Wall clock time and date at job start Tue Mar 31 2020 11:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.30013 * 127.33362 * 2 1 4 4 O 1.20655 * 112.29783 * 180.27346 * 3 2 1 5 5 C 1.33502 * 113.15950 * 359.72653 * 4 3 2 6 6 C 1.50694 * 126.82924 * 180.02562 * 5 4 3 7 7 F 1.39898 * 109.47651 * 29.99475 * 6 5 4 8 8 F 1.39899 * 109.47200 * 150.00002 * 6 5 4 9 9 C 1.37362 * 106.33648 * 0.02562 * 5 4 3 10 10 C 1.47394 * 128.55994 * 179.97438 * 9 5 4 11 11 O 1.21610 * 120.00204 * 90.00527 * 10 9 5 12 12 N 1.34784 * 120.00019 * 270.00022 * 10 9 5 13 13 C 1.46493 * 119.99864 * 179.72895 * 12 10 9 14 14 C 1.53001 * 109.47084 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.46836 * 299.99612 * 14 13 12 16 16 C 1.53000 * 109.47371 * 59.99504 * 14 13 12 17 17 C 1.53003 * 109.47182 * 179.97438 * 14 13 12 18 18 C 1.50700 * 109.46808 * 179.97438 * 17 14 13 19 19 H 1.07996 * 120.00289 * 0.02562 * 18 17 14 20 20 C 1.37880 * 120.00080 * 179.97438 * 18 17 14 21 21 N 1.31519 * 119.99724 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 120.00211 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47283 * 90.00145 * 22 20 18 24 24 H 1.48503 * 109.47123 * 210.00236 * 22 20 18 25 25 H 1.48500 * 109.47547 * 329.99942 * 22 20 18 26 26 H 1.09006 * 109.46835 * 270.15533 * 1 2 3 27 27 H 1.08997 * 109.46673 * 30.15132 * 1 2 3 28 28 H 1.09001 * 109.46722 * 150.15760 * 1 2 3 29 29 H 1.08999 * 109.46811 * 269.99406 * 6 5 4 30 30 H 0.97000 * 119.99339 * 0.02562 * 12 10 9 31 31 H 1.09007 * 109.47196 * 299.99538 * 13 12 10 32 32 H 1.09006 * 109.47678 * 59.99732 * 13 12 10 33 33 H 1.09003 * 109.47126 * 60.00153 * 15 14 13 34 34 H 1.08996 * 109.47277 * 180.02562 * 15 14 13 35 35 H 1.09001 * 109.47339 * 300.00075 * 15 14 13 36 36 H 1.08998 * 109.46763 * 60.00533 * 16 14 13 37 37 H 1.08996 * 109.47041 * 180.02562 * 16 14 13 38 38 H 1.08994 * 109.47083 * 300.00462 * 16 14 13 39 39 H 1.08993 * 109.47057 * 299.99535 * 17 14 13 40 40 H 1.09001 * 109.47095 * 59.99863 * 17 14 13 41 41 H 0.96993 * 120.00031 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2956 1.0338 0.0000 4 8 3.4608 0.7208 -0.0053 5 6 3.6495 -0.6009 -0.0040 6 6 4.9712 -1.3246 -0.0089 7 9 5.9320 -0.5457 0.6448 8 9 4.8346 -2.5494 0.6533 9 6 2.3992 -1.1696 0.0027 10 6 2.0401 -2.5992 0.0062 11 8 1.8969 -3.1876 1.0607 12 7 1.8704 -3.2542 -1.1595 13 6 1.5193 -4.6765 -1.1560 14 6 1.3876 -5.1728 -2.5973 15 6 0.2921 -4.3789 -3.3118 16 6 2.7177 -4.9775 -3.3276 17 6 1.0216 -6.6584 -2.5937 18 6 0.8912 -7.1470 -4.0133 19 1 1.0535 -6.4662 -4.8358 20 6 0.5656 -8.4635 -4.2621 21 7 0.3684 -9.2927 -3.2605 22 14 0.4047 -9.0693 -6.0217 23 1 1.7215 -9.5644 -6.4973 24 1 -0.5881 -10.1724 -6.0766 25 1 -0.0475 -7.9529 -6.8903 26 1 -0.3633 0.0028 1.0277 27 1 -0.3632 0.8886 -0.5162 28 1 -0.3633 -0.8914 -0.5114 29 1 5.2851 -1.5009 -1.0377 30 1 1.9849 -2.7849 -2.0006 31 1 2.3000 -5.2422 -0.6473 32 1 0.5719 -4.8157 -0.6353 33 1 0.5532 -3.3206 -3.3144 34 1 0.1978 -4.7327 -4.3384 35 1 -0.6556 -4.5180 -2.7915 36 1 3.4981 -5.5431 -2.8186 37 1 2.6237 -5.3307 -4.3545 38 1 2.9789 -3.9193 -3.3302 39 1 1.8023 -7.2237 -2.0848 40 1 0.0740 -6.7979 -2.0733 41 1 0.1390 -10.2187 -3.4355 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588770897.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:25 Heat of formation + Delta-G solvation = -90.806588 kcal Electronic energy + Delta-G solvation = -27040.397788 eV Core-core repulsion = 22787.196437 eV Total energy + Delta-G solvation = -4253.201351 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.52800 -47.55029 -45.36008 -39.73363 -37.24430 -35.00841 -33.80850 -33.28581 -32.11840 -29.21767 -27.77740 -27.12728 -26.61801 -26.43377 -24.46754 -22.79026 -21.24360 -20.58772 -19.04383 -18.65637 -18.10990 -17.60772 -17.53614 -17.21137 -16.41557 -16.03420 -15.57981 -14.98199 -14.56649 -14.35283 -14.11270 -13.86778 -13.79258 -13.73383 -13.69555 -13.31483 -13.21686 -13.12556 -12.86585 -12.29357 -12.12213 -11.99662 -11.73813 -11.25638 -11.08392 -10.91590 -10.71668 -10.57249 -10.45454 -10.32471 -10.29980 -10.06153 -9.97556 -9.28391 -9.00359 -8.97399 -8.41081 -6.05141 -4.06863 0.59221 1.45002 1.91123 2.28297 3.04199 3.23098 3.27226 3.34799 3.35955 3.52437 3.71180 4.11515 4.22139 4.32497 4.40783 4.68602 4.72100 5.09291 5.13581 5.25506 5.30352 5.37710 5.50690 5.63260 5.65217 6.04721 6.09573 6.14891 6.26762 6.35085 6.53333 6.60853 6.95476 6.97979 7.02268 7.43364 7.57484 7.66294 7.68648 7.92877 8.07765 8.34224 8.97811 9.56704 11.06248 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.020374 B = 0.003118 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.988330 B = 8976.944403 C = 9503.682030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.056 3.944 3 N -0.340 5.340 4 O 0.125 5.875 5 C -0.080 4.080 6 C 0.364 3.636 7 F -0.183 7.183 8 F -0.169 7.169 9 C -0.190 4.190 10 C 0.585 3.415 11 O -0.513 6.513 12 N -0.706 5.706 13 C 0.127 3.873 14 C -0.072 4.072 15 C -0.128 4.128 16 C -0.128 4.128 17 C 0.036 3.964 18 C -0.513 4.513 19 H 0.059 0.941 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.889 3.111 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.150 0.850 30 H 0.400 0.600 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.028 0.972 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.027 0.973 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.731 19.062 3.573 20.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 N -0.042 5.042 4 O 0.058 5.942 5 C -0.144 4.144 6 C 0.309 3.691 7 F -0.164 7.164 8 F -0.150 7.150 9 C -0.197 4.197 10 C 0.367 3.633 11 O -0.388 6.388 12 N -0.358 5.358 13 C 0.004 3.996 14 C -0.073 4.073 15 C -0.185 4.185 16 C -0.185 4.185 17 C -0.001 4.001 18 C -0.551 4.551 19 H 0.077 0.923 20 C -0.144 4.144 21 N -0.533 5.533 22 Si 0.717 3.283 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.167 0.833 30 H 0.236 0.764 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.046 0.954 39 H 0.038 0.962 40 H 0.037 0.963 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.374 19.723 4.412 20.913 hybrid contribution -0.091 -0.998 -1.147 1.523 sum 5.283 18.726 3.265 19.729 Atomic orbital electron populations 1.20308 0.84318 1.04681 1.04435 1.24884 0.99002 0.85781 1.00879 1.73622 0.88952 1.23072 1.18582 1.84604 1.21628 1.20743 1.67222 1.25143 0.97154 0.85828 1.06320 1.19585 0.79665 0.75045 0.94848 1.93082 1.64351 1.74998 1.83964 1.93175 1.95630 1.42702 1.83499 1.22282 0.91811 0.96537 1.09117 1.16820 0.78287 0.83312 0.84902 1.90869 1.49745 1.67225 1.31008 1.46174 1.69538 1.12652 1.07405 1.21782 1.00891 0.77770 0.99110 1.20927 0.95477 1.00097 0.90782 1.21775 0.98110 0.96472 1.02169 1.21777 0.96533 0.98104 1.02131 1.19090 0.96926 0.86515 0.97571 1.21160 1.47157 0.94701 0.92104 0.92256 1.25008 0.95575 0.97093 0.96742 1.69958 1.47939 1.04872 1.30506 0.86652 0.77844 0.78567 0.85263 1.20749 1.21317 1.19947 0.89179 0.89497 0.89209 0.83282 0.76394 0.91197 0.91270 0.95346 0.91275 0.93235 0.93152 0.91259 0.95419 0.96234 0.96265 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.49 36.01 0.38 -0.29 16 2 C 0.06 0.62 7.59 -79.76 -0.61 0.02 16 3 N -0.34 -3.96 12.01 34.78 0.42 -3.55 16 4 O 0.12 1.37 11.06 18.63 0.21 1.58 16 5 C -0.08 -0.84 7.13 -34.63 -0.25 -1.09 16 6 C 0.36 3.18 5.81 36.00 0.21 3.39 16 7 F -0.18 -1.75 17.32 2.25 0.04 -1.71 16 8 F -0.17 -2.06 16.11 2.25 0.04 -2.02 16 9 C -0.19 -2.30 6.19 -102.90 -0.64 -2.94 16 10 C 0.58 8.38 6.59 -12.53 -0.08 8.30 16 11 O -0.51 -9.42 17.11 5.27 0.09 -9.33 16 12 N -0.71 -9.29 4.95 -61.39 -0.30 -9.59 16 13 C 0.13 2.04 4.56 -4.04 -0.02 2.02 16 14 C -0.07 -1.26 0.54 -154.51 -0.08 -1.35 16 15 C -0.13 -2.05 8.05 37.16 0.30 -1.75 16 16 C -0.13 -2.04 8.05 37.16 0.30 -1.74 16 17 C 0.04 0.85 4.04 -27.88 -0.11 0.73 16 18 C -0.51 -13.06 7.65 -34.44 -0.26 -13.32 16 19 H 0.06 1.45 5.68 -52.49 -0.30 1.15 16 20 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 21 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 22 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.15 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.40 4.39 6.15 -40.82 -0.25 4.14 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.03 0.36 6.87 -51.93 -0.36 0.00 16 34 H 0.07 1.22 6.62 -51.93 -0.34 0.87 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.21 6.62 -51.93 -0.34 0.86 16 38 H 0.03 0.34 6.86 -51.93 -0.36 -0.01 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 353.37 15.07 5.33 5.33 Total: -1.00 -31.44 353.37 -4.75 -36.19 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -5.31 Total: -0.92 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -0.96 Total: -6.58 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.85 Total: -38.10 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.30 Total: -7.76 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.08 Total: -3.73 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.44 -4.75 -36.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588770897.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.618 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds