Wall clock time and date at job start Tue Mar 31 2020 11:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47224 * 2 1 4 4 C 1.50704 * 109.47007 * 240.00534 * 2 1 3 5 5 H 1.08006 * 119.99702 * 241.33867 * 4 2 1 6 6 C 1.37875 * 120.00367 * 61.34779 * 4 2 1 7 7 N 1.31516 * 120.00144 * 193.97587 * 6 4 2 8 8 Si 1.86799 * 119.99798 * 13.97503 * 6 4 2 9 9 H 1.48501 * 109.47372 * 84.55161 * 8 6 4 10 10 H 1.48505 * 109.47005 * 204.55061 * 8 6 4 11 11 H 1.48498 * 109.47206 * 324.55002 * 8 6 4 12 12 C 1.52998 * 109.47441 * 120.00431 * 2 1 3 13 13 N 1.46505 * 109.46826 * 300.00000 * 12 2 1 14 14 C 1.34771 * 120.00219 * 179.97438 * 13 12 2 15 15 O 1.21623 * 119.99783 * 0.02562 * 14 13 12 16 16 C 1.47346 * 120.00504 * 180.02562 * 14 13 12 17 17 C 1.39187 * 120.76727 * 90.01884 * 16 14 13 18 18 F 1.35107 * 119.70912 * 0.02562 * 17 16 14 19 19 C 1.39284 * 120.58581 * 179.97438 * 17 16 14 20 20 C 1.36016 * 121.82906 * 0.02562 * 19 17 16 21 21 C 1.40376 * 120.53220 * 0.02562 * 20 19 17 22 22 C 1.40644 * 122.23760 * 180.02562 * 21 20 19 23 23 C 1.36297 * 118.65193 * 179.97438 * 22 21 20 24 24 N 1.32493 * 121.89921 * 0.02562 * 23 22 21 25 25 C 1.31384 * 122.67480 * 359.97438 * 24 23 22 26 26 C 1.39978 * 119.84777 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.47428 * 309.36551 * 1 2 3 28 28 H 1.09007 * 109.46944 * 69.36829 * 1 2 3 29 29 H 1.09000 * 109.46991 * 189.35647 * 1 2 3 30 30 H 1.09000 * 109.47757 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47302 * 300.00779 * 3 2 1 32 32 H 1.08999 * 109.46764 * 59.99831 * 3 2 1 33 33 H 0.96993 * 120.00062 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47274 * 180.02562 * 12 2 1 35 35 H 1.09002 * 109.47210 * 59.99502 * 12 2 1 36 36 H 0.97003 * 120.00074 * 0.02562 * 13 12 2 37 37 H 1.08003 * 119.08316 * 180.02562 * 19 17 16 38 38 H 1.08005 * 119.73605 * 180.27722 * 20 19 17 39 39 H 1.07999 * 120.67033 * 359.94978 * 22 21 20 40 40 H 1.08001 * 119.05209 * 179.97438 * 23 22 21 41 41 H 1.08004 * 120.07414 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6353 -1.6009 -1.1317 6 6 1.7223 -0.2232 -2.4826 7 7 1.9158 -0.9724 -3.5461 8 14 1.0276 1.5008 -2.6684 9 1 2.1416 2.4819 -2.7083 10 1 0.2469 1.5867 -3.9288 11 1 0.1418 1.8044 -1.5158 12 6 2.0400 -0.7213 1.2491 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4915 3.6694 15 8 2.5761 -1.4803 3.7810 16 6 1.3853 0.2027 4.8726 17 6 0.1715 -0.1527 5.4537 18 9 -0.5658 -1.1458 4.9100 19 6 -0.2894 0.5057 6.5913 20 6 0.4177 1.5107 7.1744 21 6 1.6492 1.9199 6.6391 22 6 2.4101 2.9542 7.2129 23 6 3.5964 3.2920 6.6330 24 7 4.0470 2.6754 5.5503 25 6 3.3888 1.7019 4.9627 26 6 2.1589 1.2803 5.4813 27 1 -0.3634 0.6518 0.7945 28 1 -0.3633 0.3621 -0.9618 29 1 -0.3633 -1.0140 0.1671 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6981 -0.6295 -4.4269 34 1 3.1300 -0.7209 1.2493 35 1 1.6767 -1.7490 1.2491 36 1 0.9937 0.7577 2.3564 37 1 -1.2344 0.2099 7.0224 38 1 0.0305 1.9951 8.0586 39 1 2.0613 3.4706 8.0950 40 1 4.1857 4.0856 7.0680 41 1 3.7954 1.2286 4.0811 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597760308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:45 Heat of formation + Delta-G solvation = -33.419046 kcal Electronic energy + Delta-G solvation = -26194.642384 eV Core-core repulsion = 22374.698768 eV Total energy + Delta-G solvation = -3819.943616 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.20992 -41.93216 -40.72272 -38.55041 -37.97917 -35.14007 -34.06472 -33.36060 -32.22055 -30.78839 -28.10436 -27.84353 -27.03132 -25.66865 -24.59125 -24.31448 -21.73149 -21.04926 -19.72112 -19.23663 -18.53532 -18.13729 -17.71779 -17.11599 -17.01956 -16.72917 -16.60116 -16.17811 -16.05281 -15.44728 -15.16665 -15.05589 -14.92289 -14.80910 -14.42104 -14.40783 -14.07486 -14.02775 -13.79678 -13.05458 -12.94413 -12.90510 -12.77782 -12.42715 -12.24491 -11.99799 -11.81787 -11.37915 -11.14351 -11.06299 -10.64474 -10.61061 -10.44042 -10.23049 -10.19888 -9.20650 -8.31975 -6.34002 -0.98614 -0.33232 0.53787 1.25878 1.35058 1.36126 1.49022 1.73411 2.04662 2.32828 2.81275 2.88391 3.03801 3.33542 3.38501 3.52719 3.60211 3.74205 3.81000 4.00254 4.21161 4.25847 4.34843 4.46074 4.51309 4.64114 4.69271 4.71878 4.76295 4.79946 4.81352 4.87798 4.93493 5.00197 5.07724 5.15062 5.28940 5.44527 5.48907 5.63293 5.66711 5.74010 6.25581 6.36993 6.69682 6.88959 6.98969 7.30813 8.85178 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017277 B = 0.003828 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.222311 B = 7313.459618 C = 7976.849600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.028 3.972 3 C -0.147 4.147 4 C -0.518 4.518 5 H 0.029 0.971 6 C 0.020 3.980 7 N -0.944 5.944 8 Si 0.943 3.057 9 H -0.281 1.281 10 H -0.313 1.313 11 H -0.207 1.207 12 C 0.154 3.846 13 N -0.696 5.696 14 C 0.559 3.441 15 O -0.573 6.573 16 C -0.164 4.164 17 C 0.136 3.864 18 F -0.138 7.138 19 C -0.136 4.136 20 C -0.033 4.033 21 C -0.048 4.048 22 C -0.117 4.117 23 C 0.059 3.941 24 N -0.496 5.496 25 C 0.118 3.882 26 C -0.072 4.072 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.068 0.932 33 H 0.265 0.735 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.411 0.589 37 H 0.181 0.819 38 H 0.199 0.801 39 H 0.194 0.806 40 H 0.187 0.813 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.137 13.650 27.941 31.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.027 3.973 3 C -0.204 4.204 4 C -0.557 4.557 5 H 0.048 0.952 6 C -0.178 4.178 7 N -0.583 5.583 8 Si 0.772 3.228 9 H -0.208 1.208 10 H -0.242 1.242 11 H -0.130 1.130 12 C 0.031 3.969 13 N -0.347 5.347 14 C 0.345 3.655 15 O -0.453 6.453 16 C -0.170 4.170 17 C 0.116 3.884 18 F -0.116 7.116 19 C -0.155 4.155 20 C -0.051 4.051 21 C -0.054 4.054 22 C -0.136 4.136 23 C -0.086 4.086 24 N -0.204 5.204 25 C -0.050 4.050 26 C -0.075 4.075 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.249 0.751 37 H 0.198 0.802 38 H 0.216 0.784 39 H 0.211 0.789 40 H 0.204 0.796 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.854 13.241 27.534 31.108 hybrid contribution -0.723 -0.442 -1.321 1.569 sum -6.578 12.799 26.213 29.903 Atomic orbital electron populations 1.22224 0.96106 1.00604 1.00887 1.18655 0.93771 0.93125 0.91729 1.22296 1.01177 0.96737 1.00165 1.20980 1.33093 1.11174 0.90411 0.95228 1.25827 0.95296 1.01528 0.95167 1.70104 1.50550 1.38256 0.99423 0.86348 0.79444 0.79998 0.76972 1.20820 1.24249 1.13041 1.21193 0.97840 0.95146 0.82759 1.46124 1.52077 1.31651 1.04857 1.18270 0.79889 0.83484 0.83835 1.90814 1.39541 1.27624 1.87333 1.20728 0.96725 1.00888 0.98644 1.18165 0.88233 0.87492 0.94486 1.91554 1.75772 1.58966 1.85350 1.21157 1.03539 0.97216 0.93631 1.21448 0.90526 0.93704 0.99397 1.18525 0.96692 0.96588 0.93556 1.22447 0.94280 0.95403 1.01466 1.22930 0.95520 0.98960 0.91225 1.67500 1.34964 1.07369 1.10553 1.22829 0.90558 0.93123 0.98534 1.19501 0.95771 0.95188 0.97042 0.92018 0.93322 0.94003 0.93193 0.94466 0.91279 0.92589 0.93092 0.93655 0.75119 0.80211 0.78407 0.78856 0.79615 0.84210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.51 7.53 71.98 0.54 -4.97 16 2 C 0.03 1.23 0.50 -52.93 -0.03 1.20 16 3 C -0.15 -5.65 7.52 71.98 0.54 -5.11 16 4 C -0.52 -28.95 8.62 25.60 0.22 -28.73 16 5 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 6 C 0.02 1.12 5.32 84.65 0.45 1.57 16 7 N -0.94 -58.95 13.96 21.45 0.30 -58.65 16 8 Si 0.94 43.10 22.79 68.60 1.56 44.66 16 9 H -0.28 -12.59 7.10 99.48 0.71 -11.89 16 10 H -0.31 -14.68 7.11 99.48 0.71 -13.98 16 11 H -0.21 -8.02 4.65 99.48 0.46 -7.56 16 12 C 0.15 6.38 4.49 86.38 0.39 6.77 16 13 N -0.70 -23.41 5.00 -466.44 -2.33 -25.74 16 14 C 0.56 19.61 5.86 86.64 0.51 20.11 16 15 O -0.57 -25.09 17.11 -4.10 -0.07 -25.16 16 16 C -0.16 -4.43 5.81 -18.65 -0.11 -4.54 16 17 C 0.14 3.06 7.29 22.75 0.17 3.22 16 18 F -0.14 -3.69 16.82 44.97 0.76 -2.94 16 19 C -0.14 -1.65 9.86 22.00 0.22 -1.43 16 20 C -0.03 -0.27 9.75 22.27 0.22 -0.05 16 21 C -0.05 -0.70 5.75 -21.30 -0.12 -0.82 16 22 C -0.12 -1.14 9.89 22.40 0.22 -0.92 16 23 C 0.06 0.87 11.07 84.14 0.93 1.80 16 24 N -0.50 -11.86 10.31 -195.79 -2.02 -13.88 16 25 C 0.12 3.12 10.73 85.18 0.91 4.03 16 26 C -0.07 -1.68 5.90 -19.99 -0.12 -1.80 16 27 H 0.06 1.91 7.13 -2.39 -0.02 1.90 16 28 H 0.05 1.99 4.30 -2.38 -0.01 1.98 16 29 H 0.04 1.67 8.12 -2.39 -0.02 1.65 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.04 1.48 2.25 -2.39 -0.01 1.48 16 32 H 0.07 2.10 6.86 -2.39 -0.02 2.08 16 33 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 34 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.41 11.60 6.24 -92.71 -0.58 11.02 16 37 H 0.18 0.97 8.06 -2.91 -0.02 0.95 16 38 H 0.20 -0.40 8.06 -2.91 -0.02 -0.42 16 39 H 0.19 -0.06 8.06 -2.91 -0.02 -0.08 16 40 H 0.19 1.50 8.06 -2.91 -0.02 1.47 16 41 H 0.14 4.16 7.37 -2.91 -0.02 4.14 16 Total: -1.00 -79.15 335.94 3.40 -75.75 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.26 Total: 15.61 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 4.94 Total: -9.66 kcal Atomic # 7 Polarization: -94.21 SS G_CDS: -4.05 Total: -98.26 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.07 Total: -25.16 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.76 Total: -2.94 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.56 Total: 44.66 kcal Total: -79.15 3.40 -75.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597760308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.331 kcal (2) G-P(sol) polarization free energy of solvation -79.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds