Wall clock time and date at job start Tue Mar 31 2020 11:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.28801 * 124.75123 * 2 1 4 4 C 1.32523 * 117.11974 * 179.97438 * 3 2 1 5 5 C 1.48350 * 122.96129 * 180.02562 * 4 3 2 6 6 C 1.39430 * 120.08681 * 180.02562 * 5 4 3 7 7 C 1.38040 * 120.02392 * 179.97438 * 6 5 4 8 8 C 1.38215 * 120.20016 * 359.71897 * 7 6 5 9 9 C 1.38970 * 120.17591 * 0.55876 * 8 7 6 10 10 N 1.39694 * 120.01362 * 179.72395 * 9 8 7 11 11 C 1.46493 * 120.00170 * 359.72179 * 10 9 8 12 12 C 1.52998 * 109.47217 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.47104 * 55.00421 * 12 11 10 14 14 C 1.52998 * 109.47026 * 294.99617 * 12 11 10 15 15 C 1.53002 * 109.46886 * 174.99768 * 12 11 10 16 16 C 1.50706 * 109.47153 * 184.99546 * 15 12 11 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 12 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 12 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72576 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72423 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72459 * 20 18 16 24 24 C 1.38714 * 119.97350 * 359.44492 * 9 8 7 25 25 C 1.34832 * 114.07526 * 0.27575 * 4 3 2 26 26 S 1.70906 * 124.75463 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47572 * 89.99488 * 1 2 3 28 28 H 1.09004 * 109.47018 * 209.99472 * 1 2 3 29 29 H 1.09000 * 109.47149 * 329.99666 * 1 2 3 30 30 H 1.08001 * 119.98523 * 359.97438 * 6 5 4 31 31 H 1.08001 * 119.89756 * 180.02562 * 7 6 5 32 32 H 1.08000 * 119.91302 * 180.30565 * 8 7 6 33 33 H 0.97003 * 119.99914 * 179.73090 * 10 9 8 34 34 H 1.09001 * 109.47299 * 60.00402 * 11 10 9 35 35 H 1.09002 * 109.47069 * 300.00569 * 11 10 9 36 36 H 1.09003 * 109.46843 * 179.97438 * 14 12 11 37 37 H 1.08990 * 109.47503 * 300.00380 * 14 12 11 38 38 H 1.09001 * 109.46970 * 60.00396 * 14 12 11 39 39 H 1.09004 * 109.47178 * 65.00336 * 15 12 11 40 40 H 1.08993 * 109.47411 * 305.00018 * 15 12 11 41 41 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 42 42 H 1.08004 * 120.10191 * 180.25529 * 24 9 8 43 43 H 1.08001 * 126.06321 * 179.72385 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2412 1.0583 0.0000 4 6 3.5547 0.8823 0.0005 5 6 4.5200 2.0088 0.0012 6 6 5.8909 1.7545 0.0011 7 6 6.7880 2.8037 0.0012 8 6 6.3318 4.1084 -0.0046 9 6 4.9672 4.3714 0.0012 10 7 4.5100 5.6914 0.0011 11 6 5.4690 6.7988 0.0011 12 6 4.7125 8.1286 0.0016 13 1 4.0208 8.1528 0.8437 14 6 3.9301 8.2708 -1.3055 15 6 5.7094 9.2824 0.1274 16 6 4.9590 10.5835 0.2514 17 1 3.8791 10.5869 0.2419 18 6 5.6510 11.7693 0.3769 19 7 6.9661 11.7646 0.3939 20 14 4.7209 13.3819 0.5313 21 1 4.4924 13.9528 -0.8204 22 1 3.4140 13.1381 1.1930 23 1 5.5167 14.3366 1.3439 24 6 4.0594 3.3227 0.0012 25 6 3.9364 -0.4109 -0.0049 26 16 2.4813 -1.4042 -0.0006 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 6.2511 0.7364 0.0011 31 1 7.8494 2.6045 0.0008 32 1 7.0378 4.9258 -0.0095 33 1 3.5574 5.8747 0.0012 34 1 6.0953 6.7371 -0.8889 35 1 6.0953 6.7371 0.8911 36 1 3.3907 9.2181 -1.3048 37 1 4.6218 8.2467 -2.1474 38 1 3.2199 7.4488 -1.3950 39 1 6.3443 9.3123 -0.7582 40 1 6.3275 9.1337 1.0127 41 1 7.4492 10.9272 0.3140 42 1 2.9984 3.5247 0.0015 43 1 4.9537 -0.7735 -0.0097 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602429117.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:50 Heat of formation + Delta-G solvation = 27.185309 kcal Electronic energy + Delta-G solvation = -22382.974307 eV Core-core repulsion = 19131.871869 eV Total energy + Delta-G solvation = -3251.102438 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.19956 -39.99799 -38.17960 -35.87608 -34.20698 -33.46326 -31.49288 -30.39237 -28.88582 -28.34937 -27.21079 -25.47101 -24.56788 -23.47877 -22.17153 -21.14746 -20.58829 -19.06161 -18.76007 -17.98219 -17.04516 -16.45512 -16.25695 -16.06339 -15.97750 -15.68802 -15.36818 -14.87691 -14.75229 -14.60970 -14.50400 -14.11777 -13.89636 -13.69379 -13.52313 -13.19309 -13.08955 -12.99279 -12.78513 -12.58987 -12.28903 -12.09050 -11.97694 -11.93283 -11.81398 -11.44681 -11.10517 -10.65006 -10.62919 -10.53722 -10.42087 -10.39211 -9.14331 -8.66457 -8.35399 -6.35968 -0.47954 0.38713 0.39282 0.67371 0.69594 1.51773 1.60729 1.77904 1.92524 2.44591 2.57739 3.03397 3.04564 3.17497 3.80532 3.90998 4.01111 4.03983 4.14599 4.21150 4.27288 4.36185 4.41790 4.56450 4.58473 4.64056 4.65440 4.66696 4.78370 4.84003 4.90071 4.99248 5.07984 5.14662 5.19221 5.25461 5.35130 5.37966 5.55285 5.55832 5.65570 5.87499 6.01977 6.20732 6.37453 6.60588 6.76604 6.78461 7.44393 8.74488 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.025268 B = 0.002116 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.839572 B =13226.562965 C =14179.105209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.035 3.965 3 N -0.503 5.503 4 C 0.085 3.915 5 C 0.009 3.991 6 C -0.165 4.165 7 C -0.069 4.069 8 C -0.209 4.209 9 C 0.206 3.794 10 N -0.741 5.741 11 C 0.144 3.856 12 C -0.079 4.079 13 H 0.059 0.941 14 C -0.124 4.124 15 C 0.018 3.982 16 C -0.605 4.605 17 H 0.053 0.947 18 C -0.042 4.042 19 N -0.941 5.941 20 Si 1.118 2.882 21 H -0.273 1.273 22 H -0.270 1.270 23 H -0.285 1.285 24 C -0.180 4.180 25 C -0.253 4.253 26 S 0.173 5.827 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.120 0.880 33 H 0.401 0.599 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.042 0.958 38 H 0.062 0.938 39 H -0.008 1.008 40 H -0.012 1.012 41 H 0.255 0.745 42 H 0.118 0.882 43 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.460 -30.756 -1.605 32.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.243 4.243 3 N -0.218 5.218 4 C -0.045 4.045 5 C 0.005 3.995 6 C -0.186 4.186 7 C -0.087 4.087 8 C -0.232 4.232 9 C 0.102 3.898 10 N -0.370 5.370 11 C 0.019 3.981 12 C -0.098 4.098 13 H 0.078 0.922 14 C -0.181 4.181 15 C -0.019 4.019 16 C -0.643 4.643 17 H 0.071 0.929 18 C -0.239 4.239 19 N -0.579 5.579 20 Si 0.939 3.061 21 H -0.199 1.199 22 H -0.195 1.195 23 H -0.210 1.210 24 C -0.204 4.204 25 C -0.392 4.392 26 S 0.429 5.571 27 H 0.117 0.883 28 H 0.124 0.876 29 H 0.103 0.897 30 H 0.165 0.835 31 H 0.168 0.832 32 H 0.138 0.862 33 H 0.237 0.763 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.010 0.990 40 H 0.006 0.994 41 H 0.065 0.935 42 H 0.136 0.864 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -9.633 -29.585 -1.435 31.147 hybrid contribution 0.463 -0.359 -0.126 0.599 sum -9.170 -29.943 -1.561 31.355 Atomic orbital electron populations 1.20638 0.83018 1.05269 1.05060 1.27573 1.03362 0.91218 1.02173 1.66144 1.04895 1.33276 1.17524 1.18934 0.88940 0.92782 1.03821 1.17962 0.92074 0.89993 0.99430 1.21085 0.90724 1.00329 1.06471 1.21076 1.00700 0.90941 0.95994 1.20966 0.93374 0.98479 1.10354 1.17949 0.93336 0.84556 0.93979 1.44757 1.08679 1.01807 1.81782 1.21237 0.91577 0.85127 1.00112 1.21086 0.97436 0.92720 0.98557 0.92217 1.21619 0.99378 1.01105 0.96015 1.19132 0.94586 0.93991 0.94206 1.22419 0.94634 0.93597 1.53681 0.92899 1.27369 0.96620 1.06746 0.93211 1.70887 1.08049 1.29965 1.48961 0.82919 0.74198 0.71300 0.77645 1.19863 1.19461 1.21023 1.20594 0.98772 0.91236 1.09784 1.27380 1.05153 0.95210 1.11449 1.83648 0.95666 1.10651 1.67146 0.88284 0.87569 0.89727 0.83526 0.83166 0.86242 0.76323 0.92779 0.93330 0.93304 0.93882 0.91915 0.98964 0.99363 0.93508 0.86408 0.78052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.46 71.24 0.75 -0.07 16 2 C 0.04 0.62 7.36 88.55 0.65 1.27 16 3 N -0.50 -12.39 9.92 -180.57 -1.79 -14.18 16 4 C 0.09 2.02 6.65 40.95 0.27 2.30 16 5 C 0.01 0.23 5.87 -20.06 -0.12 0.11 16 6 C -0.17 -3.54 9.48 22.51 0.21 -3.33 16 7 C -0.07 -1.53 10.03 22.22 0.22 -1.31 16 8 C -0.21 -5.76 9.31 22.44 0.21 -5.55 16 9 C 0.21 6.15 6.65 38.18 0.25 6.41 16 10 N -0.74 -22.74 5.46 -339.53 -1.85 -24.60 16 11 C 0.14 4.97 4.30 86.38 0.37 5.34 16 12 C -0.08 -3.17 2.37 -10.79 -0.03 -3.20 16 13 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 14 C -0.12 -4.57 8.88 71.98 0.64 -3.93 16 15 C 0.02 0.94 3.76 29.85 0.11 1.06 16 16 C -0.61 -34.17 8.41 25.60 0.22 -33.96 16 17 H 0.05 2.90 7.06 -2.91 -0.02 2.88 16 18 C -0.04 -2.47 5.46 84.65 0.46 -2.00 16 19 N -0.94 -58.69 13.65 21.45 0.29 -58.40 16 20 Si 1.12 50.70 29.90 68.60 2.05 52.76 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 24 C -0.18 -5.25 9.48 22.62 0.21 -5.04 16 25 C -0.25 -4.29 10.63 67.04 0.71 -3.58 16 26 S 0.17 2.26 23.16 -56.49 -1.31 0.95 16 27 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.15 2.15 6.66 -2.91 -0.02 2.13 16 31 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.12 3.31 6.72 -2.91 -0.02 3.29 16 33 H 0.40 11.59 7.66 -92.71 -0.71 10.88 16 34 H 0.05 1.87 7.93 -2.39 -0.02 1.85 16 35 H 0.05 1.73 7.96 -2.39 -0.02 1.71 16 36 H 0.05 1.94 6.95 -2.39 -0.02 1.93 16 37 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.06 1.93 7.18 -2.39 -0.02 1.91 16 39 H -0.01 -0.43 8.01 -2.39 -0.02 -0.45 16 40 H -0.01 -0.65 8.00 -2.39 -0.02 -0.67 16 41 H 0.26 16.10 7.22 -92.71 -0.67 15.43 16 42 H 0.12 3.54 7.70 -2.91 -0.02 3.52 16 43 H 0.20 2.24 6.89 -2.91 -0.02 2.22 16 Total: -1.00 -70.32 367.20 2.95 -67.37 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.41 Total: 21.58 kcal Atomic # 6 Polarization: -50.63 SS G_CDS: 5.15 Total: -45.48 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -3.35 Total: -97.18 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 2.05 Total: 52.76 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.31 Total: 0.95 kcal Total: -70.32 2.95 -67.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602429117.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.558 kcal (2) G-P(sol) polarization free energy of solvation -70.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds