Wall clock time and date at job start Tue Mar 31 2020 10:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38087 * 120.02904 * 2 1 4 4 C 1.38497 * 120.05512 * 179.97438 * 3 2 1 5 5 F 1.35098 * 119.94669 * 180.02562 * 4 3 2 6 6 C 1.38534 * 120.10417 * 0.02562 * 4 3 2 7 7 C 1.38050 * 120.05153 * 359.68010 * 6 4 3 8 8 C 1.38937 * 120.02580 * 179.97438 * 2 1 3 9 9 N 1.39831 * 120.05374 * 0.02562 * 8 2 1 10 10 C 1.37124 * 120.00117 * 90.00201 * 9 8 2 11 11 H 1.08003 * 120.00278 * 185.64315 * 10 9 8 12 12 C 1.38885 * 120.00203 * 5.63474 * 10 9 8 13 13 N 1.31433 * 119.99536 * 353.97848 * 12 10 9 14 14 Si 1.86791 * 120.00262 * 173.97129 * 12 10 9 15 15 H 1.48502 * 109.47236 * 60.00679 * 14 12 10 16 16 H 1.48503 * 109.47160 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47241 * 300.00683 * 14 12 10 18 18 C 1.34782 * 120.00165 * 270.00342 * 9 8 2 19 19 O 1.21276 * 119.99763 * 5.39060 * 18 9 8 20 20 C 1.50703 * 120.00160 * 185.11501 * 18 9 8 21 21 C 1.52996 * 109.47220 * 175.13740 * 20 18 9 22 22 N 1.46497 * 109.47143 * 179.97438 * 21 20 18 23 23 C 1.36338 * 125.64048 * 269.69449 * 22 21 20 24 24 C 1.34851 * 108.22154 * 179.82910 * 23 22 21 25 25 C 1.40893 * 107.41634 * 0.42745 * 24 23 22 26 26 C 1.34851 * 107.41367 * 359.73664 * 25 24 23 27 27 H 1.08995 * 109.47194 * 270.01676 * 1 2 3 28 28 H 1.09004 * 109.47238 * 30.02239 * 1 2 3 29 29 H 1.09010 * 109.47011 * 150.01850 * 1 2 3 30 30 H 1.08001 * 119.97013 * 359.95812 * 3 2 1 31 31 H 1.07995 * 119.97492 * 180.02562 * 6 4 3 32 32 H 1.08004 * 120.02623 * 180.31733 * 7 6 4 33 33 H 0.96997 * 119.99550 * 184.99773 * 13 12 10 34 34 H 1.09005 * 109.47222 * 295.14308 * 20 18 9 35 35 H 1.09002 * 109.46999 * 55.13855 * 20 18 9 36 36 H 1.09000 * 109.47228 * 300.00013 * 21 20 18 37 37 H 1.09002 * 109.47041 * 60.00141 * 21 20 18 38 38 H 1.08001 * 125.88480 * 359.96588 * 23 22 21 39 39 H 1.07999 * 126.29425 * 180.15795 * 24 23 22 40 40 H 1.07995 * 126.29199 * 179.73427 * 25 24 23 41 41 H 1.08008 * 125.88821 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1955 0.0000 4 6 3.5830 1.1961 0.0005 5 9 4.2568 2.3671 0.0011 6 6 4.2784 -0.0020 0.0005 7 6 3.5919 -1.1997 0.0067 8 6 2.2022 -1.2029 0.0005 9 7 1.5047 -2.4149 0.0005 10 6 1.1632 -3.0094 -1.1870 11 1 0.5467 -3.8962 -1.1893 12 6 1.6099 -2.4711 -2.3868 13 7 2.2591 -1.3283 -2.3931 14 14 1.2883 -3.3714 -3.9916 15 1 -0.1757 -3.5228 -4.1895 16 1 1.8628 -2.5941 -5.1190 17 1 1.9225 -4.7133 -3.9421 18 6 1.1680 -2.9987 1.1678 19 8 1.3825 -2.4271 2.2157 20 6 0.5194 -4.3590 1.1704 21 6 0.3528 -4.8417 2.6126 22 7 -0.2783 -6.1638 2.6152 23 6 -1.6194 -6.4039 2.6667 24 6 -1.8099 -7.7387 2.6469 25 6 -0.5394 -8.3452 2.5908 26 6 0.3788 -7.3577 2.5725 27 1 -0.3633 0.0003 1.0276 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5136 30 1 1.6580 2.1308 -0.0007 31 1 5.3583 0.0009 0.0014 32 1 4.1345 -2.1336 0.0119 33 1 2.5074 -0.9163 -3.2353 34 1 -0.4585 -4.2962 0.6929 35 1 1.1469 -5.0618 0.6223 36 1 1.3307 -4.9046 3.0901 37 1 -0.2747 -4.1390 3.1608 38 1 -2.3954 -5.6541 2.7130 39 1 -2.7612 -8.2492 2.6740 40 1 -0.3379 -9.4060 2.5668 41 1 1.4499 -7.4898 2.5307 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602386954.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:29 Heat of formation + Delta-G solvation = -2.354658 kcal Electronic energy + Delta-G solvation = -26253.968500 eV Core-core repulsion = 22435.371937 eV Total energy + Delta-G solvation = -3818.596563 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.68905 -41.98321 -41.30927 -39.12544 -36.60437 -34.84565 -33.61149 -33.34997 -31.16389 -29.83133 -29.58392 -27.90538 -26.76454 -25.26225 -23.34264 -22.40616 -21.27693 -21.09149 -20.72892 -19.46368 -18.62979 -17.96175 -17.47780 -17.41694 -16.71993 -16.37851 -16.25914 -16.06815 -15.65951 -14.98758 -14.94034 -14.58129 -14.43957 -14.21612 -14.14043 -13.85200 -13.78237 -13.67685 -13.25474 -13.07872 -12.99708 -12.90843 -12.85160 -12.68801 -12.44326 -12.21756 -12.15749 -12.13204 -11.97055 -11.25872 -10.57785 -9.99786 -9.56819 -9.47242 -9.33897 -8.99663 -7.95103 -5.95521 0.55441 0.59981 1.41134 1.43966 1.49122 1.55402 1.87911 2.03641 2.22432 2.27742 2.89165 2.92496 3.17975 3.50542 3.83951 3.95699 3.99187 4.07815 4.14899 4.32563 4.36482 4.45327 4.55169 4.58644 4.64585 4.76213 4.80647 4.82445 4.88380 4.93523 4.95800 5.07201 5.33146 5.39507 5.41952 5.45906 5.49791 5.53659 5.72422 5.92384 6.14907 6.18369 6.43270 6.50937 6.55317 7.07444 7.45663 7.86380 8.71002 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013991 B = 0.004221 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.792924 B = 6632.445127 C = 7824.865190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.064 4.064 3 C -0.150 4.150 4 C 0.058 3.942 5 F -0.153 7.153 6 C -0.149 4.149 7 C -0.089 4.089 8 C 0.235 3.765 9 N -0.419 5.419 10 C -0.356 4.356 11 H 0.117 0.883 12 C 0.005 3.995 13 N -0.870 5.870 14 Si 0.983 3.017 15 H -0.267 1.267 16 H -0.290 1.290 17 H -0.270 1.270 18 C 0.460 3.540 19 O -0.622 6.622 20 C -0.118 4.118 21 C 0.133 3.867 22 N -0.449 5.449 23 C -0.028 4.028 24 C -0.219 4.219 25 C -0.218 4.218 26 C -0.029 4.029 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.107 0.893 33 H 0.269 0.731 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.174 0.826 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.594 -4.959 3.473 7.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.066 4.066 3 C -0.170 4.170 4 C 0.039 3.961 5 F -0.132 7.132 6 C -0.169 4.169 7 C -0.108 4.108 8 C 0.144 3.856 9 N -0.135 5.135 10 C -0.481 4.481 11 H 0.135 0.865 12 C -0.200 4.200 13 N -0.507 5.507 14 Si 0.808 3.192 15 H -0.192 1.192 16 H -0.216 1.216 17 H -0.195 1.195 18 C 0.251 3.749 19 O -0.510 6.510 20 C -0.159 4.159 21 C 0.011 3.989 22 N -0.124 5.124 23 C -0.158 4.158 24 C -0.243 4.243 25 C -0.243 4.243 26 C -0.159 4.159 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.125 0.875 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.191 0.809 39 H 0.166 0.834 40 H 0.165 0.835 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -3.162 -4.203 3.794 6.485 hybrid contribution 0.271 0.015 -1.270 1.298 sum -2.891 -4.188 2.525 5.681 Atomic orbital electron populations 1.20530 0.90656 1.02692 1.01164 1.19751 0.96661 0.91652 0.98514 1.20771 0.92168 0.98625 1.05391 1.17496 0.90280 0.80777 1.07576 1.91391 1.80617 1.46450 1.94710 1.20783 1.00354 0.90713 1.05031 1.20731 0.93539 0.96971 0.99602 1.17076 0.90211 0.85496 0.92818 1.41515 1.48409 1.17464 1.06122 1.20012 1.33193 1.12746 0.82163 0.86501 1.25936 0.95329 0.96602 1.02090 1.69979 1.36955 1.16224 1.27501 0.85112 0.78697 0.78099 0.77293 1.19237 1.21552 1.19486 1.20446 0.83182 0.88816 0.82464 1.90574 1.61194 1.67222 1.31991 1.21583 1.02584 0.93837 0.97858 1.21430 0.99828 0.81398 0.96270 1.44346 1.06542 1.06027 1.55518 1.22252 0.84997 0.98231 1.10275 1.21170 0.98688 0.93204 1.11237 1.21167 0.92778 0.99130 1.11208 1.22243 0.99232 0.84054 1.10365 0.91978 0.90811 0.92272 0.84183 0.84227 0.87474 0.91974 0.88688 0.88847 0.89094 0.88822 0.80892 0.83444 0.83499 0.81044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.63 9.77 71.23 0.70 -2.93 16 2 C -0.06 -2.78 5.20 -19.73 -0.10 -2.88 16 3 C -0.15 -6.02 9.67 22.30 0.22 -5.81 16 4 C 0.06 2.33 7.30 22.40 0.16 2.49 16 5 F -0.15 -5.74 17.26 44.97 0.78 -4.97 16 6 C -0.15 -6.03 10.02 22.30 0.22 -5.81 16 7 C -0.09 -3.95 8.90 22.40 0.20 -3.75 16 8 C 0.24 10.83 2.19 38.21 0.08 10.92 16 9 N -0.42 -18.84 1.78 -458.87 -0.82 -19.66 16 10 C -0.36 -15.82 8.69 84.02 0.73 -15.09 16 11 H 0.12 4.80 6.38 -2.91 -0.02 4.78 16 12 C 0.00 0.21 5.44 84.91 0.46 0.67 16 13 N -0.87 -41.52 9.38 21.65 0.20 -41.32 16 14 Si 0.98 36.90 29.56 68.60 2.03 38.93 16 15 H -0.27 -9.74 7.11 99.48 0.71 -9.04 16 16 H -0.29 -11.18 7.11 99.48 0.71 -10.47 16 17 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 18 C 0.46 19.34 7.58 87.66 0.66 20.00 16 19 O -0.62 -29.09 15.96 -3.02 -0.05 -29.14 16 20 C -0.12 -3.89 4.42 29.85 0.13 -3.76 16 21 C 0.13 3.84 5.39 86.38 0.47 4.30 16 22 N -0.45 -12.21 2.75 -524.48 -1.44 -13.65 16 23 C -0.03 -0.71 11.43 83.21 0.95 0.24 16 24 C -0.22 -5.39 10.86 22.14 0.24 -5.15 16 25 C -0.22 -5.42 10.86 22.14 0.24 -5.18 16 26 C -0.03 -0.75 11.43 83.21 0.95 0.20 16 27 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.07 2.48 8.09 -2.39 -0.02 2.46 16 29 H 0.06 2.48 6.92 -2.38 -0.02 2.47 16 30 H 0.14 4.81 8.06 -2.91 -0.02 4.78 16 31 H 0.14 4.82 8.06 -2.91 -0.02 4.80 16 32 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 33 H 0.27 12.71 8.32 -92.71 -0.77 11.94 16 34 H 0.09 3.02 7.87 -2.38 -0.02 3.00 16 35 H 0.09 3.04 7.95 -2.39 -0.02 3.02 16 36 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 37 H 0.09 2.72 8.04 -2.39 -0.02 2.70 16 38 H 0.17 3.66 8.06 -2.91 -0.02 3.63 16 39 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 40 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 41 H 0.17 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -55.31 353.44 8.05 -47.25 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: 1.04 Total: 34.08 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 6.32 Total: -11.52 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -2.06 Total: -74.64 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.05 Total: -29.14 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 0.78 Total: -4.97 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal Total: -55.31 8.05 -47.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602386954.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.899 kcal (2) G-P(sol) polarization free energy of solvation -55.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds