Wall clock time and date at job start Tue Mar 31 2020 11:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 C 1.53003 * 109.46927 * 240.00208 * 2 1 3 5 5 C 1.50700 * 109.47008 * 59.99579 * 4 2 1 6 6 H 1.07997 * 120.00362 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99653 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00157 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00386 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47111 * 89.99562 * 9 7 5 11 11 H 1.48494 * 109.47201 * 210.00305 * 9 7 5 12 12 H 1.48506 * 109.46710 * 330.00066 * 9 7 5 13 13 C 1.52996 * 109.47146 * 120.00093 * 2 1 3 14 14 N 1.46498 * 109.47059 * 299.99645 * 13 2 1 15 15 C 1.38409 * 119.99772 * 179.72336 * 14 13 2 16 16 N 1.29838 * 124.85193 * 359.97438 * 15 14 13 17 17 C 1.31673 * 117.04428 * 179.76886 * 16 15 14 18 18 C 1.34825 * 114.30923 * 0.51274 * 17 16 15 19 19 C 1.47768 * 126.02475 * 179.77002 * 18 17 16 20 20 C 1.39606 * 120.14548 * 359.70316 * 19 18 17 21 21 C 1.37948 * 119.84807 * 179.71974 * 20 19 18 22 22 C 1.38360 * 120.15029 * 0.56328 * 21 20 19 23 23 C 1.38369 * 120.29919 * 359.71327 * 22 21 20 24 24 C 1.37952 * 120.14551 * 0.02562 * 23 22 21 25 25 S 1.70940 * 124.85073 * 180.27926 * 15 14 13 26 26 H 1.09003 * 109.46863 * 299.99777 * 1 2 3 27 27 H 1.09001 * 109.47172 * 59.99859 * 1 2 3 28 28 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47258 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46739 * 300.00411 * 3 2 1 31 31 H 1.08999 * 109.47407 * 59.99680 * 3 2 1 32 32 H 1.08990 * 109.47021 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.46620 * 300.00017 * 4 2 1 34 34 H 0.96996 * 120.00642 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47066 * 179.97438 * 13 2 1 36 36 H 1.08994 * 109.46974 * 60.00060 * 13 2 1 37 37 H 0.97001 * 120.00384 * 0.02562 * 14 13 2 38 38 H 1.08000 * 122.84550 * 180.20874 * 17 16 15 39 39 H 1.08009 * 120.07640 * 359.97438 * 20 19 18 40 40 H 1.08003 * 119.92545 * 180.29479 * 21 20 19 41 41 H 1.08000 * 119.85767 * 179.74200 * 22 21 20 42 42 H 1.07993 * 119.92800 * 180.02562 * 23 22 21 43 43 H 1.07995 * 120.08013 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 1.4331 0.1387 -4.8058 9 14 2.9451 -2.0003 -3.9035 10 1 2.0866 -3.2111 -3.9494 11 1 3.7374 -1.9074 -5.1560 12 1 3.8651 -2.0897 -2.7412 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0306 2.4454 15 6 1.8815 -0.5069 3.7024 16 7 2.6144 -1.5541 3.9304 17 6 2.8356 -1.8673 5.1901 18 6 2.2466 -1.0421 6.0789 19 6 2.3191 -1.1554 7.5504 20 6 3.0438 -2.1935 8.1388 21 6 3.1122 -2.2900 9.5132 22 6 2.4552 -1.3677 10.3082 23 6 1.7305 -0.3396 9.7315 24 6 1.6582 -0.2283 8.3584 25 16 1.3758 0.1954 5.1766 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9564 0.8899 32 1 3.1300 -0.7208 -1.2496 33 1 1.6767 -1.7489 -1.2493 34 1 1.6673 -0.1927 -5.6868 35 1 3.1301 -0.7216 1.2490 36 1 1.6768 -1.7489 1.2492 37 1 0.9939 0.7579 2.3564 38 1 3.4340 -2.7162 5.4862 39 1 3.5530 -2.9170 7.5194 40 1 3.6764 -3.0898 9.9698 41 1 2.5085 -1.4501 11.3837 42 1 1.2203 0.3772 10.3578 43 1 1.0926 0.5747 7.9095 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578394349.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:27 Heat of formation + Delta-G solvation = 40.923341 kcal Electronic energy + Delta-G solvation = -22596.885331 eV Core-core repulsion = 19346.378619 eV Total energy + Delta-G solvation = -3250.506712 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.87359 -39.85852 -39.09115 -35.88990 -34.29154 -32.99893 -31.83715 -29.92159 -28.75805 -28.02854 -27.75011 -25.55677 -24.32765 -23.41248 -22.97577 -20.56729 -20.17661 -19.17640 -18.89575 -17.75872 -17.24867 -16.53901 -16.30971 -16.25576 -15.57337 -15.52684 -15.34099 -15.24614 -15.10324 -14.27744 -14.24742 -14.22037 -14.17097 -13.91051 -13.68122 -12.99675 -12.85066 -12.69814 -12.59659 -12.32792 -12.25810 -12.18769 -11.78669 -11.75569 -11.68137 -11.34646 -11.24572 -10.93288 -10.71174 -10.53758 -10.45292 -9.85084 -9.64760 -8.36732 -8.22902 -6.23314 -0.45143 0.05662 0.51742 0.75766 0.80368 1.35851 1.38454 1.48477 2.03230 2.24033 2.38597 2.99557 3.12343 3.61265 3.80941 3.90545 4.03338 4.04062 4.11721 4.14544 4.33032 4.42310 4.59757 4.60618 4.69206 4.72767 4.78712 4.91352 4.93135 5.03015 5.06160 5.10869 5.18903 5.27567 5.35833 5.38826 5.52284 5.57816 5.61918 5.64356 5.66218 5.72945 5.85306 6.09009 6.15994 6.37228 6.83541 7.03759 7.39320 8.92593 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.034767 B = 0.002325 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.162002 B =12039.276164 C =12648.048958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.058 4.058 3 C -0.124 4.124 4 C -0.001 4.001 5 C -0.502 4.502 6 H 0.051 0.949 7 C 0.003 3.997 8 N -0.951 5.951 9 Si 0.936 3.064 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.250 1.250 13 C 0.158 3.842 14 N -0.677 5.677 15 C 0.306 3.694 16 N -0.579 5.579 17 C 0.094 3.906 18 C -0.247 4.247 19 C -0.008 4.008 20 C -0.123 4.123 21 C -0.115 4.115 22 C -0.130 4.130 23 C -0.117 4.117 24 C -0.136 4.136 25 S 0.134 5.866 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.016 0.984 33 H 0.015 0.985 34 H 0.262 0.738 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.421 0.579 38 H 0.191 0.809 39 H 0.135 0.865 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.370 -1.995 31.615 31.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.059 4.059 3 C -0.182 4.182 4 C -0.039 4.039 5 C -0.540 4.540 6 H 0.069 0.931 7 C -0.193 4.193 8 N -0.593 5.593 9 Si 0.761 3.239 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.174 1.174 13 C 0.032 3.968 14 N -0.317 5.317 15 C -0.064 4.064 16 N -0.305 5.305 17 C -0.058 4.058 18 C -0.370 4.370 19 C -0.011 4.011 20 C -0.143 4.143 21 C -0.133 4.133 22 C -0.148 4.148 23 C -0.134 4.134 24 C -0.155 4.155 25 S 0.386 5.614 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.035 0.965 33 H 0.033 0.967 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.262 0.738 38 H 0.207 0.793 39 H 0.153 0.847 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.161 0.839 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.002 -1.474 30.997 31.048 hybrid contribution 0.676 -0.991 -1.016 1.572 sum 1.678 -2.465 29.980 30.128 Atomic orbital electron populations 1.21712 0.94087 1.01309 1.01073 1.20572 0.96346 0.96087 0.92871 1.21704 1.00360 0.95022 1.01077 1.19543 0.96022 0.95490 0.92872 1.21361 1.30270 1.12285 0.90125 0.93090 1.25863 0.97508 1.00008 0.95898 1.70043 1.48123 1.42664 0.98432 0.85873 0.79839 0.80268 0.77958 1.19707 1.21539 1.17383 1.21298 0.98221 0.95277 0.82036 1.44152 1.55344 1.32101 1.00058 1.23884 0.96011 0.93900 0.92593 1.66340 1.23259 1.17975 1.22903 1.21890 0.98990 1.00126 0.84793 1.23939 1.12151 1.03306 0.97652 1.17988 0.98658 0.96655 0.87792 1.21377 0.99376 0.97648 0.95864 1.21396 0.99248 0.99718 0.92954 1.21569 0.97249 0.94759 1.01251 1.21341 0.99056 0.98939 0.94113 1.21356 1.00511 0.99020 0.94634 1.83536 1.51999 1.30430 0.95439 0.91743 0.93518 0.93494 0.93518 0.93522 0.91723 0.96542 0.96695 0.92872 0.92486 0.92444 0.73837 0.79271 0.84735 0.83510 0.83616 0.83863 0.86150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.16 8.05 71.99 0.58 -3.58 16 2 C -0.06 -2.04 0.54 -52.18 -0.03 -2.07 16 3 C -0.12 -4.16 8.05 71.98 0.58 -3.58 16 4 C 0.00 -0.06 3.11 29.85 0.09 0.04 16 5 C -0.50 -27.17 8.20 25.60 0.21 -26.96 16 6 H 0.05 2.98 5.92 -2.91 -0.02 2.96 16 7 C 0.00 0.20 5.47 84.65 0.46 0.66 16 8 N -0.95 -58.64 13.96 21.45 0.30 -58.34 16 9 Si 0.94 44.22 27.47 68.60 1.88 46.10 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 12 H -0.25 -11.10 6.54 99.48 0.65 -10.44 16 13 C 0.16 4.90 4.83 86.38 0.42 5.32 16 14 N -0.68 -17.65 5.11 -351.11 -1.79 -19.44 16 15 C 0.31 8.17 8.07 179.35 1.45 9.62 16 16 N -0.58 -16.88 10.11 -201.32 -2.04 -18.92 16 17 C 0.09 2.28 10.84 83.93 0.91 3.19 16 18 C -0.25 -5.55 6.42 24.01 0.15 -5.39 16 19 C -0.01 -0.16 5.87 -20.10 -0.12 -0.28 16 20 C -0.12 -1.99 9.56 22.53 0.22 -1.78 16 21 C -0.12 -1.47 10.03 22.23 0.22 -1.25 16 22 C -0.13 -1.55 10.04 22.33 0.22 -1.33 16 23 C -0.12 -1.59 10.03 22.23 0.22 -1.37 16 24 C -0.14 -2.39 9.62 22.53 0.22 -2.17 16 25 S 0.13 2.87 22.23 -56.49 -1.26 1.61 16 26 H 0.06 1.69 6.86 -2.39 -0.02 1.67 16 27 H 0.05 1.82 6.62 -2.39 -0.02 1.80 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.05 1.82 6.62 -2.39 -0.02 1.80 16 31 H 0.06 1.70 6.86 -2.39 -0.02 1.68 16 32 H 0.02 0.74 7.20 -2.39 -0.02 0.72 16 33 H 0.01 0.66 7.57 -2.39 -0.02 0.64 16 34 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 35 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.42 9.33 6.29 -92.71 -0.58 8.75 16 38 H 0.19 3.57 6.99 -2.91 -0.02 3.55 16 39 H 0.13 1.78 6.85 -2.91 -0.02 1.76 16 40 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 41 H 0.15 0.97 8.06 -2.91 -0.02 0.94 16 42 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 43 H 0.12 1.96 7.35 -2.91 -0.02 1.94 16 Total: -1.00 -66.44 358.54 3.29 -63.14 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.38 Total: 16.78 kcal Atomic # 6 Polarization: -36.75 SS G_CDS: 5.81 Total: -30.94 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -3.53 Total: -96.70 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.88 Total: 46.10 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -1.26 Total: 1.61 kcal Total: -66.44 3.29 -63.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578394349.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.068 kcal (2) G-P(sol) polarization free energy of solvation -66.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds