Wall clock time and date at job start Tue Mar 31 2020 11:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.27568 * 126.41482 * 2 1 4 4 N 1.39155 * 113.16357 * 180.02562 * 3 2 1 5 5 C 1.46505 * 124.43651 * 179.97438 * 4 3 2 6 6 H 1.09004 * 110.26341 * 177.94739 * 5 4 3 7 7 C 1.54339 * 110.30455 * 300.02119 * 5 4 3 8 8 C 1.54347 * 102.39272 * 145.36996 * 7 5 4 9 9 C 1.51370 * 105.25432 * 333.60607 * 8 7 5 10 10 C 1.38460 * 109.63214 * 17.23176 * 9 8 7 11 11 C 1.38464 * 119.82729 * 179.97438 * 10 9 8 12 12 C 1.38152 * 120.27196 * 359.96132 * 11 10 9 13 13 C 1.38170 * 119.96471 * 0.02562 * 12 11 10 14 14 C 1.38378 * 119.90583 * 359.97438 * 13 12 11 15 15 F 1.35095 * 119.92374 * 179.97438 * 14 13 12 16 16 C 1.34943 * 111.12016 * 0.26104 * 4 3 2 17 17 O 1.21305 * 127.50014 * 179.71217 * 16 4 3 18 18 C 1.51440 * 126.41815 * 180.02562 * 2 1 3 19 19 H 1.09000 * 110.60446 * 61.45213 * 18 2 1 20 20 C 1.52992 * 110.60739 * 298.48280 * 18 2 1 21 21 C 1.50706 * 109.47336 * 174.99701 * 20 18 2 22 22 H 1.07998 * 119.99476 * 0.02562 * 21 20 18 23 23 C 1.37881 * 119.99874 * 179.97438 * 21 20 18 24 24 N 1.31504 * 120.00063 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99291 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47527 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47026 * 120.00565 * 25 23 21 28 28 H 1.48503 * 109.46881 * 239.99864 * 25 23 21 29 29 H 1.09006 * 109.47282 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46822 * 119.97796 * 1 2 3 31 31 H 1.08993 * 109.47500 * 239.97887 * 1 2 3 32 32 H 1.09003 * 110.82474 * 27.14775 * 7 5 4 33 33 H 1.08999 * 110.82599 * 263.59853 * 7 5 4 34 34 H 1.09002 * 110.30226 * 92.58047 * 8 7 5 35 35 H 1.08997 * 110.30441 * 214.63608 * 8 7 5 36 36 H 1.08005 * 119.86608 * 179.97438 * 11 10 9 37 37 H 1.07998 * 120.02366 * 180.02562 * 12 11 10 38 38 H 1.08000 * 120.05248 * 180.02562 * 13 12 11 39 39 H 1.09001 * 109.47333 * 294.99762 * 20 18 2 40 40 H 1.09004 * 109.47521 * 55.00151 * 20 18 2 41 41 H 0.97005 * 119.99411 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6188 0.7076 -0.0006 5 6 4.7022 1.6938 -0.0012 6 1 5.6693 1.1923 0.0350 7 6 4.6101 2.5897 -1.2546 8 6 5.0967 3.9545 -0.7228 9 6 4.7825 3.9399 0.7579 10 6 4.5561 2.6384 1.1726 11 6 4.2493 2.3815 2.4981 12 6 4.1691 3.4180 3.4080 13 6 4.3950 4.7172 2.9956 14 6 4.7018 4.9774 1.6716 15 9 4.9223 6.2476 1.2679 16 6 3.8035 -0.6291 -0.0067 17 8 4.8579 -1.2288 -0.0137 18 6 2.4061 -1.2186 -0.0005 19 1 2.2414 -1.8164 -0.8970 20 6 2.1762 -2.0580 1.2578 21 6 2.9908 -3.3231 1.1736 22 1 3.6108 -3.5095 0.3092 23 6 2.9453 -4.2419 2.2006 24 7 2.1907 -4.0146 3.2533 25 14 3.9556 -5.8097 2.0964 26 1 4.7133 -5.8265 0.8194 27 1 4.9052 -5.8633 3.2368 28 1 3.0508 -6.9861 2.1500 29 1 -0.3634 1.0277 0.0005 30 1 -0.3633 -0.5135 -0.8902 31 1 -0.3634 -0.5141 0.8897 32 1 3.5813 2.6563 -1.6087 33 1 5.2689 2.2235 -2.0420 34 1 6.1699 4.0611 -0.8807 35 1 4.5601 4.7654 -1.2153 36 1 4.0722 1.3665 2.8222 37 1 3.9299 3.2130 4.4410 38 1 4.3331 5.5286 3.7058 39 1 2.4804 -1.4877 2.1355 40 1 1.1190 -2.3113 1.3375 41 1 2.1591 -4.6609 3.9760 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601948986.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:34 Heat of formation + Delta-G solvation = -5.895985 kcal Electronic energy + Delta-G solvation = -26301.875152 eV Core-core repulsion = 22483.125025 eV Total energy + Delta-G solvation = -3818.750127 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.92416 -41.03186 -39.72263 -36.82549 -36.03291 -33.71177 -32.58292 -30.68441 -30.38725 -29.28306 -28.40694 -26.60332 -25.47879 -22.82800 -22.52120 -21.47421 -21.08278 -20.12483 -18.88352 -17.42762 -16.63692 -16.43486 -16.23456 -15.72373 -15.65798 -15.41156 -14.69869 -14.59246 -14.28415 -14.19101 -13.82387 -13.54168 -13.25166 -13.00581 -12.87587 -12.45989 -12.36907 -12.16153 -12.11835 -11.91908 -11.60900 -11.55929 -11.40058 -11.29275 -11.09015 -11.05005 -10.81795 -10.60407 -10.22935 -9.56997 -9.41694 -8.86032 -8.78134 -8.66849 -8.39997 -8.17207 -6.06056 -4.07213 1.07145 1.13092 2.16141 2.74836 3.15702 3.31550 3.39305 3.46705 3.51650 4.08624 4.26799 4.34621 4.44254 4.47250 4.72116 4.80589 4.91317 5.03676 5.05439 5.25022 5.31377 5.37911 5.42377 5.47044 5.58579 5.72909 5.74718 5.77410 5.84727 5.91323 6.01019 6.04066 6.07500 6.13074 6.29294 6.36134 6.43561 6.62696 6.80906 6.85053 7.38915 7.43335 7.92412 8.16639 8.25937 8.48863 8.98174 9.57519 11.05153 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017194 B = 0.003759 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.099896 B = 7446.588062 C = 7703.297762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.101 3.899 3 N -0.250 5.250 4 N -0.476 5.476 5 C 0.209 3.791 6 H 0.118 0.882 7 C -0.124 4.124 8 C -0.073 4.073 9 C -0.126 4.126 10 C -0.067 4.067 11 C -0.093 4.093 12 C -0.091 4.091 13 C -0.151 4.151 14 C 0.104 3.896 15 F -0.144 7.144 16 C 0.510 3.490 17 O -0.487 6.487 18 C -0.130 4.130 19 H 0.121 0.879 20 C 0.056 3.944 21 C -0.515 4.515 22 H 0.064 0.936 23 C 0.060 3.940 24 N -0.897 5.897 25 Si 0.894 3.106 26 H -0.271 1.271 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.127 0.873 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.019 0.981 40 H 0.038 0.962 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.065 16.884 -5.284 17.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 N -0.057 5.057 4 N -0.297 5.297 5 C 0.106 3.894 6 H 0.136 0.864 7 C -0.163 4.163 8 C -0.110 4.110 9 C -0.127 4.127 10 C -0.068 4.068 11 C -0.111 4.111 12 C -0.109 4.109 13 C -0.170 4.170 14 C 0.085 3.915 15 F -0.122 7.122 16 C 0.298 3.702 17 O -0.357 6.357 18 C -0.154 4.154 19 H 0.139 0.861 20 C 0.018 3.982 21 C -0.553 4.553 22 H 0.082 0.918 23 C -0.141 4.141 24 N -0.537 5.537 25 Si 0.722 3.278 26 H -0.195 1.195 27 H -0.211 1.211 28 H -0.210 1.210 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.145 0.855 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.037 0.963 40 H 0.056 0.944 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.883 17.572 -5.158 18.335 hybrid contribution 0.711 -1.424 0.214 1.606 sum 1.594 16.148 -4.944 16.963 Atomic orbital electron populations 1.20301 0.85400 1.03443 1.04146 1.25454 0.97286 0.91841 0.94655 1.74525 0.88722 1.26701 1.15727 1.49793 1.02516 1.05768 1.71575 1.20470 0.89449 0.87451 0.91981 0.86444 1.22691 1.03467 0.93458 0.96648 1.20938 1.01786 0.98293 0.89977 1.20450 1.02916 0.92734 0.96603 1.20564 0.98151 0.93704 0.94405 1.20767 0.98378 1.00165 0.91818 1.20915 0.98697 0.91323 0.99981 1.21029 1.03598 0.98413 0.93962 1.17167 1.03613 0.77956 0.92742 1.91463 1.92468 1.37040 1.91256 1.21523 0.92119 0.81808 0.74723 1.90719 1.31195 1.65819 1.47932 1.22060 0.90534 0.96456 1.06361 0.86148 1.18890 0.98544 0.93219 0.87573 1.21215 1.26280 1.02828 1.04953 0.91781 1.24945 0.95468 0.98511 0.95205 1.69955 1.39520 1.36126 1.08053 0.86490 0.80097 0.82960 0.78279 1.19541 1.21051 1.21013 0.90715 0.89740 0.88999 0.89296 0.89811 0.89696 0.90142 0.85501 0.84690 0.84661 0.96301 0.94393 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.47 36.01 0.38 -0.51 16 2 C 0.10 1.63 6.93 -78.73 -0.55 1.09 16 3 N -0.25 -4.21 11.48 35.53 0.41 -3.80 16 4 N -0.48 -8.46 3.29 -53.52 -0.18 -8.64 16 5 C 0.21 3.16 3.61 -68.05 -0.25 2.91 16 6 H 0.12 1.81 7.73 -51.93 -0.40 1.41 16 7 C -0.12 -1.48 6.75 -25.32 -0.17 -1.65 16 8 C -0.07 -0.78 6.75 -26.85 -0.18 -0.97 16 9 C -0.13 -1.65 6.13 -104.12 -0.64 -2.29 16 10 C -0.07 -0.99 5.64 -104.13 -0.59 -1.57 16 11 C -0.09 -1.37 10.00 -39.53 -0.40 -1.77 16 12 C -0.09 -1.12 10.04 -39.64 -0.40 -1.52 16 13 C -0.15 -1.76 10.02 -39.55 -0.40 -2.15 16 14 C 0.10 1.34 7.29 -39.44 -0.29 1.05 16 15 F -0.14 -1.82 17.25 2.25 0.04 -1.79 16 16 C 0.51 10.79 7.61 -10.43 -0.08 10.71 16 17 O -0.49 -11.86 16.84 5.54 0.09 -11.77 16 18 C -0.13 -2.60 2.95 -92.08 -0.27 -2.87 16 19 H 0.12 2.29 8.14 -51.93 -0.42 1.87 16 20 C 0.06 1.36 4.49 -27.88 -0.13 1.23 16 21 C -0.51 -14.26 8.46 -34.44 -0.29 -14.55 16 22 H 0.06 1.82 7.43 -52.49 -0.39 1.43 16 23 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 24 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16 25 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 26 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 1.12 8.04 -51.93 -0.42 0.70 16 32 H 0.09 1.13 7.78 -51.93 -0.40 0.72 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.13 2.09 8.06 -52.48 -0.42 1.66 16 37 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 39 H 0.02 0.50 8.12 -51.93 -0.42 0.08 16 40 H 0.04 0.92 8.02 -51.93 -0.42 0.50 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 354.07 15.07 5.34 5.34 Total: -1.00 -32.38 354.07 -8.31 -40.69 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.39 Total: -0.30 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -4.33 Total: -11.26 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.97 Total: -37.82 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.38 -8.31 -40.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601948986.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.797 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds