Wall clock time and date at job start Tue Mar 31 2020 11:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 C 1.53003 * 109.46927 * 240.00208 * 2 1 3 5 5 C 1.50700 * 109.47008 * 59.99579 * 4 2 1 6 6 H 1.07997 * 120.00362 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99653 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00157 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00386 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47111 * 89.99562 * 9 7 5 11 11 H 1.48494 * 109.47201 * 210.00305 * 9 7 5 12 12 H 1.48506 * 109.46710 * 330.00066 * 9 7 5 13 13 C 1.52996 * 109.47146 * 120.00093 * 2 1 3 14 14 N 1.46498 * 109.47059 * 299.99645 * 13 2 1 15 15 C 1.38409 * 119.99772 * 179.72336 * 14 13 2 16 16 N 1.29838 * 124.85193 * 359.97438 * 15 14 13 17 17 C 1.31673 * 117.04428 * 179.76886 * 16 15 14 18 18 C 1.34825 * 114.30923 * 0.51274 * 17 16 15 19 19 C 1.47768 * 126.02475 * 179.77002 * 18 17 16 20 20 C 1.39606 * 120.14548 * 359.70316 * 19 18 17 21 21 C 1.37948 * 119.84807 * 179.71974 * 20 19 18 22 22 C 1.38360 * 120.15029 * 0.56328 * 21 20 19 23 23 C 1.38369 * 120.29919 * 359.71327 * 22 21 20 24 24 C 1.37952 * 120.14551 * 0.02562 * 23 22 21 25 25 S 1.70940 * 124.85073 * 180.27926 * 15 14 13 26 26 H 1.09003 * 109.46863 * 299.99777 * 1 2 3 27 27 H 1.09001 * 109.47172 * 59.99859 * 1 2 3 28 28 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47258 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46739 * 300.00411 * 3 2 1 31 31 H 1.08999 * 109.47407 * 59.99680 * 3 2 1 32 32 H 1.08990 * 109.47021 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.46620 * 300.00017 * 4 2 1 34 34 H 0.96996 * 120.00642 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47066 * 179.97438 * 13 2 1 36 36 H 1.08994 * 109.46974 * 60.00060 * 13 2 1 37 37 H 0.97001 * 120.00384 * 0.02562 * 14 13 2 38 38 H 1.08000 * 122.84550 * 180.20874 * 17 16 15 39 39 H 1.08009 * 120.07640 * 359.97438 * 20 19 18 40 40 H 1.08003 * 119.92545 * 180.29479 * 21 20 19 41 41 H 1.08000 * 119.85767 * 179.74200 * 22 21 20 42 42 H 1.07993 * 119.92800 * 180.02562 * 23 22 21 43 43 H 1.07995 * 120.08013 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 1.4331 0.1387 -4.8058 9 14 2.9451 -2.0003 -3.9035 10 1 2.0866 -3.2111 -3.9494 11 1 3.7374 -1.9074 -5.1560 12 1 3.8651 -2.0897 -2.7412 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0306 2.4454 15 6 1.8815 -0.5069 3.7024 16 7 2.6144 -1.5541 3.9304 17 6 2.8356 -1.8673 5.1901 18 6 2.2466 -1.0421 6.0789 19 6 2.3191 -1.1554 7.5504 20 6 3.0438 -2.1935 8.1388 21 6 3.1122 -2.2900 9.5132 22 6 2.4552 -1.3677 10.3082 23 6 1.7305 -0.3396 9.7315 24 6 1.6582 -0.2283 8.3584 25 16 1.3758 0.1954 5.1766 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9564 0.8899 32 1 3.1300 -0.7208 -1.2496 33 1 1.6767 -1.7489 -1.2493 34 1 1.6673 -0.1927 -5.6868 35 1 3.1301 -0.7216 1.2490 36 1 1.6768 -1.7489 1.2492 37 1 0.9939 0.7579 2.3564 38 1 3.4340 -2.7162 5.4862 39 1 3.5530 -2.9170 7.5194 40 1 3.6764 -3.0898 9.9698 41 1 2.5085 -1.4501 11.3837 42 1 1.2203 0.3772 10.3578 43 1 1.0926 0.5747 7.9095 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578394349.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:28 Heat of formation + Delta-G solvation = 56.147291 kcal Electronic energy + Delta-G solvation = -22596.225171 eV Core-core repulsion = 19346.378619 eV Total energy + Delta-G solvation = -3249.846552 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.93881 -39.06626 -37.80721 -34.60414 -32.52939 -31.97738 -31.21285 -28.33557 -27.58630 -26.62329 -26.53634 -24.48121 -22.98703 -22.54932 -22.00002 -19.48812 -19.14957 -17.89951 -17.07219 -16.84307 -16.24943 -15.69157 -15.19658 -14.77108 -14.72232 -14.49558 -14.05967 -14.02979 -13.66597 -13.48364 -13.15198 -13.10931 -12.79030 -12.55974 -12.31133 -11.79171 -11.63604 -11.40247 -11.21809 -11.06708 -11.04760 -10.71235 -10.57354 -10.50229 -9.99930 -9.79314 -9.71550 -9.50370 -9.45220 -9.22084 -9.04280 -8.82477 -8.56715 -7.42579 -6.07252 -4.04945 0.39372 1.01359 1.14662 1.58585 1.68561 2.97272 3.26243 3.29140 3.37358 3.40736 3.66812 4.42647 4.52298 4.59175 4.68488 4.71271 4.89273 5.16242 5.21378 5.24708 5.27649 5.45626 5.48352 5.57415 5.65846 5.76574 5.90605 6.03485 6.04452 6.09686 6.20867 6.24534 6.24925 6.31349 6.49683 6.53555 6.70226 6.77108 6.94655 6.96111 7.00774 7.11958 7.16537 7.31189 7.74514 8.00296 8.49109 8.96381 9.55046 11.05350 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.034767 B = 0.002325 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.162002 B =12039.276164 C =12648.048958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.063 4.063 3 C -0.130 4.130 4 C 0.000 4.000 5 C -0.512 4.512 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.903 5.903 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.139 3.861 14 N -0.677 5.677 15 C 0.331 3.669 16 N -0.553 5.553 17 C 0.117 3.883 18 C -0.254 4.254 19 C 0.021 3.979 20 C -0.116 4.116 21 C -0.110 4.110 22 C -0.133 4.133 23 C -0.110 4.110 24 C -0.125 4.125 25 S 0.092 5.908 26 H 0.030 0.970 27 H 0.074 0.926 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.030 0.970 32 H 0.019 0.981 33 H 0.014 0.986 34 H 0.263 0.737 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.414 0.586 38 H 0.173 0.827 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.852 -1.232 27.909 27.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.064 4.064 3 C -0.187 4.187 4 C -0.038 4.038 5 C -0.550 4.550 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.542 5.542 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.014 3.986 14 N -0.314 5.314 15 C -0.039 4.039 16 N -0.278 5.278 17 C -0.037 4.037 18 C -0.378 4.378 19 C 0.018 3.982 20 C -0.136 4.136 21 C -0.128 4.128 22 C -0.151 4.151 23 C -0.128 4.128 24 C -0.143 4.143 25 S 0.343 5.657 26 H 0.049 0.951 27 H 0.093 0.907 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.049 0.951 32 H 0.037 0.963 33 H 0.033 0.967 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.253 0.747 38 H 0.190 0.810 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.485 -0.711 27.242 27.255 hybrid contribution 0.876 -1.280 -0.122 1.556 sum 1.361 -1.991 27.120 27.227 Atomic orbital electron populations 1.21792 0.94742 1.01370 1.00802 1.20728 0.95875 0.95982 0.93821 1.21784 1.00568 0.95533 1.00801 1.19581 0.96320 0.95492 0.92443 1.21059 1.31939 1.13393 0.88587 0.90395 1.25006 0.95707 0.96777 0.95986 1.69898 1.45854 1.40527 0.97894 0.86851 0.81313 0.83879 0.77685 1.20362 1.21481 1.18983 1.21760 0.98967 0.95909 0.82006 1.44466 1.54563 1.31745 1.00642 1.23769 0.95014 0.93184 0.91962 1.66354 1.22776 1.17248 1.21438 1.21631 0.97747 0.98925 0.85350 1.23593 1.13507 1.03920 0.96758 1.17842 0.96777 0.95154 0.88439 1.21130 0.99708 0.97878 0.94910 1.21050 0.99328 0.99059 0.93407 1.21170 0.98550 0.95599 0.99805 1.21032 0.99003 0.98270 0.94500 1.21197 1.00365 0.99024 0.93757 1.83738 1.53064 1.31444 0.97414 0.95147 0.90705 0.93274 0.93263 0.90715 0.95131 0.96295 0.96745 0.92758 0.91576 0.91591 0.74703 0.81023 0.85760 0.85862 0.86162 0.85963 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 2 C -0.06 -1.13 0.54 -154.50 -0.08 -1.21 16 3 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 4 C 0.00 -0.01 3.11 -27.88 -0.09 -0.10 16 5 C -0.51 -13.50 8.20 -34.44 -0.28 -13.78 16 6 H 0.08 2.18 5.92 -52.49 -0.31 1.87 16 7 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -26.96 13.96 55.43 0.77 -26.18 16 9 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 13 C 0.14 2.22 4.83 -4.04 -0.02 2.20 16 14 N -0.68 -9.32 5.11 -62.33 -0.32 -9.64 16 15 C 0.33 4.63 8.07 -87.75 -0.71 3.92 16 16 N -0.55 -8.30 10.11 -14.98 -0.15 -8.45 16 17 C 0.12 1.48 10.84 -18.83 -0.20 1.28 16 18 C -0.25 -3.03 6.42 -36.90 -0.24 -3.27 16 19 C 0.02 0.22 5.87 -104.98 -0.62 -0.40 16 20 C -0.12 -1.06 9.56 -39.18 -0.37 -1.44 16 21 C -0.11 -0.87 10.03 -39.64 -0.40 -1.27 16 22 C -0.13 -1.01 10.04 -39.49 -0.40 -1.41 16 23 C -0.11 -0.90 10.03 -39.64 -0.40 -1.30 16 24 C -0.12 -1.21 9.62 -39.17 -0.38 -1.59 16 25 S 0.09 1.06 22.23 -107.50 -2.39 -1.33 16 26 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 27 H 0.07 1.43 6.62 -51.93 -0.34 1.09 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.43 6.62 -51.93 -0.34 1.08 16 31 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 32 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 33 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.41 5.03 6.29 -40.82 -0.26 4.77 16 38 H 0.17 1.71 6.99 -52.49 -0.37 1.34 16 39 H 0.12 0.94 6.85 -52.48 -0.36 0.58 16 40 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 41 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.12 1.07 7.35 -52.49 -0.39 0.69 16 LS Contribution 358.54 15.07 5.40 5.40 Total: -1.00 -30.13 358.54 -11.01 -41.14 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.97 Total: 2.86 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -3.68 Total: -20.39 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.30 Total: -44.28 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.39 Total: -1.33 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.13 -11.01 -41.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578394349.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.284 kcal (2) G-P(sol) polarization free energy of solvation -30.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds