Wall clock time and date at job start Tue Mar 31 2020 11:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.28795 * 124.75097 * 2 1 4 4 C 1.32522 * 117.12110 * 179.97438 * 3 2 1 5 5 C 1.48352 * 122.96423 * 179.97438 * 4 3 2 6 6 C 1.39431 * 120.08555 * 180.02562 * 5 4 3 7 7 C 1.38043 * 120.02140 * 179.97438 * 6 5 4 8 8 C 1.38218 * 120.20004 * 359.72839 * 7 6 5 9 9 C 1.38974 * 120.17615 * 0.54734 * 8 7 6 10 10 N 1.39689 * 120.01196 * 179.71975 * 9 8 7 11 11 C 1.46497 * 120.00206 * 359.73093 * 10 9 8 12 12 C 1.53000 * 109.46926 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.47398 * 305.00364 * 12 11 10 14 14 C 1.53002 * 109.47233 * 65.00537 * 12 11 10 15 15 C 1.52997 * 109.47060 * 185.00195 * 12 11 10 16 16 C 1.50698 * 109.47721 * 175.00208 * 15 12 11 17 17 H 1.08008 * 119.99163 * 0.02562 * 16 15 12 18 18 C 1.37869 * 120.00614 * 180.02562 * 16 15 12 19 19 N 1.31514 * 120.00228 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99783 * 359.97438 * 18 16 15 21 21 H 1.48489 * 109.47262 * 90.00178 * 20 18 16 22 22 H 1.48509 * 109.46916 * 210.00229 * 20 18 16 23 23 H 1.48493 * 109.47108 * 329.99715 * 20 18 16 24 24 C 1.38710 * 119.97154 * 359.45535 * 9 8 7 25 25 C 1.34833 * 114.07351 * 0.26989 * 4 3 2 26 26 S 1.70911 * 124.75481 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.47038 * 90.00403 * 1 2 3 28 28 H 1.09009 * 109.46789 * 210.00098 * 1 2 3 29 29 H 1.08998 * 109.47229 * 329.99907 * 1 2 3 30 30 H 1.07995 * 119.98998 * 359.96167 * 6 5 4 31 31 H 1.07996 * 119.89890 * 180.02562 * 7 6 5 32 32 H 1.08002 * 119.91387 * 180.30357 * 8 7 6 33 33 H 0.97005 * 119.99428 * 179.73743 * 10 9 8 34 34 H 1.09002 * 109.46761 * 60.00129 * 11 10 9 35 35 H 1.08991 * 109.47193 * 300.00262 * 11 10 9 36 36 H 1.09002 * 109.47075 * 59.99068 * 14 12 11 37 37 H 1.08996 * 109.47407 * 180.02562 * 14 12 11 38 38 H 1.09000 * 109.46986 * 299.99797 * 14 12 11 39 39 H 1.09000 * 109.47325 * 295.00173 * 15 12 11 40 40 H 1.09008 * 109.47017 * 55.00082 * 15 12 11 41 41 H 0.96997 * 120.00333 * 180.02562 * 19 18 16 42 42 H 1.08006 * 120.10004 * 180.24492 * 24 9 8 43 43 H 1.07999 * 126.06164 * 179.72684 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2412 1.0582 0.0000 4 6 3.5547 0.8823 0.0005 5 6 4.5200 2.0088 0.0000 6 6 5.8909 1.7545 0.0001 7 6 6.7880 2.8037 -0.0009 8 6 6.3319 4.1084 -0.0076 9 6 4.9673 4.3714 -0.0019 10 7 4.5101 5.6914 -0.0028 11 6 5.4691 6.7988 -0.0038 12 6 4.7125 8.1286 -0.0053 13 1 4.0206 8.1521 -0.8472 14 6 3.9303 8.2719 1.3018 15 6 5.7094 9.2823 -0.1321 16 6 4.9590 10.5832 -0.2570 17 1 3.8790 10.5867 -0.2466 18 6 5.6511 11.7688 -0.3847 19 7 4.9962 12.9041 -0.4932 20 14 7.5190 11.7627 -0.4020 21 1 8.0006 11.6190 -1.7993 22 1 8.0234 13.0384 0.1668 23 1 8.0178 10.6260 0.4129 24 6 4.0594 3.3226 -0.0009 25 6 3.9364 -0.4109 -0.0048 26 16 2.4814 -1.4042 0.0006 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8901 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 6.2511 0.7363 0.0011 31 1 7.8494 2.6044 -0.0013 32 1 7.0378 4.9258 -0.0133 33 1 3.5575 5.8746 -0.0027 34 1 6.0952 6.7363 -0.8939 35 1 6.0955 6.7377 0.8860 36 1 4.6222 8.2483 2.1437 37 1 3.3910 9.2190 1.3006 38 1 3.2201 7.4499 1.3922 39 1 6.3444 9.3128 0.7533 40 1 6.3274 9.1329 -1.0175 41 1 5.4830 13.7382 -0.5834 42 1 2.9984 3.5247 -0.0005 43 1 4.9537 -0.7735 -0.0096 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602429118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:54 Heat of formation + Delta-G solvation = 52.052111 kcal Electronic energy + Delta-G solvation = -22398.814245 eV Core-core repulsion = 19148.790112 eV Total energy + Delta-G solvation = -3250.024133 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.36835 -38.99793 -36.74331 -34.21713 -32.88761 -32.08162 -30.59607 -29.48603 -28.10545 -27.28828 -25.90266 -24.42686 -22.71137 -22.30019 -21.16965 -19.75786 -19.31279 -18.09629 -17.10646 -16.73636 -15.96823 -15.43810 -15.30536 -15.20855 -14.66235 -14.26958 -14.11664 -13.83178 -13.51166 -13.43013 -13.29389 -13.11049 -12.88563 -12.55760 -12.30895 -12.18361 -12.00062 -11.87490 -11.38037 -11.08136 -11.05642 -10.90900 -10.48774 -10.22268 -9.92934 -9.92644 -9.75053 -9.71742 -9.63274 -9.50964 -9.14426 -8.56000 -8.28126 -7.24437 -6.06265 -4.04231 0.27129 1.03859 1.30050 1.40586 1.66409 2.77750 3.29035 3.36868 3.39580 3.64587 3.71463 4.03347 4.43053 4.56038 4.81547 4.91124 4.96897 5.06521 5.16073 5.24714 5.26828 5.29818 5.40177 5.49467 5.56783 5.62167 5.73371 5.79155 5.83128 6.06734 6.09709 6.27242 6.31598 6.39335 6.52157 6.61489 6.67223 6.81950 6.88677 6.99133 7.17368 7.36540 7.48181 7.53032 7.76407 7.93135 8.51052 8.98110 9.55900 11.06933 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.026211 B = 0.002191 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.985984 B =12777.138757 C =13697.015036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.052 3.948 3 N -0.463 5.463 4 C 0.119 3.881 5 C 0.016 3.984 6 C -0.170 4.170 7 C -0.072 4.072 8 C -0.191 4.191 9 C 0.223 3.777 10 N -0.739 5.739 11 C 0.124 3.876 12 C -0.087 4.087 13 H 0.068 0.932 14 C -0.134 4.134 15 C -0.006 4.006 16 C -0.516 4.516 17 H 0.074 0.926 18 C 0.066 3.934 19 N -0.903 5.903 20 Si 0.878 3.122 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 C -0.166 4.166 25 C -0.253 4.253 26 S 0.112 5.888 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.400 0.600 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.033 0.967 39 H 0.018 0.982 40 H 0.013 0.987 41 H 0.263 0.737 42 H 0.128 0.872 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.636 -30.687 1.622 30.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.227 4.227 3 N -0.177 5.177 4 C -0.011 4.011 5 C 0.013 3.987 6 C -0.192 4.192 7 C -0.091 4.091 8 C -0.215 4.215 9 C 0.117 3.883 10 N -0.367 5.367 11 C 0.000 4.000 12 C -0.106 4.106 13 H 0.086 0.914 14 C -0.191 4.191 15 C -0.044 4.044 16 C -0.554 4.554 17 H 0.092 0.908 18 C -0.136 4.136 19 N -0.542 5.542 20 Si 0.706 3.294 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.190 1.190 24 C -0.189 4.189 25 C -0.392 4.392 26 S 0.367 5.633 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.134 0.866 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.235 0.765 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.052 0.948 39 H 0.036 0.964 40 H 0.031 0.969 41 H 0.073 0.927 42 H 0.146 0.854 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -3.963 -30.902 1.612 31.197 hybrid contribution 1.336 0.948 -0.072 1.639 sum -2.628 -29.954 1.540 30.109 Atomic orbital electron populations 1.20479 0.85007 1.04359 1.04064 1.26995 1.01882 0.90804 1.03022 1.66150 1.04372 1.31378 1.15814 1.18893 0.88792 0.92122 1.01294 1.17656 0.90852 0.89993 1.00240 1.20721 0.91492 0.98849 1.08121 1.20725 0.99062 0.91836 0.97450 1.20799 0.93764 0.97380 1.09517 1.17815 0.92705 0.84963 0.92819 1.44972 1.09089 1.01932 1.80697 1.21645 0.91892 0.85973 1.00481 1.21240 0.98375 0.92633 0.98361 0.91359 1.21729 0.99328 1.01212 0.96829 1.19569 0.94757 0.93702 0.96383 1.21081 0.95037 0.89243 1.50024 0.90826 1.25026 0.98301 0.95564 0.94663 1.69908 1.35735 0.97977 1.50595 0.86802 0.86436 0.77535 0.78644 1.20327 1.21425 1.19010 1.20612 0.99298 0.90535 1.08504 1.26997 1.03071 0.95571 1.13570 1.83887 0.97747 1.12835 1.68815 0.89435 0.90043 0.89065 0.86630 0.86022 0.85856 0.76523 0.92578 0.92588 0.93522 0.91241 0.94802 0.96357 0.96910 0.92743 0.85433 0.80308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.46 36.01 0.38 -0.09 16 2 C 0.05 0.49 7.36 -13.55 -0.10 0.39 16 3 N -0.46 -5.73 9.91 -8.42 -0.08 -5.81 16 4 C 0.12 1.45 6.65 -84.61 -0.56 0.89 16 5 C 0.02 0.21 5.87 -104.92 -0.62 -0.41 16 6 C -0.17 -1.94 9.48 -39.21 -0.37 -2.31 16 7 C -0.07 -0.83 10.03 -39.66 -0.40 -1.22 16 8 C -0.19 -2.53 9.31 -39.32 -0.37 -2.90 16 9 C 0.22 3.16 6.65 -83.83 -0.56 2.60 16 10 N -0.74 -10.67 5.46 -58.67 -0.32 -10.99 16 11 C 0.12 1.96 4.30 -4.04 -0.02 1.94 16 12 C -0.09 -1.63 2.37 -90.62 -0.22 -1.84 16 13 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 14 C -0.13 -2.39 8.88 37.16 0.33 -2.06 16 15 C -0.01 -0.14 3.52 -27.89 -0.10 -0.24 16 16 C -0.52 -14.24 8.96 -34.44 -0.31 -14.55 16 17 H 0.07 2.18 7.30 -52.48 -0.38 1.80 16 18 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 19 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 20 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 24 C -0.17 -2.31 9.48 -39.04 -0.37 -2.68 16 25 C -0.25 -2.41 10.63 29.52 0.31 -2.10 16 26 S 0.11 0.87 23.16 -107.50 -2.49 -1.62 16 27 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.12 1.02 6.66 -52.49 -0.35 0.67 16 31 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.12 1.58 6.72 -52.49 -0.35 1.23 16 33 H 0.40 5.48 7.66 -40.82 -0.31 5.17 16 34 H 0.06 0.89 7.93 -51.93 -0.41 0.47 16 35 H 0.06 0.88 7.95 -51.93 -0.41 0.46 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.39 6.95 -51.93 -0.36 1.03 16 38 H 0.03 0.52 7.18 -51.93 -0.37 0.14 16 39 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 40 H 0.01 0.29 7.57 -51.92 -0.39 -0.10 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 42 H 0.13 1.79 7.70 -52.48 -0.40 1.38 16 43 H 0.18 1.28 6.89 -52.49 -0.36 0.92 16 LS Contribution 364.91 15.07 5.50 5.50 Total: -1.00 -31.53 364.91 -10.54 -42.08 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.19 Total: 3.64 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -3.06 Total: -22.79 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.37 Total: -43.60 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.49 Total: -1.62 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.53 -10.54 -42.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602429118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.127 kcal (2) G-P(sol) polarization free energy of solvation -31.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds