Wall clock time and date at job start Tue Mar 31 2020 11:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.30013 * 127.33362 * 2 1 4 4 O 1.20655 * 112.29783 * 180.27346 * 3 2 1 5 5 C 1.33502 * 113.15950 * 359.72653 * 4 3 2 6 6 C 1.50694 * 126.82924 * 180.02562 * 5 4 3 7 7 F 1.39898 * 109.47651 * 29.99475 * 6 5 4 8 8 F 1.39899 * 109.47200 * 150.00002 * 6 5 4 9 9 C 1.37362 * 106.33648 * 0.02562 * 5 4 3 10 10 C 1.47394 * 128.55994 * 179.97438 * 9 5 4 11 11 O 1.21610 * 120.00204 * 90.00527 * 10 9 5 12 12 N 1.34784 * 120.00019 * 270.00022 * 10 9 5 13 13 C 1.46493 * 119.99864 * 179.72895 * 12 10 9 14 14 C 1.53001 * 109.47084 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.46836 * 299.99612 * 14 13 12 16 16 C 1.53000 * 109.47371 * 59.99504 * 14 13 12 17 17 C 1.53003 * 109.47182 * 179.97438 * 14 13 12 18 18 C 1.50700 * 109.46808 * 179.97438 * 17 14 13 19 19 H 1.07996 * 120.00289 * 0.02562 * 18 17 14 20 20 C 1.37880 * 120.00080 * 179.97438 * 18 17 14 21 21 N 1.31519 * 119.99724 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 120.00211 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47283 * 90.00145 * 22 20 18 24 24 H 1.48503 * 109.47123 * 210.00236 * 22 20 18 25 25 H 1.48500 * 109.47547 * 329.99942 * 22 20 18 26 26 H 1.09006 * 109.46835 * 270.15533 * 1 2 3 27 27 H 1.08997 * 109.46673 * 30.15132 * 1 2 3 28 28 H 1.09001 * 109.46722 * 150.15760 * 1 2 3 29 29 H 1.08999 * 109.46811 * 269.99406 * 6 5 4 30 30 H 0.97000 * 119.99339 * 0.02562 * 12 10 9 31 31 H 1.09007 * 109.47196 * 299.99538 * 13 12 10 32 32 H 1.09006 * 109.47678 * 59.99732 * 13 12 10 33 33 H 1.09003 * 109.47126 * 60.00153 * 15 14 13 34 34 H 1.08996 * 109.47277 * 180.02562 * 15 14 13 35 35 H 1.09001 * 109.47339 * 300.00075 * 15 14 13 36 36 H 1.08998 * 109.46763 * 60.00533 * 16 14 13 37 37 H 1.08996 * 109.47041 * 180.02562 * 16 14 13 38 38 H 1.08994 * 109.47083 * 300.00462 * 16 14 13 39 39 H 1.08993 * 109.47057 * 299.99535 * 17 14 13 40 40 H 1.09001 * 109.47095 * 59.99863 * 17 14 13 41 41 H 0.96993 * 120.00031 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2956 1.0338 0.0000 4 8 3.4608 0.7208 -0.0053 5 6 3.6495 -0.6009 -0.0040 6 6 4.9712 -1.3246 -0.0089 7 9 5.9320 -0.5457 0.6448 8 9 4.8346 -2.5494 0.6533 9 6 2.3992 -1.1696 0.0027 10 6 2.0401 -2.5992 0.0062 11 8 1.8969 -3.1876 1.0607 12 7 1.8704 -3.2542 -1.1595 13 6 1.5193 -4.6765 -1.1560 14 6 1.3876 -5.1728 -2.5973 15 6 0.2921 -4.3789 -3.3118 16 6 2.7177 -4.9775 -3.3276 17 6 1.0216 -6.6584 -2.5937 18 6 0.8912 -7.1470 -4.0133 19 1 1.0535 -6.4662 -4.8358 20 6 0.5656 -8.4635 -4.2621 21 7 0.3684 -9.2927 -3.2605 22 14 0.4047 -9.0693 -6.0217 23 1 1.7215 -9.5644 -6.4973 24 1 -0.5881 -10.1724 -6.0766 25 1 -0.0475 -7.9529 -6.8903 26 1 -0.3633 0.0028 1.0277 27 1 -0.3632 0.8886 -0.5162 28 1 -0.3633 -0.8914 -0.5114 29 1 5.2851 -1.5009 -1.0377 30 1 1.9849 -2.7849 -2.0006 31 1 2.3000 -5.2422 -0.6473 32 1 0.5719 -4.8157 -0.6353 33 1 0.5532 -3.3206 -3.3144 34 1 0.1978 -4.7327 -4.3384 35 1 -0.6556 -4.5180 -2.7915 36 1 3.4981 -5.5431 -2.8186 37 1 2.6237 -5.3307 -4.3545 38 1 2.9789 -3.9193 -3.3302 39 1 1.8023 -7.2237 -2.0848 40 1 0.0740 -6.7979 -2.0733 41 1 0.1390 -10.2187 -3.4355 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588770897.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:24 Heat of formation + Delta-G solvation = -110.438517 kcal Electronic energy + Delta-G solvation = -27041.249093 eV Core-core repulsion = 22787.196437 eV Total energy + Delta-G solvation = -4254.052656 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.29044 -48.32696 -46.21779 -40.96403 -38.68576 -35.87539 -35.29262 -34.30493 -33.78584 -29.95890 -29.21403 -28.49050 -27.93283 -27.53317 -25.69990 -24.42745 -22.16671 -21.60804 -20.22904 -19.48958 -19.22168 -18.39954 -18.35383 -18.32100 -18.18259 -17.19719 -16.72541 -16.43144 -16.16840 -15.32854 -15.14786 -15.05829 -14.77319 -14.61956 -14.60335 -14.39346 -14.32304 -14.19821 -13.90938 -13.82696 -13.73084 -12.86619 -12.73976 -12.71102 -12.60220 -12.53465 -12.30384 -12.21601 -11.97070 -11.62874 -11.51665 -11.15708 -11.02939 -10.95256 -10.83213 -10.48649 -10.22835 -8.11758 -6.19018 -0.26461 0.59866 1.06492 1.20611 1.44518 1.45176 1.54847 1.95288 2.46401 2.47979 2.86664 2.89750 3.23388 3.30066 3.41911 3.64291 3.80289 3.88950 3.98258 4.10106 4.23792 4.30972 4.52698 4.63475 4.69638 4.73406 4.79480 4.98064 5.01715 5.07807 5.16112 5.30512 5.46166 5.54755 5.56421 5.59919 5.83409 5.93034 6.29686 6.36755 6.82729 6.96648 6.97546 7.48901 9.00654 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.020374 B = 0.003118 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.988330 B = 8976.944403 C = 9503.682030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.060 3.940 3 N -0.353 5.353 4 O 0.125 5.875 5 C -0.062 4.062 6 C 0.359 3.641 7 F -0.187 7.187 8 F -0.191 7.191 9 C -0.213 4.213 10 C 0.595 3.405 11 O -0.558 6.558 12 N -0.689 5.689 13 C 0.140 3.860 14 C -0.064 4.064 15 C -0.123 4.123 16 C -0.124 4.124 17 C 0.039 3.961 18 C -0.512 4.512 19 H 0.073 0.927 20 C -0.004 4.004 21 N -0.938 5.938 22 Si 0.955 3.045 23 H -0.277 1.277 24 H -0.292 1.292 25 H -0.259 1.259 26 H 0.094 0.906 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.204 0.796 30 H 0.416 0.584 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.039 0.961 36 H 0.040 0.960 37 H 0.055 0.945 38 H 0.071 0.929 39 H -0.012 1.012 40 H -0.013 1.013 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.381 21.411 1.715 22.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 N -0.057 5.057 4 O 0.060 5.940 5 C -0.128 4.128 6 C 0.305 3.695 7 F -0.168 7.168 8 F -0.172 7.172 9 C -0.220 4.220 10 C 0.379 3.621 11 O -0.437 6.437 12 N -0.341 5.341 13 C 0.017 3.983 14 C -0.064 4.064 15 C -0.181 4.181 16 C -0.182 4.182 17 C 0.002 3.998 18 C -0.550 4.550 19 H 0.091 0.909 20 C -0.201 4.201 21 N -0.580 5.580 22 Si 0.781 3.219 23 H -0.203 1.203 24 H -0.218 1.218 25 H -0.183 1.183 26 H 0.113 0.887 27 H 0.123 0.877 28 H 0.112 0.888 29 H 0.220 0.780 30 H 0.254 0.746 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.006 0.994 40 H 0.006 0.994 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.044 22.119 2.514 23.068 hybrid contribution -0.276 -1.683 -0.504 1.778 sum 5.768 20.437 2.010 21.330 Atomic orbital electron populations 1.20462 0.82695 1.05770 1.05072 1.25257 1.00024 0.85093 0.99788 1.73630 0.89168 1.23329 1.19551 1.84605 1.21524 1.20770 1.67081 1.25482 0.97530 0.85607 1.04158 1.20288 0.78702 0.73734 0.96820 1.93073 1.64312 1.75082 1.84358 1.93137 1.95693 1.44139 1.84248 1.22008 0.92931 0.95342 1.11760 1.16959 0.77027 0.83982 0.84144 1.90854 1.51689 1.68498 1.32626 1.45880 1.68927 1.11253 1.08064 1.21379 0.99780 0.79379 0.97797 1.20715 0.97228 0.96353 0.92144 1.21713 0.97057 0.98594 1.00685 1.21725 0.94974 1.00821 1.00643 1.18972 0.94304 0.90540 0.96001 1.21598 1.45295 0.94778 0.93322 0.90872 1.25907 0.95720 0.97688 1.00750 1.70114 1.49846 1.05128 1.32871 0.85592 0.77701 0.78122 0.80506 1.20253 1.21803 1.18312 0.88727 0.87656 0.88846 0.77984 0.74586 0.92744 0.92667 0.91194 0.92618 0.94151 0.94059 0.92556 0.91039 0.99398 0.99416 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 10.49 71.24 0.75 -0.46 16 2 C 0.06 1.21 7.59 45.16 0.34 1.55 16 3 N -0.35 -7.48 12.01 -44.79 -0.54 -8.02 16 4 O 0.12 2.46 11.06 76.91 0.85 3.31 16 5 C -0.06 -1.17 7.13 25.48 0.18 -0.99 16 6 C 0.36 5.31 5.81 71.23 0.41 5.72 16 7 F -0.19 -3.16 17.32 44.97 0.78 -2.38 16 8 F -0.19 -4.38 16.11 44.97 0.72 -3.65 16 9 C -0.21 -4.74 6.19 -18.75 -0.12 -4.86 16 10 C 0.59 16.30 6.59 86.65 0.57 16.87 16 11 O -0.56 -20.54 17.11 -4.06 -0.07 -20.61 16 12 N -0.69 -16.74 4.95 -466.39 -2.31 -19.05 16 13 C 0.14 4.47 4.56 86.38 0.39 4.87 16 14 C -0.06 -2.18 0.54 -52.18 -0.03 -2.21 16 15 C -0.12 -3.70 8.05 71.98 0.58 -3.12 16 16 C -0.12 -3.69 8.05 71.98 0.58 -3.11 16 17 C 0.04 1.89 4.04 29.85 0.12 2.01 16 18 C -0.51 -26.20 7.65 25.60 0.20 -26.00 16 19 H 0.07 3.48 5.68 -2.91 -0.02 3.47 16 20 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 21 N -0.94 -55.65 13.29 21.45 0.28 -55.37 16 22 Si 0.95 42.28 29.54 68.60 2.03 44.30 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 25 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 26 H 0.09 1.31 8.14 -2.38 -0.02 1.30 16 27 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.20 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.42 7.54 6.15 -92.71 -0.57 6.97 16 31 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.07 1.51 6.87 -2.39 -0.02 1.50 16 34 H 0.05 1.84 6.62 -2.39 -0.02 1.82 16 35 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.83 6.62 -2.39 -0.02 1.82 16 38 H 0.07 1.49 6.86 -2.39 -0.02 1.47 16 39 H -0.01 -0.67 8.14 -2.39 -0.02 -0.68 16 40 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 41 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -70.86 353.37 6.70 -64.17 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 0.51 Total: 6.78 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: 4.44 Total: -9.48 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -2.56 Total: -82.44 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.78 Total: -17.30 kcal Atomic # 9 Polarization: -7.54 SS G_CDS: 1.50 Total: -6.04 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -70.86 6.70 -64.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588770897.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.271 kcal (2) G-P(sol) polarization free energy of solvation -70.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds