Wall clock time and date at job start Tue Mar 31 2020 11:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38352 * 119.85523 * 269.72979 * 3 2 1 5 5 C 1.37970 * 120.13618 * 179.72556 * 4 3 2 6 6 C 1.39548 * 119.85557 * 0.54303 * 5 4 3 7 7 C 1.47876 * 120.13877 * 179.70759 * 6 5 4 8 8 N 1.30221 * 125.47179 * 359.73976 * 7 6 5 9 9 C 1.31303 * 117.04089 * 179.84086 * 8 7 6 10 10 C 1.50705 * 122.07738 * 180.19765 * 9 8 7 11 11 N 1.46897 * 109.47186 * 275.27448 * 10 9 8 12 12 C 1.46900 * 111.00023 * 180.02562 * 11 10 9 13 13 H 1.08995 * 109.47412 * 34.99749 * 12 11 10 14 14 C 1.53005 * 109.46807 * 274.99499 * 12 11 10 15 15 C 1.50707 * 109.47032 * 155.00195 * 12 11 10 16 16 H 1.08002 * 120.00031 * 359.97438 * 15 12 11 17 17 C 1.37874 * 119.99680 * 180.02562 * 15 12 11 18 18 N 1.31511 * 120.00245 * 359.97438 * 17 15 12 19 19 Si 1.86802 * 119.99772 * 179.97438 * 17 15 12 20 20 H 1.48508 * 109.47106 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47088 * 119.99661 * 19 17 15 22 22 H 1.48499 * 109.47215 * 239.99649 * 19 17 15 23 23 C 1.33720 * 115.84885 * 0.45546 * 9 8 7 24 24 S 1.76167 * 125.46916 * 180.02562 * 7 6 5 25 25 C 1.39543 * 119.71907 * 359.72788 * 6 5 4 26 26 C 1.37965 * 119.85281 * 0.02562 * 25 6 5 27 27 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 32 32 H 1.07998 * 119.92790 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.06715 * 180.27553 * 5 4 3 34 34 H 1.09000 * 109.46891 * 35.27447 * 10 9 8 35 35 H 1.08998 * 109.47401 * 155.27364 * 10 9 8 36 36 H 1.00900 * 110.99882 * 56.04319 * 11 10 9 37 37 H 1.09005 * 109.47033 * 60.00499 * 14 12 11 38 38 H 1.08999 * 109.46528 * 179.97438 * 14 12 11 39 39 H 1.08995 * 109.47339 * 300.00295 * 14 12 11 40 40 H 0.97004 * 119.99605 * 180.02562 * 18 17 15 41 41 H 1.07996 * 125.89563 * 179.76570 * 23 9 8 42 42 H 1.08001 * 120.07258 * 179.97438 * 25 6 5 43 43 H 1.08004 * 119.92494 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2673 2.0683 -1.1999 5 6 2.7218 3.3710 -1.2067 6 6 2.9553 4.0316 0.0001 7 6 3.4487 5.4256 0.0002 8 7 3.7055 6.1363 -1.0603 9 6 4.1349 7.3621 -0.8678 10 6 4.4621 8.2848 -2.0137 11 7 5.8380 8.0366 -2.4646 12 6 6.1929 8.9205 -3.5830 13 1 5.7121 9.8892 -3.4472 14 6 5.7195 8.2957 -4.8969 15 6 7.6883 9.1032 -3.6238 16 1 8.3125 8.6122 -2.8919 17 6 8.2594 9.8981 -4.5949 18 7 7.4992 10.4964 -5.4858 19 14 10.1129 10.1251 -4.6451 20 1 10.7365 9.3510 -3.5418 21 1 10.6360 9.6393 -5.9472 22 1 10.4397 11.5650 -4.4865 23 6 4.2690 7.7393 0.4080 24 16 3.7901 6.3892 1.4349 25 6 2.7217 3.3709 1.2069 26 6 2.2624 2.0700 1.1999 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.0906 1.5543 -2.1331 33 1 2.9006 3.8768 -2.1440 34 1 3.7713 8.1011 -2.8366 35 1 4.3687 9.3198 -1.6849 36 1 5.9675 7.0675 -2.7140 37 1 4.6379 8.1636 -4.8674 38 1 5.9824 8.9518 -5.7266 39 1 6.2003 7.3270 -5.0326 40 1 7.9012 11.0554 -6.1692 41 1 4.6113 8.7047 0.7503 42 1 2.9010 3.8766 2.1442 43 1 2.0816 1.5575 2.1332 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602864336.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:15 Heat of formation + Delta-G solvation = 39.647768 kcal Electronic energy + Delta-G solvation = -22419.551037 eV Core-core repulsion = 19168.989012 eV Total energy + Delta-G solvation = -3250.562025 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.02408 -40.10237 -37.71136 -35.45223 -34.51925 -32.44943 -31.98786 -30.61007 -29.48826 -27.31375 -26.77753 -25.72475 -23.80623 -23.53273 -22.18414 -21.67789 -20.28909 -19.08896 -18.27479 -17.51959 -16.83498 -16.48377 -16.31523 -16.23791 -15.78572 -15.17521 -15.03628 -14.84968 -14.61111 -14.50641 -14.29521 -14.12900 -13.91864 -13.61548 -13.26015 -13.23658 -12.93886 -12.83490 -12.71827 -12.44871 -12.33791 -12.20108 -12.18067 -11.90752 -11.80460 -11.66766 -11.08006 -10.74152 -10.70452 -10.50624 -10.17306 -9.94401 -9.11604 -8.99467 -8.11031 -6.22253 -0.74861 0.28753 0.42661 0.52703 0.63329 1.41382 1.42773 1.55502 1.79503 2.43668 2.81787 2.89568 3.17080 3.68214 3.82929 3.89326 3.97887 4.03410 4.11389 4.31842 4.33223 4.44019 4.55293 4.57217 4.59724 4.68280 4.70456 4.76624 4.87481 4.96301 5.03427 5.06109 5.08478 5.14801 5.18019 5.35282 5.41299 5.44958 5.48492 5.66241 5.66437 5.77476 5.96732 6.22642 6.56814 6.67411 6.74759 6.90389 7.47200 8.94835 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.019382 B = 0.002475 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.317249 B =11312.599798 C =12033.282979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.066 4.066 4 C -0.123 4.123 5 C -0.086 4.086 6 C -0.052 4.052 7 C 0.098 3.902 8 N -0.486 5.486 9 C 0.061 3.939 10 C 0.136 3.864 11 N -0.678 5.678 12 C 0.216 3.784 13 H 0.010 0.990 14 C -0.155 4.155 15 C -0.513 4.513 16 H 0.053 0.947 17 C 0.008 3.992 18 N -0.921 5.921 19 Si 0.963 3.037 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.279 1.279 23 C -0.233 4.233 24 S 0.130 5.870 25 C -0.096 4.096 26 C -0.115 4.115 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.142 0.858 33 H 0.117 0.883 34 H 0.029 0.971 35 H 0.084 0.916 36 H 0.328 0.672 37 H 0.022 0.978 38 H 0.065 0.935 39 H 0.028 0.972 40 H 0.262 0.738 41 H 0.194 0.806 42 H 0.138 0.862 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.746 -19.723 16.167 29.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.067 4.067 4 C -0.141 4.141 5 C -0.107 4.107 6 C -0.056 4.056 7 C -0.176 4.176 8 N -0.201 5.201 9 C -0.071 4.071 10 C 0.004 3.996 11 N -0.307 5.307 12 C 0.108 3.892 13 H 0.028 0.972 14 C -0.215 4.215 15 C -0.552 4.552 16 H 0.071 0.929 17 C -0.190 4.190 18 N -0.562 5.562 19 Si 0.789 3.211 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.205 1.205 23 C -0.373 4.373 24 S 0.387 5.613 25 C -0.116 4.116 26 C -0.132 4.132 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.160 0.840 33 H 0.135 0.865 34 H 0.047 0.953 35 H 0.103 0.897 36 H 0.145 0.855 37 H 0.041 0.959 38 H 0.084 0.916 39 H 0.047 0.953 40 H 0.071 0.929 41 H 0.211 0.789 42 H 0.156 0.844 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.553 -19.475 17.111 29.730 hybrid contribution 0.743 1.024 -2.035 2.396 sum -13.810 -18.450 15.076 27.539 Atomic orbital electron populations 1.21750 0.94092 1.02555 1.01997 1.20653 0.96538 0.90835 1.04234 1.20412 0.96245 0.97389 0.92652 1.21225 0.99901 0.93765 0.99239 1.21306 0.97172 0.95135 0.97128 1.17996 1.03696 0.88350 0.95513 1.26164 1.02594 0.98533 0.90326 1.66283 1.15550 1.05953 1.32317 1.20023 1.00924 0.91128 0.94978 1.20394 0.90302 0.96484 0.92429 1.60775 1.21020 1.08877 1.40070 1.18984 0.94877 0.90479 0.84851 0.97241 1.22238 0.96424 0.99702 1.03125 1.21417 0.92554 1.28529 1.12709 0.92915 1.25729 1.02658 0.95452 0.95170 1.70013 1.36371 1.32383 1.17402 0.85433 0.80106 0.77770 0.77834 1.19497 1.20566 1.20503 1.27059 1.09523 1.05438 0.95256 1.84293 1.61041 1.05047 1.10902 1.21324 0.98495 0.95684 0.96115 1.21230 0.99268 0.93680 0.99072 0.92496 0.91013 0.93230 0.89306 0.90163 0.84025 0.86450 0.95287 0.89745 0.85517 0.95884 0.91578 0.95302 0.92914 0.78867 0.84417 0.82549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.89 71.98 0.71 -0.54 16 2 C -0.09 -0.79 6.06 29.85 0.18 -0.61 16 3 C -0.07 -0.97 5.14 -19.81 -0.10 -1.07 16 4 C -0.12 -2.25 9.68 22.23 0.22 -2.04 16 5 C -0.09 -2.07 9.68 22.52 0.22 -1.86 16 6 C -0.05 -1.27 5.87 -20.09 -0.12 -1.39 16 7 C 0.10 2.84 7.35 87.49 0.64 3.49 16 8 N -0.49 -16.83 10.11 -177.80 -1.80 -18.63 16 9 C 0.06 2.13 6.20 41.61 0.26 2.39 16 10 C 0.14 5.31 5.89 85.56 0.50 5.82 16 11 N -0.68 -30.89 6.22 -499.45 -3.11 -34.00 16 12 C 0.22 11.38 2.57 44.17 0.11 11.50 16 13 H 0.01 0.55 7.80 -2.39 -0.02 0.53 16 14 C -0.16 -7.87 8.94 71.98 0.64 -7.23 16 15 C -0.51 -29.37 8.84 25.60 0.23 -29.14 16 16 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 17 C 0.01 0.46 5.30 84.65 0.45 0.90 16 18 N -0.92 -53.86 11.32 21.45 0.24 -53.62 16 19 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 23 C -0.23 -6.78 11.06 66.79 0.74 -6.04 16 24 S 0.13 3.09 22.40 -56.49 -1.27 1.82 16 25 C -0.10 -1.76 9.61 22.52 0.22 -1.54 16 26 C -0.11 -1.63 9.68 22.23 0.22 -1.42 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.09 0.58 8.08 -2.39 -0.02 0.56 16 31 H 0.08 0.67 8.08 -2.39 -0.02 0.65 16 32 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.12 3.20 7.82 -2.91 -0.02 3.18 16 34 H 0.03 1.17 7.44 -2.39 -0.02 1.16 16 35 H 0.08 3.18 8.00 -2.39 -0.02 3.16 16 36 H 0.33 15.03 8.47 -89.69 -0.76 14.27 16 37 H 0.02 1.04 7.45 -2.38 -0.02 1.02 16 38 H 0.07 3.67 6.07 -2.39 -0.01 3.65 16 39 H 0.03 1.40 8.13 -2.39 -0.02 1.38 16 40 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 41 H 0.19 4.89 8.06 -2.91 -0.02 4.87 16 42 H 0.14 2.05 7.30 -2.91 -0.02 2.03 16 43 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -65.58 372.05 1.46 -64.12 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.25 Total: 22.21 kcal Atomic # 6 Polarization: -33.89 SS G_CDS: 5.11 Total: -28.78 kcal Atomic # 7 Polarization: -101.58 SS G_CDS: -4.66 Total: -106.24 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.27 Total: 1.82 kcal Total: -65.58 1.46 -64.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864336.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.767 kcal (2) G-P(sol) polarization free energy of solvation -65.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds