29 12.82 8.29 -92.71 -0.77 12.05 16 39 H 0.11 6.00 6.20 -2.91 -0.02 5.98 16 40 H 0.13 6.01 8.06 -2.91 -0.02 5.98 16 Total: -1.00 -80.36 349.53 5.07 -75.29 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.29 Total: 23.77 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 6.34 Total: 0.22 kcal Atomic # 7 Polarization: -110.42 SS G_CDS: -3.55 Total: -113.97 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.04 Total: -21.76 kcal Atomic # 14 Polarization: 34.42 SS G_CDS: 2.03 Total: 36.45 kcal Total: -80.36 5.07 -75.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574498826.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.264 kcal (2) G-P(sol) polarization free energy of solvation -80.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds