Wall clock time and date at job start Tue Mar 31 2020 11:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38352 * 119.85523 * 269.72979 * 3 2 1 5 5 C 1.37970 * 120.13618 * 179.72556 * 4 3 2 6 6 C 1.39548 * 119.85557 * 0.54303 * 5 4 3 7 7 C 1.47876 * 120.13877 * 179.70759 * 6 5 4 8 8 N 1.30221 * 125.47179 * 359.73976 * 7 6 5 9 9 C 1.31303 * 117.04089 * 179.84086 * 8 7 6 10 10 C 1.50705 * 122.07738 * 180.19765 * 9 8 7 11 11 N 1.46897 * 109.47186 * 275.27448 * 10 9 8 12 12 C 1.46900 * 111.00023 * 180.02562 * 11 10 9 13 13 H 1.08995 * 109.47412 * 34.99749 * 12 11 10 14 14 C 1.53005 * 109.46807 * 274.99499 * 12 11 10 15 15 C 1.50707 * 109.47032 * 155.00195 * 12 11 10 16 16 H 1.08002 * 120.00031 * 359.97438 * 15 12 11 17 17 C 1.37874 * 119.99680 * 180.02562 * 15 12 11 18 18 N 1.31511 * 120.00245 * 359.97438 * 17 15 12 19 19 Si 1.86802 * 119.99772 * 179.97438 * 17 15 12 20 20 H 1.48508 * 109.47106 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47088 * 119.99661 * 19 17 15 22 22 H 1.48499 * 109.47215 * 239.99649 * 19 17 15 23 23 C 1.33720 * 115.84885 * 0.45546 * 9 8 7 24 24 S 1.76167 * 125.46916 * 180.02562 * 7 6 5 25 25 C 1.39543 * 119.71907 * 359.72788 * 6 5 4 26 26 C 1.37965 * 119.85281 * 0.02562 * 25 6 5 27 27 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 32 32 H 1.07998 * 119.92790 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.06715 * 180.27553 * 5 4 3 34 34 H 1.09000 * 109.46891 * 35.27447 * 10 9 8 35 35 H 1.08998 * 109.47401 * 155.27364 * 10 9 8 36 36 H 1.00900 * 110.99882 * 56.04319 * 11 10 9 37 37 H 1.09005 * 109.47033 * 60.00499 * 14 12 11 38 38 H 1.08999 * 109.46528 * 179.97438 * 14 12 11 39 39 H 1.08995 * 109.47339 * 300.00295 * 14 12 11 40 40 H 0.97004 * 119.99605 * 180.02562 * 18 17 15 41 41 H 1.07996 * 125.89563 * 179.76570 * 23 9 8 42 42 H 1.08001 * 120.07258 * 179.97438 * 25 6 5 43 43 H 1.08004 * 119.92494 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2673 2.0683 -1.1999 5 6 2.7218 3.3710 -1.2067 6 6 2.9553 4.0316 0.0001 7 6 3.4487 5.4256 0.0002 8 7 3.7055 6.1363 -1.0603 9 6 4.1349 7.3621 -0.8678 10 6 4.4621 8.2848 -2.0137 11 7 5.8380 8.0366 -2.4646 12 6 6.1929 8.9205 -3.5830 13 1 5.7121 9.8892 -3.4472 14 6 5.7195 8.2957 -4.8969 15 6 7.6883 9.1032 -3.6238 16 1 8.3125 8.6122 -2.8919 17 6 8.2594 9.8981 -4.5949 18 7 7.4992 10.4964 -5.4858 19 14 10.1129 10.1251 -4.6451 20 1 10.7365 9.3510 -3.5418 21 1 10.6360 9.6393 -5.9472 22 1 10.4397 11.5650 -4.4865 23 6 4.2690 7.7393 0.4080 24 16 3.7901 6.3892 1.4349 25 6 2.7217 3.3709 1.2069 26 6 2.2624 2.0700 1.1999 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.0906 1.5543 -2.1331 33 1 2.9006 3.8768 -2.1440 34 1 3.7713 8.1011 -2.8366 35 1 4.3687 9.3198 -1.6849 36 1 5.9675 7.0675 -2.7140 37 1 4.6379 8.1636 -4.8674 38 1 5.9824 8.9518 -5.7266 39 1 6.2003 7.3270 -5.0326 40 1 7.9012 11.0554 -6.1692 41 1 4.6113 8.7047 0.7503 42 1 2.9010 3.8766 2.1442 43 1 2.0816 1.5575 2.1332 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602864336.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:16 Heat of formation + Delta-G solvation = 56.093447 kcal Electronic energy + Delta-G solvation = -22418.837899 eV Core-core repulsion = 19168.989012 eV Total energy + Delta-G solvation = -3249.848887 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.99636 -39.18139 -35.90827 -34.68217 -32.66523 -31.25033 -31.20014 -29.35671 -28.10836 -25.67336 -25.14745 -24.50753 -23.03682 -22.63766 -20.89085 -20.17676 -19.15970 -17.95068 -16.52129 -16.29452 -15.68348 -15.58221 -14.95624 -14.77526 -14.47228 -14.02613 -13.95326 -13.85484 -13.60122 -13.40420 -13.18011 -13.00361 -12.55686 -12.49187 -12.14743 -11.62435 -11.60710 -11.47562 -11.37973 -11.17578 -11.09911 -10.92207 -10.68411 -10.49749 -10.12211 -9.93385 -9.67941 -9.62535 -9.19278 -9.12903 -8.98170 -8.35096 -8.08666 -7.23545 -5.96979 -4.00004 0.24139 1.18706 1.35426 1.46567 1.76715 2.95033 3.32892 3.40467 3.46334 3.63672 3.92147 4.42843 4.46344 4.54087 4.75772 4.86492 4.95933 5.00473 5.19266 5.19817 5.29659 5.34622 5.36761 5.52207 5.54780 5.58692 5.61519 5.69227 5.82239 5.85900 5.98611 6.13725 6.19881 6.29517 6.34777 6.44274 6.70121 6.72794 6.88576 7.11666 7.35611 7.76245 7.86362 7.89931 8.27443 8.53423 8.61267 9.07379 9.65161 11.10081 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.019382 B = 0.002475 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.317249 B =11312.599798 C =12033.282979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.072 4.072 4 C -0.119 4.119 5 C -0.069 4.069 6 C -0.023 4.023 7 C 0.107 3.893 8 N -0.451 5.451 9 C 0.083 3.917 10 C 0.130 3.870 11 N -0.678 5.678 12 C 0.211 3.789 13 H 0.035 0.965 14 C -0.169 4.169 15 C -0.493 4.493 16 H 0.063 0.937 17 C 0.054 3.946 18 N -0.897 5.897 19 Si 0.897 3.103 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.285 1.285 23 C -0.222 4.222 24 S 0.062 5.938 25 C -0.096 4.096 26 C -0.118 4.118 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.127 0.873 33 H 0.137 0.863 34 H 0.039 0.961 35 H 0.081 0.919 36 H 0.330 0.670 37 H 0.006 0.994 38 H 0.089 0.911 39 H 0.028 0.972 40 H 0.259 0.741 41 H 0.181 0.819 42 H 0.124 0.876 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.514 -17.704 14.060 26.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C -0.073 4.073 4 C -0.137 4.137 5 C -0.090 4.090 6 C -0.027 4.027 7 C -0.168 4.168 8 N -0.165 5.165 9 C -0.049 4.049 10 C -0.003 4.003 11 N -0.308 5.308 12 C 0.104 3.896 13 H 0.052 0.948 14 C -0.228 4.228 15 C -0.531 4.531 16 H 0.081 0.919 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.726 3.274 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.212 1.212 23 C -0.361 4.361 24 S 0.318 5.682 25 C -0.117 4.117 26 C -0.136 4.136 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.145 0.855 33 H 0.155 0.845 34 H 0.057 0.943 35 H 0.100 0.900 36 H 0.147 0.853 37 H 0.025 0.975 38 H 0.108 0.892 39 H 0.047 0.953 40 H 0.069 0.931 41 H 0.198 0.802 42 H 0.142 0.858 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.308 -17.449 14.985 27.088 hybrid contribution 0.780 0.526 -1.467 1.743 sum -13.527 -16.923 13.518 25.537 Atomic orbital electron populations 1.21754 0.94576 1.01760 1.02382 1.20582 0.96275 0.92487 1.03064 1.20053 0.97844 0.96282 0.93152 1.21021 1.00288 0.94579 0.97800 1.21324 0.95849 0.94019 0.97801 1.17832 1.01705 0.88832 0.94324 1.25716 1.03593 0.97705 0.89762 1.66334 1.13853 1.05688 1.30647 1.20333 0.98763 0.90791 0.94990 1.20504 0.92468 0.95551 0.91746 1.60897 1.18558 1.09631 1.41716 1.19208 0.96068 0.90892 0.83444 0.94756 1.22426 0.95431 1.00528 1.04433 1.21178 0.91305 1.28079 1.12587 0.91916 1.24953 0.98198 0.95858 0.95611 1.69896 1.34623 1.32146 1.17062 0.86448 0.85510 0.77721 0.77755 1.19763 1.21207 1.21153 1.26807 1.10273 1.03889 0.95157 1.84641 1.62641 1.07586 1.13381 1.21127 0.98926 0.95008 0.96605 1.20854 1.00609 0.94321 0.97774 0.92499 0.92355 0.92413 0.90903 0.90814 0.85482 0.84521 0.94329 0.90040 0.85340 0.97495 0.89229 0.95305 0.93135 0.80208 0.85773 0.85574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.89 37.16 0.37 -0.46 16 2 C -0.09 -0.53 6.06 -27.88 -0.17 -0.70 16 3 C -0.07 -0.62 5.14 -104.53 -0.54 -1.15 16 4 C -0.12 -1.14 9.68 -39.64 -0.38 -1.52 16 5 C -0.07 -0.81 9.68 -39.19 -0.38 -1.19 16 6 C -0.02 -0.29 5.87 -104.98 -0.62 -0.91 16 7 C 0.11 1.56 7.35 -14.29 -0.11 1.45 16 8 N -0.45 -7.60 10.11 -7.55 -0.08 -7.67 16 9 C 0.08 1.42 6.20 -84.40 -0.52 0.89 16 10 C 0.13 2.45 5.89 -4.98 -0.03 2.42 16 11 N -0.68 -14.99 6.22 -109.22 -0.68 -15.67 16 12 C 0.21 5.39 2.57 -68.86 -0.18 5.21 16 13 H 0.03 0.94 7.80 -51.93 -0.40 0.54 16 14 C -0.17 -4.16 8.94 37.16 0.33 -3.83 16 15 C -0.49 -13.82 8.84 -34.44 -0.30 -14.13 16 16 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 17 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 18 N -0.90 -25.86 11.32 55.43 0.63 -25.23 16 19 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 C -0.22 -3.28 11.06 29.15 0.32 -2.96 16 24 S 0.06 0.78 22.40 -107.50 -2.41 -1.63 16 25 C -0.10 -0.98 9.61 -39.20 -0.38 -1.35 16 26 C -0.12 -1.01 9.68 -39.64 -0.38 -1.39 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 31 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.14 1.72 7.82 -52.49 -0.41 1.31 16 34 H 0.04 0.75 7.44 -51.93 -0.39 0.36 16 35 H 0.08 1.48 8.00 -51.93 -0.42 1.06 16 36 H 0.33 7.31 8.47 -39.29 -0.33 6.98 16 37 H 0.01 0.14 7.45 -51.93 -0.39 -0.25 16 38 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 39 H 0.03 0.68 8.13 -51.93 -0.42 0.26 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.18 2.35 8.06 -52.49 -0.42 1.92 16 42 H 0.12 1.09 7.30 -52.49 -0.38 0.71 16 43 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 LS Contribution 372.05 15.07 5.61 5.61 Total: -1.00 -30.09 372.05 -11.39 -41.48 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.38 Total: 4.59 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -3.06 Total: -18.20 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.13 Total: -48.57 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.41 Total: -1.63 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.09 -11.39 -41.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864336.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.573 kcal (2) G-P(sol) polarization free energy of solvation -30.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds