Wall clock time and date at job start Tue Mar 31 2020 11:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00137 * 2 1 4 4 N 1.46499 * 109.47161 * 125.00117 * 3 2 1 5 5 C 1.46504 * 120.00152 * 270.00368 * 4 3 2 6 6 C 1.50708 * 109.46903 * 269.99880 * 5 4 3 7 7 H 1.07999 * 120.00005 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99776 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00240 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99772 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47349 * 59.99886 * 10 8 6 12 12 H 1.48494 * 109.47292 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.47211 * 299.99880 * 10 8 6 14 14 C 1.34779 * 120.00097 * 89.99950 * 4 3 2 15 15 O 1.21275 * 120.00225 * 180.02562 * 14 4 3 16 16 C 1.50699 * 119.99845 * 0.02562 * 14 4 3 17 17 N 1.46496 * 109.47479 * 179.97438 * 16 14 4 18 18 C 1.36904 * 125.06686 * 264.97776 * 17 16 14 19 19 C 1.34211 * 109.92377 * 180.02562 * 18 17 16 20 20 C 1.46531 * 107.00051 * 0.24283 * 19 18 17 21 21 C 1.39626 * 133.98888 * 179.71974 * 20 19 18 22 22 C 1.36608 * 119.79956 * 180.02562 * 21 20 19 23 23 C 1.39031 * 120.50348 * 0.02562 * 22 21 20 24 24 F 1.35095 * 119.69223 * 180.02562 * 23 22 21 25 25 C 1.37947 * 120.60717 * 359.60254 * 23 22 21 26 26 C 1.37688 * 125.06781 * 84.99217 * 17 16 14 27 27 H 1.07997 * 119.99763 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.00211 * 179.97438 * 1 2 3 29 29 H 1.07997 * 119.99763 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47082 * 5.00225 * 3 2 1 31 31 H 1.08997 * 109.47488 * 245.00065 * 3 2 1 32 32 H 1.08994 * 109.47009 * 29.99413 * 5 4 3 33 33 H 1.08999 * 109.47229 * 150.00094 * 5 4 3 34 34 H 0.96992 * 119.99690 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.47437 * 59.99804 * 16 14 4 36 36 H 1.09001 * 109.46983 * 300.00074 * 16 14 4 37 37 H 1.07997 * 125.03602 * 0.05119 * 18 17 16 38 38 H 1.08002 * 126.49620 * 179.97438 * 19 18 17 39 39 H 1.08005 * 120.10241 * 0.02562 * 21 20 19 40 40 H 1.08005 * 119.74675 * 180.02562 * 22 21 20 41 41 H 1.08002 * 120.11324 * 179.89355 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8648 2.4249 6 6 2.8444 3.3435 2.4805 7 1 3.3041 3.8368 1.6369 8 6 2.5195 4.0664 3.6087 9 7 1.9601 3.4655 4.6362 10 14 2.8740 5.8991 3.6779 11 1 2.1382 6.5872 2.5868 12 1 2.4331 6.4395 4.9889 13 1 4.3320 6.1280 3.5126 14 6 4.2497 0.8660 0.9824 15 8 5.0197 0.8878 1.9191 16 6 4.6972 0.3182 -0.3483 17 7 6.0918 -0.1200 -0.2520 18 6 7.1795 0.6355 -0.5990 19 6 8.3066 -0.0623 -0.3897 20 6 7.9086 -1.3738 0.1286 21 6 8.6106 -2.5147 0.5222 22 6 7.9290 -3.6093 0.9733 23 6 6.5405 -3.5966 1.0431 24 9 5.8830 -4.6880 1.4923 25 6 5.8285 -2.4768 0.6663 26 6 6.5040 -1.3533 0.2006 27 1 -0.5399 0.9353 0.0004 28 1 -0.5400 -0.9352 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 1.4889 1.6965 2.5460 33 1 3.0991 1.3602 3.2260 34 1 1.7320 3.9740 5.4300 35 1 4.6126 1.0952 -1.1082 36 1 4.0680 -0.5284 -0.6228 37 1 7.1368 1.6438 -0.9837 38 1 9.3155 0.2769 -0.5730 39 1 9.6893 -2.5319 0.4703 40 1 8.4729 -4.4913 1.2779 41 1 4.7499 -2.4763 0.7222 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592800873.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:50 Heat of formation + Delta-G solvation = -6.967449 kcal Electronic energy + Delta-G solvation = -25860.186043 eV Core-core repulsion = 22041.389454 eV Total energy + Delta-G solvation = -3818.796589 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.89531 -42.40528 -40.62855 -37.79921 -37.24467 -35.19281 -33.85047 -33.70973 -31.74516 -29.99339 -29.42456 -27.84348 -26.89611 -24.85020 -23.82678 -22.73171 -21.54672 -21.18018 -20.14611 -18.70457 -18.58866 -18.17608 -18.09627 -17.18804 -17.14433 -16.61788 -16.46383 -16.26773 -15.82983 -15.77426 -15.23525 -15.02221 -14.54615 -14.45818 -14.33210 -14.13456 -14.05319 -13.66068 -13.40801 -13.18564 -13.04229 -12.85959 -12.80373 -12.60838 -12.28683 -12.26726 -12.22693 -11.98072 -11.73118 -10.91603 -10.67299 -10.58932 -10.36222 -9.56282 -9.14830 -8.64770 -8.25224 -6.40475 -0.00959 0.46961 1.24992 1.35367 1.39538 1.46630 1.55702 1.65578 1.84828 2.31466 2.46039 2.77482 3.05221 3.27492 3.51622 3.62501 3.73908 3.91967 3.96720 4.05820 4.10641 4.20207 4.23014 4.37180 4.45027 4.52832 4.80800 4.82791 4.94407 4.97348 5.01813 5.08358 5.16812 5.17372 5.39063 5.45266 5.68043 5.71094 5.76247 5.80465 5.89609 6.01278 6.15251 6.26658 6.61760 6.70225 7.21723 7.36112 8.82182 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.003848 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.769241 B = 7274.051301 C = 8050.068619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.189 4.189 3 C 0.129 3.871 4 N -0.593 5.593 5 C 0.266 3.734 6 C -0.542 4.542 7 H 0.058 0.942 8 C 0.007 3.993 9 N -0.930 5.930 10 Si 0.968 3.032 11 H -0.257 1.257 12 H -0.281 1.281 13 H -0.277 1.277 14 C 0.478 3.522 15 O -0.583 6.583 16 C 0.099 3.901 17 N -0.471 5.471 18 C 0.054 3.946 19 C -0.204 4.204 20 C -0.137 4.137 21 C -0.038 4.038 22 C -0.183 4.183 23 C 0.097 3.903 24 F -0.147 7.147 25 C -0.180 4.180 26 C 0.107 3.893 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.021 0.979 33 H -0.010 1.010 34 H 0.267 0.733 35 H 0.158 0.842 36 H 0.134 0.866 37 H 0.197 0.803 38 H 0.177 0.823 39 H 0.165 0.835 40 H 0.159 0.841 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.083 -9.440 -16.968 20.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.208 4.208 3 C 0.008 3.992 4 N -0.323 5.323 5 C 0.145 3.855 6 C -0.581 4.581 7 H 0.077 0.923 8 C -0.192 4.192 9 N -0.569 5.569 10 Si 0.792 3.208 11 H -0.181 1.181 12 H -0.206 1.206 13 H -0.203 1.203 14 C 0.265 3.735 15 O -0.463 6.463 16 C -0.026 4.026 17 N -0.153 5.153 18 C -0.070 4.070 19 C -0.228 4.228 20 C -0.142 4.142 21 C -0.056 4.056 22 C -0.202 4.202 23 C 0.077 3.923 24 F -0.126 7.126 25 C -0.202 4.202 26 C 0.000 4.000 27 H 0.119 0.881 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.100 0.900 31 H 0.133 0.867 32 H 0.039 0.961 33 H 0.008 0.992 34 H 0.075 0.925 35 H 0.175 0.825 36 H 0.152 0.848 37 H 0.214 0.786 38 H 0.194 0.806 39 H 0.183 0.817 40 H 0.177 0.823 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.048 -9.281 -16.330 20.062 hybrid contribution -0.612 0.682 1.071 1.410 sum 6.437 -8.599 -15.258 18.660 Atomic orbital electron populations 1.24066 0.95646 1.02910 0.97844 1.23331 0.96882 0.98286 1.02300 1.20938 0.92955 0.96415 0.88915 1.48215 1.11340 1.59436 1.13329 1.18676 0.93740 0.92828 0.80251 1.21663 1.40713 0.94166 1.01542 0.92329 1.25881 0.94599 1.03855 0.94836 1.70057 1.42782 1.38297 1.05808 0.85464 0.78525 0.78894 0.77924 1.18112 1.20646 1.20283 1.21591 0.82068 0.78517 0.91301 1.90717 1.54002 1.57720 1.43828 1.21890 0.81441 1.04099 0.95187 1.43663 1.06009 1.11063 1.54564 1.22449 0.84801 0.98127 1.01594 1.21997 0.99224 0.92397 1.09163 1.19705 0.91601 0.97035 1.05869 1.20466 1.01133 0.89566 0.94480 1.20858 0.91189 1.01820 1.06369 1.17397 0.91096 0.83040 1.00762 1.91452 1.81750 1.52329 1.87080 1.19882 1.00087 0.92322 1.07876 1.18015 0.94250 0.87084 1.00610 0.88110 0.86795 0.86983 0.89994 0.86669 0.96074 0.99181 0.92451 0.82467 0.84827 0.78641 0.80585 0.81717 0.82334 0.85958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.73 14.32 67.78 0.97 -2.76 16 2 C -0.19 -4.61 9.74 25.64 0.25 -4.36 16 3 C 0.13 3.59 5.65 85.63 0.48 4.08 16 4 N -0.59 -23.73 2.44 -830.51 -2.03 -25.76 16 5 C 0.27 14.21 5.16 85.63 0.44 14.65 16 6 C -0.54 -30.59 9.39 25.60 0.24 -30.35 16 7 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 8 C 0.01 0.42 5.46 84.65 0.46 0.88 16 9 N -0.93 -56.40 13.29 21.45 0.28 -56.12 16 10 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 11 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 14 C 0.48 18.91 7.74 87.66 0.68 19.59 16 15 O -0.58 -30.32 16.00 -3.01 -0.05 -30.37 16 16 C 0.10 2.53 5.03 85.63 0.43 2.96 16 17 N -0.47 -13.46 2.27 -519.97 -1.18 -14.64 16 18 C 0.05 1.32 11.28 82.98 0.94 2.25 16 19 C -0.20 -4.82 11.08 23.51 0.26 -4.56 16 20 C -0.14 -3.79 6.37 -20.19 -0.13 -3.92 16 21 C -0.04 -0.87 10.05 22.22 0.22 -0.65 16 22 C -0.18 -4.33 9.95 22.08 0.22 -4.11 16 23 C 0.10 2.82 7.28 22.39 0.16 2.99 16 24 F -0.15 -4.34 17.25 44.97 0.78 -3.57 16 25 C -0.18 -5.64 9.97 22.41 0.22 -5.42 16 26 C 0.11 3.35 6.80 39.03 0.27 3.62 16 27 H 0.10 2.23 7.84 -2.91 -0.02 2.21 16 28 H 0.11 2.12 8.06 -2.91 -0.02 2.10 16 29 H 0.11 2.54 7.83 -2.91 -0.02 2.52 16 30 H 0.08 2.44 7.72 -2.39 -0.02 2.43 16 31 H 0.12 2.17 6.44 -2.39 -0.02 2.16 16 32 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 33 H -0.01 -0.63 7.42 -2.39 -0.02 -0.65 16 34 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.16 2.68 7.38 -2.39 -0.02 2.67 16 36 H 0.13 2.74 7.78 -2.39 -0.02 2.72 16 37 H 0.20 3.43 8.06 -2.91 -0.02 3.41 16 38 H 0.18 2.97 8.06 -2.91 -0.02 2.94 16 39 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 40 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 41 H 0.12 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -80.01 362.32 6.99 -73.02 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 1.03 Total: 16.28 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 6.12 Total: -5.10 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -2.92 Total: -96.52 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.05 Total: -30.37 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.78 Total: -3.57 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -80.01 6.99 -73.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592800873.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.052 kcal (2) G-P(sol) polarization free energy of solvation -80.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds