Wall clock time and date at job start Tue Mar 31 2020 11:07:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 N 1.28795 * 124.75097 * 2 1
4 4 C 1.32522 * 117.12110 * 179.97438 * 3 2 1
5 5 C 1.48352 * 122.96423 * 179.97438 * 4 3 2
6 6 C 1.39431 * 120.08555 * 180.02562 * 5 4 3
7 7 C 1.38043 * 120.02140 * 179.97438 * 6 5 4
8 8 C 1.38218 * 120.20004 * 359.72839 * 7 6 5
9 9 C 1.38974 * 120.17615 * 0.54734 * 8 7 6
10 10 N 1.39689 * 120.01196 * 179.71975 * 9 8 7
11 11 C 1.46497 * 120.00206 * 359.73093 * 10 9 8
12 12 C 1.53000 * 109.46926 * 179.97438 * 11 10 9
13 13 H 1.09002 * 109.47398 * 305.00364 * 12 11 10
14 14 C 1.53002 * 109.47233 * 65.00537 * 12 11 10
15 15 C 1.52997 * 109.47060 * 185.00195 * 12 11 10
16 16 C 1.50698 * 109.47721 * 175.00208 * 15 12 11
17 17 H 1.08008 * 119.99163 * 0.02562 * 16 15 12
18 18 C 1.37869 * 120.00614 * 180.02562 * 16 15 12
19 19 N 1.31514 * 120.00228 * 180.02562 * 18 16 15
20 20 Si 1.86801 * 119.99783 * 359.97438 * 18 16 15
21 21 H 1.48489 * 109.47262 * 90.00178 * 20 18 16
22 22 H 1.48509 * 109.46916 * 210.00229 * 20 18 16
23 23 H 1.48493 * 109.47108 * 329.99715 * 20 18 16
24 24 C 1.38710 * 119.97154 * 359.45535 * 9 8 7
25 25 C 1.34833 * 114.07351 * 0.26989 * 4 3 2
26 26 S 1.70911 * 124.75481 * 179.97438 * 2 1 3
27 27 H 1.08998 * 109.47038 * 90.00403 * 1 2 3
28 28 H 1.09009 * 109.46789 * 210.00098 * 1 2 3
29 29 H 1.08998 * 109.47229 * 329.99907 * 1 2 3
30 30 H 1.07995 * 119.98998 * 359.96167 * 6 5 4
31 31 H 1.07996 * 119.89890 * 180.02562 * 7 6 5
32 32 H 1.08002 * 119.91387 * 180.30357 * 8 7 6
33 33 H 0.97005 * 119.99428 * 179.73743 * 10 9 8
34 34 H 1.09002 * 109.46761 * 60.00129 * 11 10 9
35 35 H 1.08991 * 109.47193 * 300.00262 * 11 10 9
36 36 H 1.09002 * 109.47075 * 59.99068 * 14 12 11
37 37 H 1.08996 * 109.47407 * 180.02562 * 14 12 11
38 38 H 1.09000 * 109.46986 * 299.99797 * 14 12 11
39 39 H 1.09000 * 109.47325 * 295.00173 * 15 12 11
40 40 H 1.09008 * 109.47017 * 55.00082 * 15 12 11
41 41 H 0.96997 * 120.00333 * 180.02562 * 19 18 16
42 42 H 1.08006 * 120.10004 * 180.24492 * 24 9 8
43 43 H 1.07999 * 126.06164 * 179.72684 * 25 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2412 1.0582 0.0000
4 6 3.5547 0.8823 0.0005
5 6 4.5200 2.0088 0.0000
6 6 5.8909 1.7545 0.0001
7 6 6.7880 2.8037 -0.0009
8 6 6.3319 4.1084 -0.0076
9 6 4.9673 4.3714 -0.0019
10 7 4.5101 5.6914 -0.0028
11 6 5.4691 6.7988 -0.0038
12 6 4.7125 8.1286 -0.0053
13 1 4.0206 8.1521 -0.8472
14 6 3.9303 8.2719 1.3018
15 6 5.7094 9.2823 -0.1321
16 6 4.9590 10.5832 -0.2570
17 1 3.8790 10.5867 -0.2466
18 6 5.6511 11.7688 -0.3847
19 7 4.9962 12.9041 -0.4932
20 14 7.5190 11.7627 -0.4020
21 1 8.0006 11.6190 -1.7993
22 1 8.0234 13.0384 0.1668
23 1 8.0178 10.6260 0.4129
24 6 4.0594 3.3226 -0.0009
25 6 3.9364 -0.4109 -0.0048
26 16 2.4814 -1.4042 0.0006
27 1 -0.3633 -0.0001 -1.0277
28 1 -0.3633 -0.8901 0.5139
29 1 -0.3633 0.8900 0.5138
30 1 6.2511 0.7363 0.0011
31 1 7.8494 2.6044 -0.0013
32 1 7.0378 4.9258 -0.0133
33 1 3.5575 5.8746 -0.0027
34 1 6.0952 6.7363 -0.8939
35 1 6.0955 6.7377 0.8860
36 1 4.6222 8.2483 2.1437
37 1 3.3910 9.2190 1.3006
38 1 3.2201 7.4499 1.3922
39 1 6.3444 9.3128 0.7533
40 1 6.3274 9.1329 -1.0175
41 1 5.4830 13.7382 -0.5834
42 1 2.9984 3.5247 -0.0005
43 1 4.9537 -0.7735 -0.0096
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000602429118.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:07:54
Heat of formation + Delta-G solvation = 52.052111 kcal
Electronic energy + Delta-G solvation = -22398.814245 eV
Core-core repulsion = 19148.790112 eV
Total energy + Delta-G solvation = -3250.024133 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 316.130 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-40.36835 -38.99793 -36.74331 -34.21713 -32.88761 -32.08162 -30.59607 -29.48603
-28.10545 -27.28828 -25.90266 -24.42686 -22.71137 -22.30019 -21.16965 -19.75786
-19.31279 -18.09629 -17.10646 -16.73636 -15.96823 -15.43810 -15.30536 -15.20855
-14.66235 -14.26958 -14.11664 -13.83178 -13.51166 -13.43013 -13.29389 -13.11049
-12.88563 -12.55760 -12.30895 -12.18361 -12.00062 -11.87490 -11.38037 -11.08136
-11.05642 -10.90900 -10.48774 -10.22268 -9.92934 -9.92644 -9.75053 -9.71742
-9.63274 -9.50964 -9.14426 -8.56000 -8.28126 -7.24437 -6.06265 -4.04231
0.27129 1.03859 1.30050 1.40586 1.66409 2.77750 3.29035 3.36868
3.39580 3.64587 3.71463 4.03347 4.43053 4.56038 4.81547 4.91124
4.96897 5.06521 5.16073 5.24714 5.26828 5.29818 5.40177 5.49467
5.56783 5.62167 5.73371 5.79155 5.83128 6.06734 6.09709 6.27242
6.31598 6.39335 6.52157 6.61489 6.67223 6.81950 6.88677 6.99133
7.17368 7.36540 7.48181 7.53032 7.76407 7.93135 8.51052 8.98110
9.55900 11.06933
Molecular weight = 316.13amu
Principal moments of inertia in cm(-1)
A = 0.026211 B = 0.002191 C = 0.002044
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1067.985984 B =12777.138757 C =13697.015036
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 C 0.052 3.948
3 N -0.463 5.463
4 C 0.119 3.881
5 C 0.016 3.984
6 C -0.170 4.170
7 C -0.072 4.072
8 C -0.191 4.191
9 C 0.223 3.777
10 N -0.739 5.739
11 C 0.124 3.876
12 C -0.087 4.087
13 H 0.068 0.932
14 C -0.134 4.134
15 C -0.006 4.006
16 C -0.516 4.516
17 H 0.074 0.926
18 C 0.066 3.934
19 N -0.903 5.903
20 Si 0.878 3.122
21 H -0.277 1.277
22 H -0.288 1.288
23 H -0.265 1.265
24 C -0.166 4.166
25 C -0.253 4.253
26 S 0.112 5.888
27 H 0.087 0.913
28 H 0.081 0.919
29 H 0.091 0.909
30 H 0.116 0.884
31 H 0.122 0.878
32 H 0.123 0.877
33 H 0.400 0.600
34 H 0.056 0.944
35 H 0.056 0.944
36 H 0.046 0.954
37 H 0.069 0.931
38 H 0.033 0.967
39 H 0.018 0.982
40 H 0.013 0.987
41 H 0.263 0.737
42 H 0.128 0.872
43 H 0.180 0.820
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.636 -30.687 1.622 30.945
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.227 4.227
3 N -0.177 5.177
4 C -0.011 4.011
5 C 0.013 3.987
6 C -0.192 4.192
7 C -0.091 4.091
8 C -0.215 4.215
9 C 0.117 3.883
10 N -0.367 5.367
11 C 0.000 4.000
12 C -0.106 4.106
13 H 0.086 0.914
14 C -0.191 4.191
15 C -0.044 4.044
16 C -0.554 4.554
17 H 0.092 0.908
18 C -0.136 4.136
19 N -0.542 5.542
20 Si 0.706 3.294
21 H -0.203 1.203
22 H -0.214 1.214
23 H -0.190 1.190
24 C -0.189 4.189
25 C -0.392 4.392
26 S 0.367 5.633
27 H 0.106 0.894
28 H 0.100 0.900
29 H 0.109 0.891
30 H 0.134 0.866
31 H 0.140 0.860
32 H 0.141 0.859
33 H 0.235 0.765
34 H 0.074 0.926
35 H 0.074 0.926
36 H 0.065 0.935
37 H 0.088 0.912
38 H 0.052 0.948
39 H 0.036 0.964
40 H 0.031 0.969
41 H 0.073 0.927
42 H 0.146 0.854
43 H 0.197 0.803
Dipole moment (debyes) X Y Z Total
from point charges -3.963 -30.902 1.612 31.197
hybrid contribution 1.336 0.948 -0.072 1.639
sum -2.628 -29.954 1.540 30.109
Atomic orbital electron populations
1.20479 0.85007 1.04359 1.04064 1.26995 1.01882 0.90804 1.03022
1.66150 1.04372 1.31378 1.15814 1.18893 0.88792 0.92122 1.01294
1.17656 0.90852 0.89993 1.00240 1.20721 0.91492 0.98849 1.08121
1.20725 0.99062 0.91836 0.97450 1.20799 0.93764 0.97380 1.09517
1.17815 0.92705 0.84963 0.92819 1.44972 1.09089 1.01932 1.80697
1.21645 0.91892 0.85973 1.00481 1.21240 0.98375 0.92633 0.98361
0.91359 1.21729 0.99328 1.01212 0.96829 1.19569 0.94757 0.93702
0.96383 1.21081 0.95037 0.89243 1.50024 0.90826 1.25026 0.98301
0.95564 0.94663 1.69908 1.35735 0.97977 1.50595 0.86802 0.86436
0.77535 0.78644 1.20327 1.21425 1.19010 1.20612 0.99298 0.90535
1.08504 1.26997 1.03071 0.95571 1.13570 1.83887 0.97747 1.12835
1.68815 0.89435 0.90043 0.89065 0.86630 0.86022 0.85856 0.76523
0.92578 0.92588 0.93522 0.91241 0.94802 0.96357 0.96910 0.92743
0.85433 0.80308
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.46 10.46 36.01 0.38 -0.09 16
2 C 0.05 0.49 7.36 -13.55 -0.10 0.39 16
3 N -0.46 -5.73 9.91 -8.42 -0.08 -5.81 16
4 C 0.12 1.45 6.65 -84.61 -0.56 0.89 16
5 C 0.02 0.21 5.87 -104.92 -0.62 -0.41 16
6 C -0.17 -1.94 9.48 -39.21 -0.37 -2.31 16
7 C -0.07 -0.83 10.03 -39.66 -0.40 -1.22 16
8 C -0.19 -2.53 9.31 -39.32 -0.37 -2.90 16
9 C 0.22 3.16 6.65 -83.83 -0.56 2.60 16
10 N -0.74 -10.67 5.46 -58.67 -0.32 -10.99 16
11 C 0.12 1.96 4.30 -4.04 -0.02 1.94 16
12 C -0.09 -1.63 2.37 -90.62 -0.22 -1.84 16
13 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16
14 C -0.13 -2.39 8.88 37.16 0.33 -2.06 16
15 C -0.01 -0.14 3.52 -27.89 -0.10 -0.24 16
16 C -0.52 -14.24 8.96 -34.44 -0.31 -14.55 16
17 H 0.07 2.18 7.30 -52.48 -0.38 1.80 16
18 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16
19 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16
20 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16
21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
23 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16
24 C -0.17 -2.31 9.48 -39.04 -0.37 -2.68 16
25 C -0.25 -2.41 10.63 29.52 0.31 -2.10 16
26 S 0.11 0.87 23.16 -107.50 -2.49 -1.62 16
27 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16
28 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16
29 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16
30 H 0.12 1.02 6.66 -52.49 -0.35 0.67 16
31 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16
32 H 0.12 1.58 6.72 -52.49 -0.35 1.23 16
33 H 0.40 5.48 7.66 -40.82 -0.31 5.17 16
34 H 0.06 0.89 7.93 -51.93 -0.41 0.47 16
35 H 0.06 0.88 7.95 -51.93 -0.41 0.46 16
36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16
37 H 0.07 1.39 6.95 -51.93 -0.36 1.03 16
38 H 0.03 0.52 7.18 -51.93 -0.37 0.14 16
39 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16
40 H 0.01 0.29 7.57 -51.92 -0.39 -0.10 16
41 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16
42 H 0.13 1.79 7.70 -52.48 -0.40 1.38 16
43 H 0.18 1.28 6.89 -52.49 -0.36 0.92 16
LS Contribution 364.91 15.07 5.50 5.50
Total: -1.00 -31.53 364.91 -10.54 -42.08
By element:
Atomic # 1 Polarization: 9.83 SS G_CDS: -6.19 Total: 3.64 kcal
Atomic # 6 Polarization: -19.74 SS G_CDS: -3.06 Total: -22.79 kcal
Atomic # 7 Polarization: -43.97 SS G_CDS: 0.37 Total: -43.60 kcal
Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal
Atomic # 16 Polarization: 0.87 SS G_CDS: -2.49 Total: -1.62 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -31.53 -10.54 -42.08 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602429118.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.127 kcal
(2) G-P(sol) polarization free energy of solvation -31.535 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.592 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.540 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.075 kcal
(6) G-S(sol) free energy of system = (1) + (5) 52.052 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds