Wall clock time and date at job start Tue Mar 31 2020 11:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47034 * 2 1 4 4 N 1.31220 * 118.51137 * 269.73001 * 3 2 1 5 5 C 1.34144 * 120.47897 * 179.72603 * 4 3 2 6 6 C 1.40137 * 121.98730 * 180.23026 * 5 4 3 7 7 C 1.36327 * 119.58294 * 180.27927 * 6 5 4 8 8 C 1.39203 * 121.02770 * 0.03336 * 7 6 5 9 9 C 1.36408 * 120.88823 * 359.97438 * 8 7 6 10 10 C 1.39885 * 119.50424 * 359.97438 * 9 8 7 11 11 C 1.41675 * 122.12180 * 179.97438 * 10 9 8 12 12 S 1.76203 * 120.92100 * 0.05282 * 11 10 9 13 13 C 1.80998 * 100.00457 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.46902 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.47121 * 299.99693 * 14 13 12 16 16 C 1.52998 * 109.47032 * 60.00097 * 14 13 12 17 17 C 1.50697 * 109.46677 * 180.02562 * 14 13 12 18 18 H 1.08004 * 120.00612 * 1.31835 * 17 14 13 19 19 C 1.37883 * 119.99876 * 181.32288 * 17 14 13 20 20 N 1.31517 * 119.99862 * 194.00574 * 19 17 14 21 21 Si 1.86798 * 119.99950 * 14.00738 * 19 17 14 22 22 H 1.48501 * 109.47379 * 84.54320 * 21 19 17 23 23 H 1.48496 * 109.47100 * 204.54411 * 21 19 17 24 24 H 1.48501 * 109.46899 * 324.54610 * 21 19 17 25 25 N 1.32296 * 118.50780 * 90.00001 * 3 2 1 26 26 H 1.08999 * 109.47289 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47519 * 299.99983 * 1 2 3 28 28 H 1.09009 * 109.47209 * 59.99910 * 1 2 3 29 29 H 1.08999 * 109.47089 * 120.00035 * 2 1 3 30 30 H 1.09003 * 109.46805 * 240.00096 * 2 1 3 31 31 H 1.08001 * 120.21214 * 0.26521 * 6 5 4 32 32 H 1.08005 * 119.48923 * 180.02562 * 7 6 5 33 33 H 1.07997 * 119.55324 * 180.02562 * 8 7 6 34 34 H 1.07998 * 120.24910 * 179.97438 * 9 8 7 35 35 H 1.09000 * 109.46917 * 299.99939 * 13 12 11 36 36 H 1.09000 * 109.46610 * 59.99888 * 13 12 11 37 37 H 1.09007 * 109.46881 * 69.42018 * 15 14 13 38 38 H 1.09003 * 109.46834 * 189.40877 * 15 14 13 39 39 H 1.08989 * 109.47623 * 309.41671 * 15 14 13 40 40 H 1.09003 * 109.46755 * 60.00138 * 16 14 13 41 41 H 1.09005 * 109.46769 * 179.97438 * 16 14 13 42 42 H 1.08998 * 109.47245 * 299.99641 * 16 14 13 43 43 H 0.96998 * 119.99236 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2462 2.0095 -1.1530 5 6 2.6880 3.2753 -1.1991 6 6 2.9224 3.9360 -2.4125 7 6 3.3770 5.2212 -2.4022 8 6 3.6133 5.8891 -1.2039 9 6 3.3957 5.2752 -0.0053 10 6 2.9282 3.9570 0.0187 11 6 2.6839 3.2663 1.2314 12 16 2.9593 4.0447 2.7880 13 6 2.4826 2.6993 3.9010 14 6 2.6447 3.1563 5.3521 15 6 4.1048 3.5359 5.6071 16 6 1.7498 4.3707 5.6074 17 6 2.2484 2.0359 6.2787 18 1 1.9346 1.0852 5.8734 19 6 2.2863 2.2244 7.6441 20 7 2.2124 1.1901 8.4530 21 14 2.4427 3.9489 8.3448 22 1 1.0977 4.5727 8.4295 23 1 3.0425 3.8795 9.7015 24 1 3.3122 4.7656 7.4603 25 7 2.2427 2.0161 1.1626 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 2.7443 3.4302 -3.3500 32 1 3.5568 5.7291 -3.3382 33 1 3.9730 6.9072 -1.2234 34 1 3.5828 5.8030 0.9182 35 1 1.4425 2.4285 3.7190 36 1 3.1204 1.8343 3.7193 37 1 4.3434 4.4490 5.0615 38 1 4.2565 3.7002 6.6739 39 1 4.7546 2.7295 5.2676 40 1 0.7097 4.1001 5.4258 41 1 1.8651 4.6959 6.6414 42 1 2.0369 5.1809 4.9372 43 1 2.2387 1.3229 9.4135 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594905621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:17 Heat of formation + Delta-G solvation = 47.400330 kcal Electronic energy + Delta-G solvation = -23689.090216 eV Core-core repulsion = 20438.864367 eV Total energy + Delta-G solvation = -3250.225849 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.28474 -38.91619 -38.29172 -35.39229 -34.43833 -34.00168 -32.21487 -30.72055 -28.76101 -28.06908 -27.04331 -26.41559 -25.65552 -23.56340 -23.07206 -21.14002 -19.48875 -19.14988 -18.30189 -18.09180 -17.38953 -16.59068 -16.43590 -15.87978 -15.48560 -15.42340 -15.19534 -14.95901 -14.86327 -14.83575 -14.66097 -13.89051 -13.81390 -13.60789 -13.40243 -13.32399 -12.91952 -12.77428 -12.69868 -12.51058 -12.27767 -12.19056 -12.09702 -12.00389 -11.96133 -11.79284 -11.59514 -10.93254 -10.61787 -10.45966 -10.30476 -10.28582 -9.72781 -8.69622 -8.32074 -6.33389 -0.93908 -0.32017 0.29006 0.74332 1.09265 1.34994 1.36272 1.48395 1.90358 2.32725 2.89503 2.94510 3.03698 3.16928 3.45679 3.62180 3.95759 4.00286 4.11132 4.14899 4.20804 4.28165 4.30227 4.36179 4.39985 4.59419 4.69113 4.73908 4.84182 4.85506 4.88329 4.91047 4.92213 5.00525 5.05172 5.17298 5.18373 5.20640 5.32672 5.38827 5.42731 5.63417 5.68570 5.71247 5.94634 6.28437 6.69710 7.01177 7.30995 8.84815 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016867 B = 0.003967 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.604221 B = 7056.929030 C = 8411.070122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.054 4.054 3 C 0.323 3.677 4 N -0.531 5.531 5 C 0.145 3.855 6 C -0.120 4.120 7 C -0.060 4.060 8 C -0.111 4.111 9 C -0.085 4.085 10 C -0.167 4.167 11 C 0.177 3.823 12 S 0.006 5.994 13 C -0.061 4.061 14 C 0.046 3.954 15 C -0.144 4.144 16 C -0.151 4.151 17 C -0.512 4.512 18 H 0.032 0.968 19 C 0.022 3.978 20 N -0.943 5.943 21 Si 0.936 3.064 22 H -0.279 1.279 23 H -0.311 1.311 24 H -0.210 1.210 25 N -0.555 5.555 26 H 0.090 0.910 27 H 0.039 0.961 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.152 0.848 32 H 0.176 0.824 33 H 0.171 0.829 34 H 0.144 0.856 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.045 0.955 40 H 0.051 0.949 41 H 0.038 0.962 42 H 0.070 0.930 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.516 10.790 -22.631 25.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.093 4.093 3 C 0.051 3.949 4 N -0.249 5.249 5 C 0.017 3.983 6 C -0.139 4.139 7 C -0.081 4.081 8 C -0.129 4.129 9 C -0.105 4.105 10 C -0.177 4.177 11 C -0.090 4.090 12 S 0.248 5.752 13 C -0.209 4.209 14 C 0.044 3.956 15 C -0.201 4.201 16 C -0.208 4.208 17 C -0.552 4.552 18 H 0.050 0.950 19 C -0.176 4.176 20 N -0.582 5.582 21 Si 0.765 3.235 22 H -0.206 1.206 23 H -0.240 1.240 24 H -0.134 1.134 25 N -0.276 5.276 26 H 0.109 0.891 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.123 0.877 31 H 0.170 0.830 32 H 0.194 0.806 33 H 0.188 0.812 34 H 0.162 0.838 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.089 0.911 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.581 10.861 -22.253 24.896 hybrid contribution -0.478 -0.742 0.881 1.247 sum 2.103 10.120 -21.372 23.740 Atomic orbital electron populations 1.21620 0.92708 1.03602 1.01308 1.20456 0.97471 0.86860 1.04563 1.23569 0.90378 0.97968 0.82989 1.68667 1.17250 1.10054 1.28882 1.19412 0.94833 0.90079 0.93995 1.20995 1.01382 0.95886 0.95675 1.21549 0.93252 0.92990 1.00331 1.21456 0.98503 1.02013 0.90940 1.21149 0.96843 0.91627 1.00920 1.19282 1.07026 0.98341 0.93029 1.24745 0.91984 0.93058 0.99255 1.85178 1.78816 1.20308 0.90890 1.23530 1.03908 0.97532 0.95954 1.18369 0.93857 0.93730 0.89655 1.22292 0.96645 1.00069 1.01120 1.22387 1.00482 0.97978 0.99947 1.20983 1.45283 0.98022 0.90882 0.95002 1.25775 0.93956 1.00621 0.97234 1.70095 1.51787 1.32367 1.03946 0.86438 0.79380 0.81510 0.76124 1.20643 1.24043 1.13358 1.68637 1.18443 1.09841 1.30669 0.89135 0.94145 0.92524 0.89626 0.87748 0.82989 0.80626 0.81182 0.83818 0.90784 0.90936 0.91983 0.93288 0.93597 0.92980 0.94365 0.91122 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 9.89 71.98 0.71 -2.41 16 2 C -0.05 -1.41 6.33 29.85 0.19 -1.22 16 3 C 0.32 10.49 6.88 138.77 0.95 11.45 16 4 N -0.53 -16.57 10.32 -181.82 -1.88 -18.44 16 5 C 0.14 4.11 6.61 40.09 0.27 4.37 16 6 C -0.12 -2.36 10.01 22.29 0.22 -2.13 16 7 C -0.06 -0.78 9.95 22.06 0.22 -0.56 16 8 C -0.11 -1.55 9.96 22.07 0.22 -1.33 16 9 C -0.08 -1.80 9.45 22.24 0.21 -1.59 16 10 C -0.17 -4.83 5.75 -21.20 -0.12 -4.95 16 11 C 0.18 5.94 7.08 85.40 0.60 6.55 16 12 S 0.01 0.20 17.94 -56.49 -1.01 -0.82 16 13 C -0.06 -2.44 3.82 71.98 0.28 -2.17 16 14 C 0.05 2.03 0.52 -52.93 -0.03 2.00 16 15 C -0.14 -5.80 7.41 71.98 0.53 -5.26 16 16 C -0.15 -6.01 7.46 71.98 0.54 -5.47 16 17 C -0.51 -28.44 8.62 25.60 0.22 -28.22 16 18 H 0.03 1.99 7.99 -2.91 -0.02 1.97 16 19 C 0.02 1.26 5.32 84.66 0.45 1.71 16 20 N -0.94 -58.43 13.96 21.45 0.30 -58.13 16 21 Si 0.94 43.24 22.79 68.60 1.56 44.80 16 22 H -0.28 -12.60 7.10 99.48 0.71 -11.90 16 23 H -0.31 -14.67 7.11 99.48 0.71 -13.97 16 24 H -0.21 -8.40 4.65 99.48 0.46 -7.94 16 25 N -0.56 -20.03 9.19 -182.67 -1.68 -21.71 16 26 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 33 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 34 H 0.14 2.77 7.02 -2.91 -0.02 2.75 16 35 H 0.07 3.15 8.14 -2.40 -0.02 3.13 16 36 H 0.07 3.12 8.14 -2.40 -0.02 3.10 16 37 H 0.06 2.10 7.29 -2.38 -0.02 2.08 16 38 H 0.05 2.06 4.30 -2.39 -0.01 2.05 16 39 H 0.04 1.85 8.12 -2.39 -0.02 1.83 16 40 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.04 1.57 2.25 -2.38 -0.01 1.56 16 42 H 0.07 2.35 6.91 -2.39 -0.02 2.33 16 43 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -70.54 349.62 3.52 -67.02 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.77 Total: 16.53 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: 5.46 Total: -29.25 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -3.26 Total: -98.29 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.56 Total: 44.80 kcal Atomic # 16 Polarization: 0.20 SS G_CDS: -1.01 Total: -0.82 kcal Total: -70.54 3.52 -67.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594905621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.419 kcal (2) G-P(sol) polarization free energy of solvation -70.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds