Wall clock time and date at job start Tue Mar 31 2020 11:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.28801 * 124.75123 * 2 1 4 4 C 1.32523 * 117.11974 * 179.97438 * 3 2 1 5 5 C 1.48350 * 122.96129 * 180.02562 * 4 3 2 6 6 C 1.39430 * 120.08681 * 180.02562 * 5 4 3 7 7 C 1.38040 * 120.02392 * 179.97438 * 6 5 4 8 8 C 1.38215 * 120.20016 * 359.71897 * 7 6 5 9 9 C 1.38970 * 120.17591 * 0.55876 * 8 7 6 10 10 N 1.39694 * 120.01362 * 179.72395 * 9 8 7 11 11 C 1.46493 * 120.00170 * 359.72179 * 10 9 8 12 12 C 1.52998 * 109.47217 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.47104 * 55.00421 * 12 11 10 14 14 C 1.52998 * 109.47026 * 294.99617 * 12 11 10 15 15 C 1.53002 * 109.46886 * 174.99768 * 12 11 10 16 16 C 1.50706 * 109.47153 * 184.99546 * 15 12 11 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 12 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 12 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72576 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72423 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72459 * 20 18 16 24 24 C 1.38714 * 119.97350 * 359.44492 * 9 8 7 25 25 C 1.34832 * 114.07526 * 0.27575 * 4 3 2 26 26 S 1.70906 * 124.75463 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47572 * 89.99488 * 1 2 3 28 28 H 1.09004 * 109.47018 * 209.99472 * 1 2 3 29 29 H 1.09000 * 109.47149 * 329.99666 * 1 2 3 30 30 H 1.08001 * 119.98523 * 359.97438 * 6 5 4 31 31 H 1.08001 * 119.89756 * 180.02562 * 7 6 5 32 32 H 1.08000 * 119.91302 * 180.30565 * 8 7 6 33 33 H 0.97003 * 119.99914 * 179.73090 * 10 9 8 34 34 H 1.09001 * 109.47299 * 60.00402 * 11 10 9 35 35 H 1.09002 * 109.47069 * 300.00569 * 11 10 9 36 36 H 1.09003 * 109.46843 * 179.97438 * 14 12 11 37 37 H 1.08990 * 109.47503 * 300.00380 * 14 12 11 38 38 H 1.09001 * 109.46970 * 60.00396 * 14 12 11 39 39 H 1.09004 * 109.47178 * 65.00336 * 15 12 11 40 40 H 1.08993 * 109.47411 * 305.00018 * 15 12 11 41 41 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 42 42 H 1.08004 * 120.10191 * 180.25529 * 24 9 8 43 43 H 1.08001 * 126.06321 * 179.72385 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2412 1.0583 0.0000 4 6 3.5547 0.8823 0.0005 5 6 4.5200 2.0088 0.0012 6 6 5.8909 1.7545 0.0011 7 6 6.7880 2.8037 0.0012 8 6 6.3318 4.1084 -0.0046 9 6 4.9672 4.3714 0.0012 10 7 4.5100 5.6914 0.0011 11 6 5.4690 6.7988 0.0011 12 6 4.7125 8.1286 0.0016 13 1 4.0208 8.1528 0.8437 14 6 3.9301 8.2708 -1.3055 15 6 5.7094 9.2824 0.1274 16 6 4.9590 10.5835 0.2514 17 1 3.8791 10.5869 0.2419 18 6 5.6510 11.7693 0.3769 19 7 6.9661 11.7646 0.3939 20 14 4.7209 13.3819 0.5313 21 1 4.4924 13.9528 -0.8204 22 1 3.4140 13.1381 1.1930 23 1 5.5167 14.3366 1.3439 24 6 4.0594 3.3227 0.0012 25 6 3.9364 -0.4109 -0.0049 26 16 2.4813 -1.4042 -0.0006 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 6.2511 0.7364 0.0011 31 1 7.8494 2.6045 0.0008 32 1 7.0378 4.9258 -0.0095 33 1 3.5574 5.8747 0.0012 34 1 6.0953 6.7371 -0.8889 35 1 6.0953 6.7371 0.8911 36 1 3.3907 9.2181 -1.3048 37 1 4.6218 8.2467 -2.1474 38 1 3.2199 7.4488 -1.3950 39 1 6.3443 9.3123 -0.7582 40 1 6.3275 9.1337 1.0127 41 1 7.4492 10.9272 0.3140 42 1 2.9984 3.5247 0.0015 43 1 4.9537 -0.7735 -0.0097 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602429117.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:51 Heat of formation + Delta-G solvation = 44.508199 kcal Electronic energy + Delta-G solvation = -22382.223130 eV Core-core repulsion = 19131.871869 eV Total energy + Delta-G solvation = -3250.351261 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.36680 -38.99117 -36.74214 -34.32342 -32.94562 -32.10971 -30.57804 -29.36185 -27.94679 -26.56606 -25.83546 -24.40361 -22.87162 -22.42631 -21.23097 -19.77424 -19.52957 -18.10861 -16.98745 -16.77825 -16.00784 -15.39692 -15.30632 -15.17911 -14.63337 -14.21028 -13.87112 -13.74779 -13.60737 -13.41297 -13.31128 -13.26001 -12.95856 -12.56388 -12.28726 -12.02885 -11.84220 -11.65101 -11.34567 -11.16584 -10.99079 -10.80694 -10.42040 -10.21880 -10.12219 -9.93026 -9.87285 -9.71850 -9.62659 -9.50446 -8.54976 -8.34010 -8.27716 -7.23675 -6.36855 -4.05913 0.27141 1.03712 1.30528 1.40424 1.67249 2.77947 3.42478 3.45993 3.61378 3.65238 3.71540 4.04128 4.53429 4.55948 4.81835 4.90962 4.97546 5.05712 5.16226 5.25200 5.30983 5.38733 5.43053 5.48898 5.58260 5.63047 5.74175 5.80092 5.83859 6.07331 6.10610 6.27333 6.31609 6.40001 6.53011 6.62289 6.69977 6.85201 6.89925 6.95431 7.31750 7.47003 7.48372 7.54515 7.93424 8.19319 8.45047 8.87377 9.65546 11.03644 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.025268 B = 0.002116 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.839572 B =13226.562965 C =14179.105209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.052 3.948 3 N -0.463 5.463 4 C 0.119 3.881 5 C 0.016 3.984 6 C -0.170 4.170 7 C -0.072 4.072 8 C -0.191 4.191 9 C 0.222 3.778 10 N -0.740 5.740 11 C 0.126 3.874 12 C -0.089 4.089 13 H 0.063 0.937 14 C -0.131 4.131 15 C 0.017 3.983 16 C -0.596 4.596 17 H 0.050 0.950 18 C 0.013 3.987 19 N -0.914 5.914 20 Si 1.070 2.930 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.284 1.284 24 C -0.166 4.166 25 C -0.253 4.253 26 S 0.113 5.887 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.399 0.601 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.045 0.955 38 H 0.032 0.968 39 H 0.009 0.991 40 H 0.008 0.992 41 H 0.269 0.731 42 H 0.127 0.873 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.403 -28.213 -1.403 29.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.228 4.228 3 N -0.177 5.177 4 C -0.011 4.011 5 C 0.012 3.988 6 C -0.192 4.192 7 C -0.090 4.090 8 C -0.214 4.214 9 C 0.117 3.883 10 N -0.367 5.367 11 C 0.002 3.998 12 C -0.108 4.108 13 H 0.082 0.918 14 C -0.189 4.189 15 C -0.021 4.021 16 C -0.635 4.635 17 H 0.068 0.932 18 C -0.190 4.190 19 N -0.550 5.550 20 Si 0.899 3.101 21 H -0.215 1.215 22 H -0.215 1.215 23 H -0.210 1.210 24 C -0.190 4.190 25 C -0.392 4.392 26 S 0.367 5.633 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.134 0.866 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.234 0.766 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.028 0.972 40 H 0.026 0.974 41 H 0.079 0.921 42 H 0.145 0.855 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -8.559 -26.988 -1.227 28.339 hybrid contribution 0.160 -0.917 -0.193 0.950 sum -8.399 -27.905 -1.419 29.176 Atomic orbital electron populations 1.20476 0.85021 1.04351 1.04043 1.26991 1.01875 0.90822 1.03064 1.66152 1.04383 1.31388 1.15813 1.18891 0.88783 0.92129 1.01287 1.17653 0.90861 0.89975 1.00285 1.20723 0.91481 0.98854 1.08108 1.20730 0.99099 0.91812 0.97399 1.20808 0.93770 0.97418 1.09392 1.17824 0.92730 0.84949 0.92841 1.44986 1.09033 1.01983 1.80717 1.21628 0.91840 0.85879 1.00443 1.21294 0.98525 0.93076 0.97890 0.91824 1.21709 0.99250 1.00823 0.97085 1.19211 0.94121 0.92693 0.96053 1.22017 0.94258 0.92363 1.54821 0.93152 1.25831 0.96540 1.02688 0.93973 1.70755 1.06978 1.30665 1.46627 0.83523 0.74670 0.75160 0.76774 1.21493 1.21527 1.21021 1.20604 0.99247 0.90546 1.08600 1.27001 1.03079 0.95560 1.13540 1.83882 0.97741 1.12812 1.68820 0.89454 0.90035 0.89091 0.86604 0.85970 0.85838 0.76641 0.92652 0.92633 0.91636 0.93556 0.94898 0.97236 0.97377 0.92098 0.85482 0.80289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.46 36.01 0.38 -0.09 16 2 C 0.05 0.49 7.36 -13.55 -0.10 0.39 16 3 N -0.46 -5.81 9.92 -8.43 -0.08 -5.89 16 4 C 0.12 1.48 6.65 -84.62 -0.56 0.92 16 5 C 0.02 0.21 5.87 -104.92 -0.62 -0.41 16 6 C -0.17 -2.00 9.48 -39.21 -0.37 -2.37 16 7 C -0.07 -0.86 10.03 -39.66 -0.40 -1.25 16 8 C -0.19 -2.65 9.31 -39.32 -0.37 -3.01 16 9 C 0.22 3.28 6.65 -83.83 -0.56 2.72 16 10 N -0.74 -11.19 5.46 -58.67 -0.32 -11.51 16 11 C 0.13 2.12 4.30 -4.05 -0.02 2.11 16 12 C -0.09 -1.75 2.37 -90.62 -0.22 -1.97 16 13 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 14 C -0.13 -2.43 8.88 37.16 0.33 -2.10 16 15 C 0.02 0.41 3.76 -27.88 -0.10 0.31 16 16 C -0.60 -16.56 8.41 -34.44 -0.29 -16.85 16 17 H 0.05 1.38 7.06 -52.49 -0.37 1.01 16 18 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 19 N -0.91 -27.84 13.65 55.43 0.76 -27.08 16 20 Si 1.07 25.27 29.90 -169.99 -5.08 20.19 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 C -0.17 -2.38 9.48 -39.04 -0.37 -2.75 16 25 C -0.25 -2.46 10.63 29.52 0.31 -2.14 16 26 S 0.11 0.89 23.16 -107.50 -2.49 -1.60 16 27 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.12 1.05 6.66 -52.49 -0.35 0.70 16 31 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.12 1.69 6.72 -52.49 -0.35 1.34 16 33 H 0.40 5.70 7.66 -40.82 -0.31 5.39 16 34 H 0.06 0.94 7.93 -51.93 -0.41 0.52 16 35 H 0.06 0.95 7.96 -51.93 -0.41 0.54 16 36 H 0.06 1.31 6.95 -51.93 -0.36 0.95 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.03 0.51 7.18 -51.93 -0.37 0.14 16 39 H 0.01 0.24 8.01 -51.93 -0.42 -0.17 16 40 H 0.01 0.21 8.00 -51.93 -0.42 -0.21 16 41 H 0.27 8.13 7.22 -40.82 -0.29 7.83 16 42 H 0.13 1.82 7.70 -52.48 -0.40 1.42 16 43 H 0.18 1.32 6.89 -52.49 -0.36 0.96 16 LS Contribution 367.20 15.07 5.53 5.53 Total: -1.00 -31.77 367.20 -10.90 -42.67 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -6.17 Total: 3.91 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: -3.05 Total: -26.21 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.35 Total: -44.48 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -5.08 Total: 20.19 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -2.49 Total: -1.60 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.77 -10.90 -42.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602429117.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.174 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds