Wall clock time and date at job start Tue Mar 31 2020 11:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 119.99897 * 2 1 4 4 N 1.46494 * 109.47248 * 124.99584 * 3 2 1 5 5 C 1.46493 * 120.00444 * 270.27463 * 4 3 2 6 6 C 1.50702 * 109.47427 * 269.72511 * 5 4 3 7 7 H 1.07999 * 119.99972 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99945 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00264 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99887 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47089 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46706 * 120.00063 * 10 8 6 13 13 H 1.48497 * 109.47206 * 240.00218 * 10 8 6 14 14 C 1.34784 * 119.99635 * 90.00174 * 4 3 2 15 15 O 1.21283 * 119.99649 * 180.02562 * 14 4 3 16 16 C 1.50694 * 119.99988 * 0.02562 * 14 4 3 17 17 C 1.50698 * 109.47166 * 179.97438 * 16 14 4 18 18 C 1.34239 * 126.49894 * 265.02943 * 17 16 14 19 19 N 1.36807 * 109.93415 * 179.97438 * 18 17 16 20 20 H 0.97001 * 125.07058 * 180.02562 * 19 18 17 21 21 C 1.37815 * 109.86645 * 359.97438 * 19 18 17 22 22 C 1.39095 * 133.39805 * 180.02562 * 21 19 18 23 23 C 1.37723 * 119.94849 * 179.30704 * 22 21 19 24 24 C 1.39034 * 120.64614 * 0.56863 * 23 22 21 25 25 F 1.35102 * 119.82806 * 179.61696 * 24 23 22 26 26 C 1.37788 * 120.33741 * 359.63418 * 24 23 22 27 27 C 1.39677 * 119.62759 * 0.02562 * 26 24 23 28 28 H 1.07995 * 120.00099 * 0.02562 * 1 2 3 29 29 H 1.08007 * 119.99796 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.99959 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47073 * 4.99678 * 3 2 1 32 32 H 1.09004 * 109.47082 * 245.00302 * 3 2 1 33 33 H 1.09002 * 109.47192 * 29.72648 * 5 4 3 34 34 H 1.08996 * 109.47342 * 149.72358 * 5 4 3 35 35 H 0.96991 * 120.00123 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.47224 * 299.99701 * 16 14 4 37 37 H 1.09002 * 109.47054 * 60.00213 * 16 14 4 38 38 H 1.08003 * 125.03238 * 359.91840 * 18 17 16 39 39 H 1.08000 * 120.02482 * 359.95453 * 22 21 19 40 40 H 1.08001 * 119.67043 * 180.20353 * 23 22 21 41 41 H 1.07997 * 120.18773 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5569 1.8594 2.4264 6 6 2.8430 3.3377 2.4891 7 1 3.3036 3.8347 1.6482 8 6 2.5156 4.0559 3.6196 9 7 1.9542 3.4508 4.6435 10 14 2.8696 5.8885 3.6970 11 1 3.4997 6.3251 2.4252 12 1 1.5988 6.6299 3.8992 13 1 3.7909 6.1674 4.8277 14 6 4.2497 0.8662 0.9824 15 8 5.0196 0.8880 1.9192 16 6 4.6972 0.3185 -0.3482 17 6 6.1318 -0.1323 -0.2491 18 6 7.2183 0.5835 -0.5796 19 7 8.3486 -0.1535 -0.3543 20 1 9.2548 0.1518 -0.5175 21 6 8.0081 -1.3940 0.1402 22 6 8.7501 -2.5042 0.5294 23 6 8.1099 -3.6254 1.0088 24 6 6.7230 -3.6659 1.0980 25 9 6.1116 -4.7771 1.5634 26 6 5.9689 -2.5785 0.7138 27 6 6.6053 -1.4322 0.2324 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 1.4865 1.6911 2.5450 34 1 3.0954 1.3510 3.2262 35 1 1.7243 3.9560 5.4389 36 1 4.0682 -0.5283 -0.6227 37 1 4.6126 1.0954 -1.1080 38 1 7.2024 1.5916 -0.9668 39 1 9.8280 -2.4832 0.4656 40 1 8.6906 -4.4838 1.3128 41 1 4.8917 -2.6124 0.7845 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590038181.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:47 Heat of formation + Delta-G solvation = -22.388112 kcal Electronic energy + Delta-G solvation = -25670.518641 eV Core-core repulsion = 21851.053362 eV Total energy + Delta-G solvation = -3819.465279 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.78627 -42.23709 -40.48654 -37.56609 -37.10723 -35.15034 -33.99328 -33.60608 -31.45906 -29.88676 -29.72122 -27.88820 -26.77302 -24.68703 -24.04185 -22.89915 -21.34020 -20.73344 -19.68463 -18.89465 -18.60711 -18.23398 -17.74580 -17.23362 -17.07618 -16.53303 -16.35669 -16.14117 -16.01254 -15.53138 -15.15707 -14.86716 -14.55875 -14.32035 -14.08513 -14.02793 -13.86206 -13.71011 -13.48082 -13.18355 -12.93582 -12.85687 -12.60772 -12.55917 -12.24399 -12.21291 -12.13474 -11.75604 -11.61424 -10.79401 -10.63653 -10.41154 -10.27805 -9.38491 -9.10825 -8.60389 -8.19736 -6.34756 0.02412 0.42711 1.35268 1.37631 1.39492 1.51513 1.64879 1.97227 2.22839 2.37922 2.61855 2.79905 3.09786 3.33771 3.67643 3.85152 3.93859 4.04067 4.11935 4.19060 4.32067 4.32594 4.42059 4.53412 4.64718 4.71878 4.79042 4.86520 4.90766 5.06365 5.09083 5.10047 5.23084 5.26922 5.33011 5.57029 5.67528 5.73591 5.75100 5.80245 6.00905 6.10110 6.10991 6.72683 6.74509 6.88276 7.32079 7.60535 8.87682 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012895 B = 0.003740 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.907382 B = 7484.123454 C = 8259.336840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.183 4.183 3 C 0.133 3.867 4 N -0.602 5.602 5 C 0.265 3.735 6 C -0.537 4.537 7 H 0.058 0.942 8 C 0.004 3.996 9 N -0.932 5.932 10 Si 0.969 3.031 11 H -0.262 1.262 12 H -0.271 1.271 13 H -0.284 1.284 14 C 0.497 3.503 15 O -0.590 6.590 16 C -0.052 4.052 17 C -0.183 4.183 18 C 0.083 3.917 19 N -0.577 5.577 20 H 0.435 0.565 21 C 0.074 3.926 22 C -0.089 4.089 23 C -0.138 4.138 24 C 0.050 3.950 25 F -0.153 7.153 26 C -0.127 4.127 27 C -0.092 4.092 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.016 0.984 34 H -0.010 1.010 35 H 0.265 0.735 36 H 0.110 0.890 37 H 0.130 0.870 38 H 0.204 0.796 39 H 0.167 0.833 40 H 0.163 0.837 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.478 -9.545 -17.179 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.202 4.202 3 C 0.011 3.989 4 N -0.333 5.333 5 C 0.144 3.856 6 C -0.575 4.575 7 H 0.076 0.924 8 C -0.194 4.194 9 N -0.572 5.572 10 Si 0.793 3.207 11 H -0.186 1.186 12 H -0.196 1.196 13 H -0.210 1.210 14 C 0.287 3.713 15 O -0.470 6.470 16 C -0.092 4.092 17 C -0.190 4.190 18 C -0.044 4.044 19 N -0.182 5.182 20 H 0.276 0.724 21 C -0.034 4.034 22 C -0.109 4.109 23 C -0.158 4.158 24 C 0.030 3.970 25 F -0.132 7.132 26 C -0.147 4.147 27 C -0.097 4.097 28 H 0.117 0.883 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.094 0.906 32 H 0.131 0.869 33 H 0.034 0.966 34 H 0.008 0.992 35 H 0.074 0.926 36 H 0.128 0.872 37 H 0.148 0.852 38 H 0.220 0.780 39 H 0.185 0.815 40 H 0.181 0.819 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.908 -9.455 -16.544 21.956 hybrid contribution -0.188 0.698 0.998 1.232 sum 10.720 -8.757 -15.546 20.815 Atomic orbital electron populations 1.24031 0.95635 1.02735 0.98721 1.23377 0.96793 0.98543 1.01524 1.20836 0.92773 0.95899 0.89354 1.48228 1.11892 1.60398 1.12754 1.18628 0.93438 0.92864 0.80711 1.21758 1.40054 0.94331 1.01396 0.92381 1.25903 0.94748 1.03844 0.94904 1.70083 1.43113 1.38113 1.05910 0.85349 0.78124 0.78942 0.78272 1.18589 1.19590 1.21034 1.21448 0.81172 0.77363 0.91348 1.90641 1.54086 1.57905 1.44377 1.20008 0.92693 1.02731 0.93729 1.19813 0.94731 0.93767 1.10701 1.22095 0.84060 0.97604 1.00666 1.41640 1.09394 1.10808 1.56314 0.72424 1.18491 0.93475 0.88813 1.02634 1.20196 1.00825 0.89663 1.00253 1.21017 0.91493 1.00555 1.02737 1.17565 0.91955 0.83645 1.03858 1.91438 1.83861 1.50947 1.86971 1.20465 1.00123 0.92293 1.01818 1.19020 0.93282 0.94417 1.02974 0.88261 0.86883 0.87074 0.90593 0.86869 0.96606 0.99223 0.92569 0.87204 0.85219 0.77974 0.81511 0.81931 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.30 14.32 67.78 0.97 -3.33 16 2 C -0.18 -5.01 9.74 25.64 0.25 -4.76 16 3 C 0.13 4.12 5.65 85.63 0.48 4.61 16 4 N -0.60 -25.73 2.44 -830.53 -2.03 -27.75 16 5 C 0.27 14.69 5.16 85.64 0.44 15.14 16 6 C -0.54 -31.15 9.39 25.60 0.24 -30.91 16 7 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 8 C 0.00 0.26 5.46 84.65 0.46 0.72 16 9 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 10 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 11 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 13 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 14 C 0.50 20.81 7.66 87.65 0.67 21.48 16 15 O -0.59 -31.40 15.62 -3.04 -0.05 -31.45 16 16 C -0.05 -1.44 4.78 29.10 0.14 -1.30 16 17 C -0.18 -5.25 4.81 -18.63 -0.09 -5.34 16 18 C 0.08 1.85 11.73 83.00 0.97 2.82 16 19 N -0.58 -11.05 6.07 -187.58 -1.14 -12.18 16 20 H 0.44 4.74 8.96 -92.71 -0.83 3.91 16 21 C 0.07 1.80 7.27 38.99 0.28 2.09 16 22 C -0.09 -1.76 10.06 22.35 0.22 -1.53 16 23 C -0.14 -3.05 9.99 22.34 0.22 -2.83 16 24 C 0.05 1.43 7.29 22.35 0.16 1.60 16 25 F -0.15 -4.57 17.26 44.97 0.78 -3.80 16 26 C -0.13 -4.03 10.07 22.51 0.23 -3.80 16 27 C -0.09 -2.81 6.35 -20.20 -0.13 -2.93 16 28 H 0.10 2.44 7.84 -2.91 -0.02 2.41 16 29 H 0.11 2.35 8.06 -2.91 -0.02 2.33 16 30 H 0.11 2.88 7.83 -2.91 -0.02 2.85 16 31 H 0.08 2.49 7.73 -2.39 -0.02 2.47 16 32 H 0.11 2.58 6.44 -2.38 -0.02 2.56 16 33 H 0.02 0.91 8.07 -2.39 -0.02 0.89 16 34 H -0.01 -0.67 7.42 -2.39 -0.02 -0.69 16 35 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 36 H 0.11 2.66 7.78 -2.39 -0.02 2.64 16 37 H 0.13 2.65 7.40 -2.39 -0.02 2.64 16 38 H 0.20 3.06 8.06 -2.91 -0.02 3.03 16 39 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 41 H 0.12 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -82.84 361.16 5.64 -77.21 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.23 Total: 16.51 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 5.54 Total: -8.29 kcal Atomic # 7 Polarization: -94.39 SS G_CDS: -2.88 Total: -97.27 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.05 Total: -31.45 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 0.78 Total: -3.80 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -82.84 5.64 -77.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590038181.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.819 kcal (2) G-P(sol) polarization free energy of solvation -82.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds