Wall clock time and date at job start Tue Mar 31 2020 11:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.27568 * 126.41482 * 2 1 4 4 N 1.39155 * 113.16357 * 180.02562 * 3 2 1 5 5 C 1.46505 * 124.43651 * 179.97438 * 4 3 2 6 6 H 1.09004 * 110.26341 * 177.94739 * 5 4 3 7 7 C 1.54339 * 110.30455 * 300.02119 * 5 4 3 8 8 C 1.54347 * 102.39272 * 145.36996 * 7 5 4 9 9 C 1.51370 * 105.25432 * 333.60607 * 8 7 5 10 10 C 1.38460 * 109.63214 * 17.23176 * 9 8 7 11 11 C 1.38464 * 119.82729 * 179.97438 * 10 9 8 12 12 C 1.38152 * 120.27196 * 359.96132 * 11 10 9 13 13 C 1.38170 * 119.96471 * 0.02562 * 12 11 10 14 14 C 1.38378 * 119.90583 * 359.97438 * 13 12 11 15 15 F 1.35095 * 119.92374 * 179.97438 * 14 13 12 16 16 C 1.34943 * 111.12016 * 0.26104 * 4 3 2 17 17 O 1.21305 * 127.50014 * 179.71217 * 16 4 3 18 18 C 1.51440 * 126.41815 * 180.02562 * 2 1 3 19 19 H 1.09000 * 110.60446 * 61.45213 * 18 2 1 20 20 C 1.52992 * 110.60739 * 298.48280 * 18 2 1 21 21 C 1.50706 * 109.47336 * 174.99701 * 20 18 2 22 22 H 1.07998 * 119.99476 * 0.02562 * 21 20 18 23 23 C 1.37881 * 119.99874 * 179.97438 * 21 20 18 24 24 N 1.31504 * 120.00063 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99291 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47527 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47026 * 120.00565 * 25 23 21 28 28 H 1.48503 * 109.46881 * 239.99864 * 25 23 21 29 29 H 1.09006 * 109.47282 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46822 * 119.97796 * 1 2 3 31 31 H 1.08993 * 109.47500 * 239.97887 * 1 2 3 32 32 H 1.09003 * 110.82474 * 27.14775 * 7 5 4 33 33 H 1.08999 * 110.82599 * 263.59853 * 7 5 4 34 34 H 1.09002 * 110.30226 * 92.58047 * 8 7 5 35 35 H 1.08997 * 110.30441 * 214.63608 * 8 7 5 36 36 H 1.08005 * 119.86608 * 179.97438 * 11 10 9 37 37 H 1.07998 * 120.02366 * 180.02562 * 12 11 10 38 38 H 1.08000 * 120.05248 * 180.02562 * 13 12 11 39 39 H 1.09001 * 109.47333 * 294.99762 * 20 18 2 40 40 H 1.09004 * 109.47521 * 55.00151 * 20 18 2 41 41 H 0.97005 * 119.99411 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6188 0.7076 -0.0006 5 6 4.7022 1.6938 -0.0012 6 1 5.6693 1.1923 0.0350 7 6 4.6101 2.5897 -1.2546 8 6 5.0967 3.9545 -0.7228 9 6 4.7825 3.9399 0.7579 10 6 4.5561 2.6384 1.1726 11 6 4.2493 2.3815 2.4981 12 6 4.1691 3.4180 3.4080 13 6 4.3950 4.7172 2.9956 14 6 4.7018 4.9774 1.6716 15 9 4.9223 6.2476 1.2679 16 6 3.8035 -0.6291 -0.0067 17 8 4.8579 -1.2288 -0.0137 18 6 2.4061 -1.2186 -0.0005 19 1 2.2414 -1.8164 -0.8970 20 6 2.1762 -2.0580 1.2578 21 6 2.9908 -3.3231 1.1736 22 1 3.6108 -3.5095 0.3092 23 6 2.9453 -4.2419 2.2006 24 7 2.1907 -4.0146 3.2533 25 14 3.9556 -5.8097 2.0964 26 1 4.7133 -5.8265 0.8194 27 1 4.9052 -5.8633 3.2368 28 1 3.0508 -6.9861 2.1500 29 1 -0.3634 1.0277 0.0005 30 1 -0.3633 -0.5135 -0.8902 31 1 -0.3634 -0.5141 0.8897 32 1 3.5813 2.6563 -1.6087 33 1 5.2689 2.2235 -2.0420 34 1 6.1699 4.0611 -0.8807 35 1 4.5601 4.7654 -1.2153 36 1 4.0722 1.3665 2.8222 37 1 3.9299 3.2130 4.4410 38 1 4.3331 5.5286 3.7058 39 1 2.4804 -1.4877 2.1355 40 1 1.1190 -2.3113 1.3375 41 1 2.1591 -4.6609 3.9760 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601948986.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:34 Heat of formation + Delta-G solvation = -23.611564 kcal Electronic energy + Delta-G solvation = -26302.643357 eV Core-core repulsion = 22483.125025 eV Total energy + Delta-G solvation = -3819.518332 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.91067 -42.45313 -40.85623 -38.47693 -37.11958 -35.55256 -34.10409 -32.23214 -31.71462 -30.29780 -29.47466 -28.22701 -26.96778 -24.39300 -23.83794 -22.54162 -22.15432 -21.72244 -20.29963 -18.78792 -18.25872 -17.76876 -17.43672 -17.03418 -16.79033 -16.65120 -16.51912 -16.02945 -15.74323 -15.39722 -15.05474 -14.72760 -14.53823 -14.24291 -14.08335 -13.94917 -13.58360 -13.48809 -13.35871 -13.23149 -13.16103 -12.92831 -12.83191 -12.68617 -12.58495 -12.29598 -12.22250 -12.06793 -11.86973 -11.54458 -11.28333 -10.66657 -10.43296 -9.87938 -9.68773 -9.57910 -8.23565 -6.30888 0.03032 0.10609 0.70149 1.35522 1.37812 1.39112 1.51044 1.61406 2.39416 2.47472 2.95669 3.10606 3.14151 3.25726 3.31029 3.37008 3.83432 3.88189 3.92552 3.97905 4.08495 4.25554 4.33224 4.35811 4.45693 4.62990 4.65722 4.75008 4.80263 4.86695 4.90044 4.99699 5.02457 5.07399 5.10320 5.25294 5.25771 5.34014 5.36474 5.42016 5.58837 5.74412 5.82154 6.14061 6.71487 6.79467 6.90469 7.37012 8.87694 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017194 B = 0.003759 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.099896 B = 7446.588062 C = 7703.297762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.115 3.885 3 N -0.252 5.252 4 N -0.468 5.468 5 C 0.196 3.804 6 H 0.105 0.895 7 C -0.113 4.113 8 C -0.067 4.067 9 C -0.126 4.126 10 C -0.087 4.087 11 C -0.116 4.116 12 C -0.089 4.089 13 C -0.141 4.141 14 C 0.098 3.902 15 F -0.141 7.141 16 C 0.497 3.503 17 O -0.533 6.533 18 C -0.134 4.134 19 H 0.131 0.869 20 C 0.069 3.931 21 C -0.530 4.530 22 H 0.051 0.949 23 C 0.011 3.989 24 N -0.925 5.925 25 Si 0.953 3.047 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.268 1.268 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.157 0.843 38 H 0.166 0.834 39 H -0.016 1.016 40 H 0.039 0.961 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.589 18.655 -5.961 19.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.078 4.078 3 N -0.058 5.058 4 N -0.287 5.287 5 C 0.094 3.906 6 H 0.122 0.878 7 C -0.152 4.152 8 C -0.104 4.104 9 C -0.128 4.128 10 C -0.088 4.088 11 C -0.135 4.135 12 C -0.106 4.106 13 C -0.159 4.159 14 C 0.079 3.921 15 F -0.119 7.119 16 C 0.286 3.714 17 O -0.407 6.407 18 C -0.157 4.157 19 H 0.148 0.852 20 C 0.031 3.969 21 C -0.568 4.568 22 H 0.069 0.931 23 C -0.187 4.187 24 N -0.566 5.566 25 Si 0.778 3.222 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.193 1.193 29 H 0.116 0.884 30 H 0.130 0.870 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.174 0.826 38 H 0.184 0.816 39 H 0.003 0.997 40 H 0.057 0.943 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.203 19.387 -5.842 20.249 hybrid contribution 0.900 -1.915 0.472 2.168 sum 1.103 17.472 -5.370 18.312 Atomic orbital electron populations 1.20536 0.81853 1.05396 1.05340 1.25998 0.98945 0.89443 0.93396 1.74591 0.88065 1.26487 1.16662 1.49864 1.03583 1.05133 1.70120 1.20794 0.88052 0.87416 0.94323 0.87760 1.22650 1.03701 0.93390 0.95410 1.21000 1.03179 0.97806 0.88381 1.20662 1.02222 0.91952 0.97933 1.20539 0.99707 0.94411 0.94127 1.20745 1.00296 0.99580 0.92841 1.21124 0.97982 0.91010 1.00531 1.21347 1.01725 0.98742 0.94111 1.17307 1.03621 0.77958 0.93179 1.91473 1.92435 1.36721 1.91284 1.21731 0.91937 0.83173 0.74558 1.90670 1.32576 1.67056 1.50377 1.21938 0.91393 0.97751 1.04654 0.85192 1.18589 0.97773 0.92272 0.88295 1.21490 1.26433 1.04279 1.04630 0.93055 1.25707 0.96515 1.01546 0.94950 1.70038 1.40642 1.37268 1.08620 0.85575 0.78813 0.79845 0.77927 1.19752 1.20926 1.19281 0.88385 0.86972 0.89119 0.89771 0.88127 0.87763 0.88444 0.88518 0.82555 0.81618 0.99735 0.94274 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.58 10.47 71.24 0.75 -0.83 16 2 C 0.11 3.66 6.93 46.83 0.32 3.98 16 3 N -0.25 -8.40 11.48 -40.85 -0.47 -8.87 16 4 N -0.47 -17.10 3.29 -441.52 -1.45 -18.55 16 5 C 0.20 6.04 3.61 44.91 0.16 6.20 16 6 H 0.10 3.42 7.73 -2.38 -0.02 3.40 16 7 C -0.11 -2.57 6.75 31.51 0.21 -2.36 16 8 C -0.07 -1.29 6.75 30.52 0.21 -1.08 16 9 C -0.13 -3.14 6.13 -19.54 -0.12 -3.26 16 10 C -0.09 -2.57 5.64 -19.54 -0.11 -2.68 16 11 C -0.12 -3.54 10.00 22.30 0.22 -3.32 16 12 C -0.09 -2.09 10.04 22.23 0.22 -1.87 16 13 C -0.14 -2.94 10.02 22.29 0.22 -2.72 16 14 C 0.10 2.31 7.29 22.36 0.16 2.47 16 15 F -0.14 -3.18 17.25 44.97 0.78 -2.41 16 16 C 0.50 21.99 7.61 87.94 0.67 22.66 16 17 O -0.53 -27.45 16.84 -3.11 -0.05 -27.51 16 18 C -0.13 -5.45 2.95 -11.74 -0.03 -5.49 16 19 H 0.13 5.00 8.14 -2.39 -0.02 4.98 16 20 C 0.07 3.46 4.49 29.85 0.13 3.60 16 21 C -0.53 -30.29 8.46 25.60 0.22 -30.08 16 22 H 0.05 3.01 7.43 -2.91 -0.02 2.99 16 23 C 0.01 0.65 5.46 84.66 0.46 1.11 16 24 N -0.93 -54.80 13.29 21.45 0.28 -54.51 16 25 Si 0.95 45.59 29.54 68.60 2.03 47.62 16 26 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 27 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 28 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 29 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.09 2.05 8.04 -2.39 -0.02 2.04 16 32 H 0.08 2.01 7.78 -2.39 -0.02 1.99 16 33 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.10 3.47 8.06 -2.91 -0.02 3.45 16 37 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 38 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 39 H -0.02 -0.89 8.12 -2.39 -0.02 -0.91 16 40 H 0.04 1.93 8.02 -2.38 -0.02 1.91 16 41 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 Total: -1.00 -72.38 354.07 5.86 -66.51 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 1.05 Total: 11.37 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 3.70 Total: -13.65 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -1.64 Total: -81.93 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.05 Total: -27.51 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.78 Total: -2.41 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -72.38 5.86 -66.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601948986.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.903 kcal (2) G-P(sol) polarization free energy of solvation -72.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds