Wall clock time and date at job start Tue Mar 31 2020 10:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38087 * 120.02904 * 2 1 4 4 C 1.38497 * 120.05512 * 179.97438 * 3 2 1 5 5 F 1.35098 * 119.94669 * 180.02562 * 4 3 2 6 6 C 1.38534 * 120.10417 * 0.02562 * 4 3 2 7 7 C 1.38050 * 120.05153 * 359.68010 * 6 4 3 8 8 C 1.38937 * 120.02580 * 179.97438 * 2 1 3 9 9 N 1.39831 * 120.05374 * 0.02562 * 8 2 1 10 10 C 1.37124 * 120.00117 * 90.00201 * 9 8 2 11 11 H 1.08003 * 120.00278 * 185.64315 * 10 9 8 12 12 C 1.38885 * 120.00203 * 5.63474 * 10 9 8 13 13 N 1.31433 * 119.99536 * 353.97848 * 12 10 9 14 14 Si 1.86791 * 120.00262 * 173.97129 * 12 10 9 15 15 H 1.48502 * 109.47236 * 60.00679 * 14 12 10 16 16 H 1.48503 * 109.47160 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47241 * 300.00683 * 14 12 10 18 18 C 1.34782 * 120.00165 * 270.00342 * 9 8 2 19 19 O 1.21276 * 119.99763 * 5.39060 * 18 9 8 20 20 C 1.50703 * 120.00160 * 185.11501 * 18 9 8 21 21 C 1.52996 * 109.47220 * 175.13740 * 20 18 9 22 22 N 1.46497 * 109.47143 * 179.97438 * 21 20 18 23 23 C 1.36338 * 125.64048 * 269.69449 * 22 21 20 24 24 C 1.34851 * 108.22154 * 179.82910 * 23 22 21 25 25 C 1.40893 * 107.41634 * 0.42745 * 24 23 22 26 26 C 1.34851 * 107.41367 * 359.73664 * 25 24 23 27 27 H 1.08995 * 109.47194 * 270.01676 * 1 2 3 28 28 H 1.09004 * 109.47238 * 30.02239 * 1 2 3 29 29 H 1.09010 * 109.47011 * 150.01850 * 1 2 3 30 30 H 1.08001 * 119.97013 * 359.95812 * 3 2 1 31 31 H 1.07995 * 119.97492 * 180.02562 * 6 4 3 32 32 H 1.08004 * 120.02623 * 180.31733 * 7 6 4 33 33 H 0.96997 * 119.99550 * 184.99773 * 13 12 10 34 34 H 1.09005 * 109.47222 * 295.14308 * 20 18 9 35 35 H 1.09002 * 109.46999 * 55.13855 * 20 18 9 36 36 H 1.09000 * 109.47228 * 300.00013 * 21 20 18 37 37 H 1.09002 * 109.47041 * 60.00141 * 21 20 18 38 38 H 1.08001 * 125.88480 * 359.96588 * 23 22 21 39 39 H 1.07999 * 126.29425 * 180.15795 * 24 23 22 40 40 H 1.07995 * 126.29199 * 179.73427 * 25 24 23 41 41 H 1.08008 * 125.88821 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1955 0.0000 4 6 3.5830 1.1961 0.0005 5 9 4.2568 2.3671 0.0011 6 6 4.2784 -0.0020 0.0005 7 6 3.5919 -1.1997 0.0067 8 6 2.2022 -1.2029 0.0005 9 7 1.5047 -2.4149 0.0005 10 6 1.1632 -3.0094 -1.1870 11 1 0.5467 -3.8962 -1.1893 12 6 1.6099 -2.4711 -2.3868 13 7 2.2591 -1.3283 -2.3931 14 14 1.2883 -3.3714 -3.9916 15 1 -0.1757 -3.5228 -4.1895 16 1 1.8628 -2.5941 -5.1190 17 1 1.9225 -4.7133 -3.9421 18 6 1.1680 -2.9987 1.1678 19 8 1.3825 -2.4271 2.2157 20 6 0.5194 -4.3590 1.1704 21 6 0.3528 -4.8417 2.6126 22 7 -0.2783 -6.1638 2.6152 23 6 -1.6194 -6.4039 2.6667 24 6 -1.8099 -7.7387 2.6469 25 6 -0.5394 -8.3452 2.5908 26 6 0.3788 -7.3577 2.5725 27 1 -0.3633 0.0003 1.0276 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5136 30 1 1.6580 2.1308 -0.0007 31 1 5.3583 0.0009 0.0014 32 1 4.1345 -2.1336 0.0119 33 1 2.5074 -0.9163 -3.2353 34 1 -0.4585 -4.2962 0.6929 35 1 1.1469 -5.0618 0.6223 36 1 1.3307 -4.9046 3.0901 37 1 -0.2747 -4.1390 3.1608 38 1 -2.3954 -5.6541 2.7130 39 1 -2.7612 -8.2492 2.6740 40 1 -0.3379 -9.4060 2.5668 41 1 1.4499 -7.4898 2.5307 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602386954.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:29 Heat of formation + Delta-G solvation = 6.693243 kcal Electronic energy + Delta-G solvation = -26253.576153 eV Core-core repulsion = 22435.371937 eV Total energy + Delta-G solvation = -3818.204217 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.10410 -40.90673 -39.69225 -37.50004 -34.92484 -33.59197 -31.93090 -31.69293 -29.75618 -28.57465 -28.37510 -26.30811 -25.08171 -23.90978 -21.76013 -20.81584 -20.25381 -19.72781 -19.36460 -17.84791 -17.36875 -16.36026 -15.97009 -15.85449 -15.00148 -14.85009 -14.79093 -14.60337 -14.27382 -13.68868 -13.43889 -13.18920 -13.02419 -12.70734 -12.65516 -12.42811 -12.40107 -12.12253 -11.97684 -11.88717 -11.66783 -11.56039 -11.32020 -11.14211 -10.83932 -10.80758 -10.58948 -10.55267 -10.34872 -9.59021 -8.90666 -8.38493 -8.27582 -7.96898 -7.91951 -7.69034 -6.24493 -4.20092 2.19734 2.24468 2.49977 2.98097 3.08341 3.10023 3.17880 3.23686 3.51288 3.87968 4.43385 4.58015 4.89046 5.04494 5.12434 5.24600 5.26930 5.41064 5.58760 5.61721 5.65170 5.71020 5.78435 5.93321 5.98945 6.06973 6.20161 6.24547 6.35810 6.36795 6.44314 6.51240 6.56617 6.70564 6.95484 7.02990 7.11655 7.18886 7.20315 7.40030 7.46076 7.57719 7.60441 7.79996 8.21303 8.80020 9.13574 9.54843 10.44165 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013991 B = 0.004221 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.792924 B = 6632.445127 C = 7824.865190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.044 4.044 3 C -0.149 4.149 4 C 0.065 3.935 5 F -0.159 7.159 6 C -0.150 4.150 7 C -0.069 4.069 8 C 0.255 3.745 9 N -0.411 5.411 10 C -0.348 4.348 11 H 0.106 0.894 12 C 0.041 3.959 13 N -0.850 5.850 14 Si 0.926 3.074 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.465 3.535 19 O -0.596 6.596 20 C -0.132 4.132 21 C 0.120 3.880 22 N -0.442 5.442 23 C -0.014 4.014 24 C -0.210 4.210 25 C -0.210 4.210 26 C -0.014 4.014 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.275 0.725 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.158 0.842 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.924 -4.345 3.682 6.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.046 4.046 3 C -0.168 4.168 4 C 0.045 3.955 5 F -0.138 7.138 6 C -0.170 4.170 7 C -0.089 4.089 8 C 0.163 3.837 9 N -0.127 5.127 10 C -0.474 4.474 11 H 0.124 0.876 12 C -0.166 4.166 13 N -0.486 5.486 14 Si 0.752 3.248 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.197 1.197 18 C 0.255 3.745 19 O -0.482 6.482 20 C -0.173 4.173 21 C -0.001 4.001 22 N -0.116 5.116 23 C -0.145 4.145 24 C -0.235 4.235 25 C -0.235 4.235 26 C -0.144 4.144 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.175 0.825 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.481 -3.569 3.995 5.904 hybrid contribution 0.053 -0.176 -1.383 1.395 sum -2.428 -3.744 2.612 5.171 Atomic orbital electron populations 1.20600 0.91787 1.02637 1.00875 1.19452 0.95566 0.91483 0.98080 1.20491 0.91923 0.97999 1.06391 1.17406 0.90023 0.80504 1.07527 1.91378 1.80761 1.46924 1.94754 1.20550 0.99102 0.91227 1.06112 1.20632 0.93400 0.96483 0.98373 1.16770 0.89702 0.84799 0.92405 1.41325 1.48324 1.17307 1.05706 1.19707 1.33199 1.12477 0.82004 0.87587 1.25286 0.95381 0.96121 0.99789 1.69833 1.35971 1.15193 1.27613 0.85996 0.78835 0.79327 0.80664 1.19775 1.20679 1.19694 1.19780 0.83811 0.87756 0.83200 1.90603 1.60223 1.66192 1.31213 1.21691 1.02916 0.96377 0.96300 1.21654 0.99772 0.80880 0.97816 1.44342 1.06158 1.06318 1.54821 1.21837 0.84900 0.97419 1.10299 1.20827 0.97818 0.93105 1.11719 1.20826 0.92744 0.98182 1.11717 1.21847 0.98205 0.84144 1.10235 0.92468 0.92863 0.90440 0.86513 0.86526 0.86984 0.91242 0.89267 0.89052 0.88931 0.88733 0.82503 0.85215 0.85214 0.82494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.01 9.77 36.00 0.35 -1.66 16 2 C -0.04 -0.96 5.20 -104.42 -0.54 -1.50 16 3 C -0.15 -3.05 9.67 -39.54 -0.38 -3.43 16 4 C 0.06 1.33 7.30 -39.38 -0.29 1.04 16 5 F -0.16 -3.11 17.26 2.25 0.04 -3.07 16 6 C -0.15 -3.07 10.02 -39.54 -0.40 -3.47 16 7 C -0.07 -1.53 8.90 -39.38 -0.35 -1.88 16 8 C 0.25 5.84 2.19 -83.68 -0.18 5.65 16 9 N -0.41 -9.21 1.78 -58.97 -0.11 -9.31 16 10 C -0.35 -7.81 8.69 -14.94 -0.13 -7.94 16 11 H 0.11 2.23 6.38 -52.48 -0.33 1.89 16 12 C 0.04 0.94 5.44 -17.48 -0.10 0.84 16 13 N -0.85 -20.28 9.38 55.49 0.52 -19.76 16 14 Si 0.93 18.22 29.56 -169.99 -5.02 13.20 16 15 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 16 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 17 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 18 C 0.47 9.78 7.58 -10.98 -0.08 9.69 16 19 O -0.60 -13.86 15.96 5.56 0.09 -13.77 16 20 C -0.13 -2.22 4.42 -27.88 -0.12 -2.35 16 21 C 0.12 1.79 5.39 -4.05 -0.02 1.77 16 22 N -0.44 -6.30 2.75 -117.13 -0.32 -6.63 16 23 C -0.01 -0.19 11.43 -16.75 -0.19 -0.38 16 24 C -0.21 -2.79 10.86 -39.78 -0.43 -3.23 16 25 C -0.21 -2.80 10.86 -39.78 -0.43 -3.23 16 26 C -0.01 -0.19 11.43 -16.75 -0.19 -0.38 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 29 H 0.08 1.64 6.92 -51.92 -0.36 1.28 16 30 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 31 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 32 H 0.11 2.41 8.06 -52.48 -0.42 1.99 16 33 H 0.28 6.48 8.32 -40.82 -0.34 6.14 16 34 H 0.09 1.47 7.87 -51.93 -0.41 1.06 16 35 H 0.09 1.53 7.95 -51.93 -0.41 1.12 16 36 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.09 1.40 8.04 -51.93 -0.42 0.99 16 38 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.16 1.82 8.06 -52.48 -0.42 1.39 16 LS Contribution 353.44 15.07 5.33 5.33 Total: -1.00 -26.59 353.44 -8.26 -34.85 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -5.29 Total: 9.62 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -3.49 Total: -10.46 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.09 Total: -35.70 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.09 Total: -13.77 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.04 Total: -3.07 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.02 Total: 13.20 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -26.59 -8.26 -34.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602386954.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.547 kcal (2) G-P(sol) polarization free energy of solvation -26.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds