Wall clock time and date at job start Tue Mar 31 2020 11:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.28795 * 124.75097 * 2 1 4 4 C 1.32522 * 117.12110 * 179.97438 * 3 2 1 5 5 C 1.48352 * 122.96423 * 179.97438 * 4 3 2 6 6 C 1.39431 * 120.08555 * 180.02562 * 5 4 3 7 7 C 1.38043 * 120.02140 * 179.97438 * 6 5 4 8 8 C 1.38218 * 120.20004 * 359.72839 * 7 6 5 9 9 C 1.38974 * 120.17615 * 0.54734 * 8 7 6 10 10 N 1.39689 * 120.01196 * 179.71975 * 9 8 7 11 11 C 1.46497 * 120.00206 * 359.73093 * 10 9 8 12 12 C 1.53000 * 109.46926 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.47398 * 305.00364 * 12 11 10 14 14 C 1.53002 * 109.47233 * 65.00537 * 12 11 10 15 15 C 1.52997 * 109.47060 * 185.00195 * 12 11 10 16 16 C 1.50698 * 109.47721 * 175.00208 * 15 12 11 17 17 H 1.08008 * 119.99163 * 0.02562 * 16 15 12 18 18 C 1.37869 * 120.00614 * 180.02562 * 16 15 12 19 19 N 1.31514 * 120.00228 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99783 * 359.97438 * 18 16 15 21 21 H 1.48489 * 109.47262 * 90.00178 * 20 18 16 22 22 H 1.48509 * 109.46916 * 210.00229 * 20 18 16 23 23 H 1.48493 * 109.47108 * 329.99715 * 20 18 16 24 24 C 1.38710 * 119.97154 * 359.45535 * 9 8 7 25 25 C 1.34833 * 114.07351 * 0.26989 * 4 3 2 26 26 S 1.70911 * 124.75481 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.47038 * 90.00403 * 1 2 3 28 28 H 1.09009 * 109.46789 * 210.00098 * 1 2 3 29 29 H 1.08998 * 109.47229 * 329.99907 * 1 2 3 30 30 H 1.07995 * 119.98998 * 359.96167 * 6 5 4 31 31 H 1.07996 * 119.89890 * 180.02562 * 7 6 5 32 32 H 1.08002 * 119.91387 * 180.30357 * 8 7 6 33 33 H 0.97005 * 119.99428 * 179.73743 * 10 9 8 34 34 H 1.09002 * 109.46761 * 60.00129 * 11 10 9 35 35 H 1.08991 * 109.47193 * 300.00262 * 11 10 9 36 36 H 1.09002 * 109.47075 * 59.99068 * 14 12 11 37 37 H 1.08996 * 109.47407 * 180.02562 * 14 12 11 38 38 H 1.09000 * 109.46986 * 299.99797 * 14 12 11 39 39 H 1.09000 * 109.47325 * 295.00173 * 15 12 11 40 40 H 1.09008 * 109.47017 * 55.00082 * 15 12 11 41 41 H 0.96997 * 120.00333 * 180.02562 * 19 18 16 42 42 H 1.08006 * 120.10004 * 180.24492 * 24 9 8 43 43 H 1.07999 * 126.06164 * 179.72684 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2412 1.0582 0.0000 4 6 3.5547 0.8823 0.0005 5 6 4.5200 2.0088 0.0000 6 6 5.8909 1.7545 0.0001 7 6 6.7880 2.8037 -0.0009 8 6 6.3319 4.1084 -0.0076 9 6 4.9673 4.3714 -0.0019 10 7 4.5101 5.6914 -0.0028 11 6 5.4691 6.7988 -0.0038 12 6 4.7125 8.1286 -0.0053 13 1 4.0206 8.1521 -0.8472 14 6 3.9303 8.2719 1.3018 15 6 5.7094 9.2823 -0.1321 16 6 4.9590 10.5832 -0.2570 17 1 3.8790 10.5867 -0.2466 18 6 5.6511 11.7688 -0.3847 19 7 4.9962 12.9041 -0.4932 20 14 7.5190 11.7627 -0.4020 21 1 8.0006 11.6190 -1.7993 22 1 8.0234 13.0384 0.1668 23 1 8.0178 10.6260 0.4129 24 6 4.0594 3.3226 -0.0009 25 6 3.9364 -0.4109 -0.0048 26 16 2.4814 -1.4042 0.0006 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8901 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 6.2511 0.7363 0.0011 31 1 7.8494 2.6044 -0.0013 32 1 7.0378 4.9258 -0.0133 33 1 3.5575 5.8746 -0.0027 34 1 6.0952 6.7363 -0.8939 35 1 6.0955 6.7377 0.8860 36 1 4.6222 8.2483 2.1437 37 1 3.3910 9.2190 1.3006 38 1 3.2201 7.4499 1.3922 39 1 6.3444 9.3128 0.7533 40 1 6.3274 9.1329 -1.0175 41 1 5.4830 13.7382 -0.5834 42 1 2.9984 3.5247 -0.0005 43 1 4.9537 -0.7735 -0.0096 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602429118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:53 Heat of formation + Delta-G solvation = 34.168747 kcal Electronic energy + Delta-G solvation = -22399.589725 eV Core-core repulsion = 19148.790112 eV Total energy + Delta-G solvation = -3250.799613 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.16781 -39.94605 -38.07213 -35.62272 -34.18954 -33.47799 -31.48068 -30.56491 -29.33522 -28.58073 -27.16663 -25.37638 -24.18546 -23.40014 -22.07968 -20.87074 -20.55338 -19.02374 -18.86691 -17.85963 -16.95294 -16.64510 -16.17330 -16.05187 -15.99244 -15.91816 -15.15323 -14.76235 -14.64878 -14.54382 -14.47302 -14.10223 -14.04024 -13.77613 -13.58199 -13.22664 -13.07168 -12.88850 -12.77055 -12.57751 -12.24834 -12.20535 -11.91982 -11.83438 -11.62465 -11.37931 -11.12489 -11.02795 -10.74311 -10.62990 -10.40257 -10.35375 -9.10965 -8.28466 -8.26722 -6.29697 -0.45636 0.40299 0.43129 0.71247 0.72636 1.37012 1.38611 1.50095 1.95527 2.37548 2.53748 3.05660 3.08649 3.09571 3.83959 3.97362 4.06054 4.13483 4.18562 4.28449 4.29937 4.41584 4.44965 4.59325 4.65193 4.66078 4.72214 4.75169 4.87601 4.89540 4.93437 5.03942 5.10994 5.21067 5.21921 5.32335 5.41591 5.46417 5.60601 5.63051 5.68462 5.70539 5.94497 6.30503 6.46471 6.77730 6.78605 6.83502 7.33925 8.89825 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.026211 B = 0.002191 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.985984 B =12777.138757 C =13697.015036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.035 3.965 3 N -0.503 5.503 4 C 0.085 3.915 5 C 0.007 3.993 6 C -0.167 4.167 7 C -0.069 4.069 8 C -0.206 4.206 9 C 0.207 3.793 10 N -0.743 5.743 11 C 0.140 3.860 12 C -0.081 4.081 13 H 0.056 0.944 14 C -0.127 4.127 15 C -0.005 4.005 16 C -0.520 4.520 17 H 0.035 0.965 18 C 0.000 4.000 19 N -0.954 5.954 20 Si 0.948 3.052 21 H -0.268 1.268 22 H -0.287 1.287 23 H -0.243 1.243 24 C -0.183 4.183 25 C -0.253 4.253 26 S 0.171 5.829 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.145 0.855 31 H 0.151 0.849 32 H 0.127 0.873 33 H 0.400 0.600 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.037 0.963 38 H 0.058 0.942 39 H 0.024 0.976 40 H 0.020 0.980 41 H 0.264 0.736 42 H 0.115 0.885 43 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.704 -34.327 1.840 34.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.244 4.244 3 N -0.219 5.219 4 C -0.045 4.045 5 C 0.004 3.996 6 C -0.188 4.188 7 C -0.087 4.087 8 C -0.229 4.229 9 C 0.103 3.897 10 N -0.372 5.372 11 C 0.016 3.984 12 C -0.100 4.100 13 H 0.075 0.925 14 C -0.184 4.184 15 C -0.042 4.042 16 C -0.558 4.558 17 H 0.053 0.947 18 C -0.196 4.196 19 N -0.595 5.595 20 Si 0.771 3.229 21 H -0.193 1.193 22 H -0.214 1.214 23 H -0.166 1.166 24 C -0.207 4.207 25 C -0.392 4.392 26 S 0.427 5.573 27 H 0.117 0.883 28 H 0.124 0.876 29 H 0.103 0.897 30 H 0.163 0.837 31 H 0.169 0.831 32 H 0.145 0.855 33 H 0.235 0.765 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.042 0.958 40 H 0.038 0.962 41 H 0.073 0.927 42 H 0.133 0.867 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -2.043 -34.591 1.834 34.700 hybrid contribution 0.587 1.913 -0.146 2.007 sum -1.456 -32.678 1.688 32.754 Atomic orbital electron populations 1.20635 0.83088 1.05253 1.05023 1.27562 1.03337 0.91234 1.02220 1.66146 1.04964 1.33255 1.17495 1.18973 0.88931 0.92864 1.03688 1.17959 0.92076 0.89962 0.99615 1.21077 0.90715 1.00364 1.06660 1.21086 1.00643 0.91017 0.95972 1.20992 0.93284 0.98511 1.10090 1.17937 0.93365 0.84525 0.93846 1.44811 1.08798 1.01908 1.81672 1.21333 0.91537 0.84615 1.00928 1.21069 0.97557 0.93088 0.98259 0.92508 1.21639 0.99612 1.00525 0.96667 1.19519 0.95266 0.92751 0.96714 1.21416 0.93795 0.91649 1.48909 0.94695 1.26014 1.04034 0.95071 0.94498 1.70071 1.38018 0.98842 1.52545 0.85691 0.79603 0.78195 0.79365 1.19340 1.21353 1.16650 1.20597 0.98769 0.91361 1.09945 1.27373 1.05087 0.95200 1.11567 1.83648 0.95767 1.10710 1.67204 0.88349 0.87579 0.89745 0.83748 0.83094 0.85547 0.76501 0.92320 0.91954 0.93028 0.94333 0.92302 0.95795 0.96157 0.92681 0.86707 0.78040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.46 71.24 0.75 -0.09 16 2 C 0.04 0.62 7.36 88.56 0.65 1.27 16 3 N -0.50 -12.36 9.91 -180.56 -1.79 -14.15 16 4 C 0.09 2.00 6.65 40.95 0.27 2.27 16 5 C 0.01 0.18 5.87 -20.06 -0.12 0.06 16 6 C -0.17 -3.40 9.48 22.51 0.21 -3.18 16 7 C -0.07 -1.40 10.03 22.22 0.22 -1.17 16 8 C -0.21 -5.13 9.31 22.44 0.21 -4.92 16 9 C 0.21 5.81 6.65 38.18 0.25 6.06 16 10 N -0.74 -21.25 5.46 -339.53 -1.85 -23.11 16 11 C 0.14 4.28 4.30 86.38 0.37 4.65 16 12 C -0.08 -3.02 2.37 -10.79 -0.03 -3.04 16 13 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 14 C -0.13 -4.59 8.88 71.98 0.64 -3.95 16 15 C 0.00 -0.21 3.52 29.85 0.10 -0.10 16 16 C -0.52 -29.47 8.96 25.60 0.23 -29.24 16 17 H 0.03 2.19 7.30 -2.91 -0.02 2.16 16 18 C 0.00 0.00 5.47 84.65 0.46 0.46 16 19 N -0.95 -60.09 13.96 21.44 0.30 -59.79 16 20 Si 0.95 44.05 27.47 68.60 1.88 45.93 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 23 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16 24 C -0.18 -5.16 9.48 22.62 0.21 -4.95 16 25 C -0.25 -4.23 10.63 67.04 0.71 -3.51 16 26 S 0.17 2.22 23.16 -56.49 -1.31 0.91 16 27 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.11 0.53 8.14 -2.38 -0.02 0.52 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.14 2.00 6.66 -2.91 -0.02 1.98 16 31 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.13 3.00 6.72 -2.91 -0.02 2.98 16 33 H 0.40 11.12 7.66 -92.70 -0.71 10.40 16 34 H 0.06 1.77 7.93 -2.39 -0.02 1.75 16 35 H 0.06 1.84 7.95 -2.39 -0.02 1.82 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.04 1.60 6.95 -2.39 -0.02 1.59 16 38 H 0.06 1.80 7.18 -2.39 -0.02 1.78 16 39 H 0.02 1.06 7.20 -2.39 -0.02 1.04 16 40 H 0.02 0.89 7.57 -2.38 -0.02 0.87 16 41 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 42 H 0.11 3.41 7.70 -2.91 -0.02 3.39 16 43 H 0.20 2.17 6.89 -2.91 -0.02 2.15 16 Total: -1.00 -70.66 364.91 2.64 -68.02 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.25 Total: 21.57 kcal Atomic # 6 Polarization: -44.55 SS G_CDS: 5.16 Total: -39.39 kcal Atomic # 7 Polarization: -93.70 SS G_CDS: -3.35 Total: -97.04 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.93 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -1.31 Total: 0.91 kcal Total: -70.66 2.64 -68.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602429118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.185 kcal (2) G-P(sol) polarization free energy of solvation -70.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds