Wall clock time and date at job start Tue Mar 31 2020 11:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47475 * 2 1 4 4 H 1.09008 * 109.46859 * 305.00179 * 3 2 1 5 5 N 1.46500 * 109.47391 * 64.99845 * 3 2 1 6 6 C 1.34773 * 120.00431 * 205.00423 * 5 3 2 7 7 O 1.21593 * 119.99894 * 359.97438 * 6 5 3 8 8 N 1.34777 * 120.00097 * 179.72742 * 6 5 3 9 9 C 1.46504 * 119.99854 * 180.27545 * 8 6 5 10 10 C 1.50697 * 109.47338 * 89.99608 * 9 8 6 11 11 H 1.08004 * 120.00186 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00120 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99770 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99889 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47597 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46799 * 120.00652 * 14 12 10 17 17 H 1.48503 * 109.47078 * 240.00405 * 14 12 10 18 18 C 1.46496 * 119.99875 * 0.26801 * 8 6 5 19 19 C 1.50703 * 109.47067 * 90.00619 * 18 8 6 20 20 C 1.34510 * 125.79029 * 89.99423 * 19 18 8 21 21 C 1.41389 * 106.83829 * 180.02562 * 20 19 18 22 22 C 1.34508 * 106.84134 * 0.02562 * 21 20 19 23 23 O 1.34307 * 125.78516 * 269.69637 * 19 18 8 24 24 C 1.52996 * 109.47309 * 185.00095 * 3 2 1 25 25 F 1.39898 * 109.47001 * 305.00234 * 24 3 2 26 26 F 1.39907 * 109.46967 * 65.00004 * 24 3 2 27 27 H 1.08998 * 109.47263 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46923 * 300.00526 * 1 2 3 29 29 H 1.09001 * 109.46769 * 59.99791 * 1 2 3 30 30 H 1.09000 * 109.46933 * 239.99963 * 2 1 3 31 31 H 1.08992 * 109.47030 * 120.00179 * 2 1 3 32 32 H 0.97000 * 119.99456 * 24.99985 * 5 3 2 33 33 H 1.08994 * 109.46719 * 209.99532 * 9 8 6 34 34 H 1.08996 * 109.47068 * 329.99428 * 9 8 6 35 35 H 0.97004 * 119.99826 * 179.97438 * 13 12 10 36 36 H 1.08997 * 109.47346 * 210.00204 * 18 8 6 37 37 H 1.09004 * 109.47612 * 330.00302 * 18 8 6 38 38 H 1.08000 * 126.58517 * 359.97236 * 20 19 18 39 39 H 1.07996 * 126.57609 * 179.97438 * 21 20 19 40 40 H 1.08004 * 125.78900 * 179.97438 * 22 21 20 41 41 H 1.08995 * 109.47105 * 184.99495 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 7 1.6526 2.0975 1.2518 6 6 1.5258 3.4384 1.2995 7 8 1.7335 4.1046 0.3038 8 7 1.1639 4.0405 2.4498 9 6 1.0202 5.4976 2.5000 10 6 -0.3964 5.8751 2.1510 11 1 -1.1175 5.1065 1.9149 12 6 -0.7719 7.2016 2.1331 13 7 0.1063 8.1375 2.4202 14 14 -2.5277 7.6694 1.6998 15 1 -3.3126 6.4405 1.4190 16 1 -3.1411 8.3986 2.8388 17 1 -2.5253 8.5412 0.4976 18 6 0.9141 3.2380 3.6496 19 6 2.1958 3.0849 4.4274 20 6 2.6339 3.9131 5.3925 21 6 3.8687 3.3955 5.8469 22 6 4.1115 2.2824 5.1319 23 8 3.0916 2.0954 4.2782 24 6 3.5649 1.4442 -0.1257 25 9 4.1175 0.6571 0.8902 26 9 3.9307 0.9223 -1.3712 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.4872 1.5661 2.0462 33 1 1.2535 5.8512 3.5043 34 1 1.7046 5.9551 1.7857 35 1 -0.1578 9.0708 2.4072 36 1 0.1694 3.7353 4.2709 37 1 0.5460 2.2541 3.3586 38 1 2.1382 4.8031 5.7510 39 1 4.4968 3.8141 6.6193 40 1 4.9773 1.6443 5.2310 41 1 3.9356 2.4653 -0.0367 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603184208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:07 Heat of formation + Delta-G solvation = -136.723807 kcal Electronic energy + Delta-G solvation = -27818.212395 eV Core-core repulsion = 23563.019923 eV Total energy + Delta-G solvation = -4255.192471 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.01092 -47.97874 -43.43704 -41.22093 -37.65938 -36.72459 -34.88165 -33.86277 -33.11106 -31.54426 -30.06095 -28.78492 -26.81375 -25.26300 -24.57490 -22.62661 -22.10519 -21.79035 -20.98470 -19.21263 -18.83012 -18.49649 -18.25981 -17.97348 -17.91382 -17.20785 -16.81223 -16.45830 -16.19409 -15.62279 -15.29824 -15.13493 -14.80445 -14.53970 -14.37643 -14.35457 -14.08463 -13.99870 -13.72212 -13.57142 -13.45049 -13.27086 -13.25236 -13.01081 -12.72163 -12.54385 -12.37315 -12.19932 -11.96838 -11.82597 -11.70612 -11.17756 -10.80537 -10.61466 -10.32226 -9.61608 -9.36896 -8.19150 -6.32816 0.74451 1.39788 1.42150 1.52901 1.60548 1.83394 1.95718 2.24081 2.42474 2.79579 3.00900 3.12255 3.24824 3.36248 3.75723 3.79002 4.02556 4.08022 4.13755 4.17899 4.36470 4.41073 4.53346 4.59121 4.78372 4.89608 4.94032 5.05122 5.05986 5.08407 5.21892 5.24199 5.37872 5.38570 5.51972 5.63403 5.76204 6.00201 6.08462 6.24953 6.76551 6.99850 7.34091 7.60501 8.88325 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.010488 B = 0.005301 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.186210 B = 5280.375165 C = 6962.122900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C 0.122 3.878 4 H 0.101 0.899 5 N -0.721 5.721 6 C 0.701 3.299 7 O -0.627 6.627 8 N -0.608 5.608 9 C 0.282 3.718 10 C -0.538 4.538 11 H 0.058 0.942 12 C 0.010 3.990 13 N -0.928 5.928 14 Si 0.966 3.034 15 H -0.265 1.265 16 H -0.271 1.271 17 H -0.285 1.285 18 C 0.193 3.807 19 C -0.049 4.049 20 C -0.207 4.207 21 C -0.229 4.229 22 C -0.034 4.034 23 O -0.180 6.180 24 C 0.253 3.747 25 F -0.201 7.201 26 F -0.203 7.203 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.410 0.590 33 H 0.027 0.973 34 H -0.003 1.003 35 H 0.266 0.734 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.141 0.859 39 H 0.166 0.834 40 H 0.238 0.762 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.583 -18.759 3.632 19.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C 0.014 3.986 4 H 0.119 0.881 5 N -0.380 5.380 6 C 0.402 3.598 7 O -0.508 6.508 8 N -0.342 5.342 9 C 0.160 3.840 10 C -0.576 4.576 11 H 0.076 0.924 12 C -0.189 4.189 13 N -0.568 5.568 14 Si 0.791 3.209 15 H -0.189 1.189 16 H -0.197 1.197 17 H -0.211 1.211 18 C 0.070 3.930 19 C -0.100 4.100 20 C -0.228 4.228 21 C -0.248 4.248 22 C -0.102 4.102 23 O -0.076 6.076 24 C 0.197 3.803 25 F -0.183 7.183 26 F -0.184 7.184 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.249 0.751 33 H 0.045 0.955 34 H 0.015 0.985 35 H 0.075 0.925 36 H 0.138 0.862 37 H 0.127 0.873 38 H 0.159 0.841 39 H 0.183 0.817 40 H 0.254 0.746 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.708 -18.336 2.734 19.127 hybrid contribution -0.380 0.957 0.290 1.069 sum 4.328 -17.379 3.023 18.163 Atomic orbital electron populations 1.21720 0.93748 1.02956 1.02019 1.21790 0.97860 0.91457 1.05007 1.21854 0.90644 0.97244 0.88853 0.88071 1.44967 1.74752 1.04385 1.13857 1.16116 0.77826 0.82286 0.83548 1.90877 1.59568 1.64839 1.35523 1.47430 1.70174 1.08571 1.08003 1.18659 0.95569 0.73756 0.95968 1.21745 0.96378 0.92495 1.47021 0.92377 1.25803 1.01945 0.96256 0.94938 1.70063 1.36138 1.00857 1.49773 0.85394 0.79392 0.78298 0.77859 1.18932 1.19668 1.21136 1.19954 0.89710 0.97441 0.85903 1.23070 0.95210 0.90754 1.00960 1.21893 0.98634 1.01869 1.00378 1.22123 0.98576 0.98770 1.05317 1.24764 0.92843 1.00571 0.91987 1.83996 1.27767 1.43841 1.52028 1.22363 0.94894 0.91959 0.71050 1.92949 1.87458 1.77506 1.60371 1.92953 1.93011 1.89061 1.43399 0.90120 0.92974 0.93130 0.88533 0.89397 0.75126 0.95530 0.98460 0.92521 0.86217 0.87337 0.84085 0.81659 0.74550 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.80 71.98 0.71 -1.87 16 2 C -0.12 -2.26 5.19 30.59 0.16 -2.11 16 3 C 0.12 3.17 2.17 44.99 0.10 3.27 16 4 H 0.10 3.03 7.58 -2.38 -0.02 3.01 16 5 N -0.72 -21.29 4.38 -457.81 -2.01 -23.30 16 6 C 0.70 28.83 8.24 179.06 1.48 30.30 16 7 O -0.63 -31.91 15.58 -4.01 -0.06 -31.97 16 8 N -0.61 -25.16 2.44 -848.58 -2.07 -27.23 16 9 C 0.28 14.77 5.16 85.63 0.44 15.21 16 10 C -0.54 -29.89 9.39 25.60 0.24 -29.65 16 11 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 12 C 0.01 0.54 5.46 84.65 0.46 1.00 16 13 N -0.93 -55.21 13.29 21.45 0.28 -54.92 16 14 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 15 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 16 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 17 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 18 C 0.19 5.94 5.71 85.63 0.49 6.43 16 19 C -0.05 -1.46 6.90 24.83 0.17 -1.29 16 20 C -0.21 -6.29 10.81 22.19 0.24 -6.05 16 21 C -0.23 -5.65 10.91 22.19 0.24 -5.41 16 22 C -0.03 -0.76 12.09 66.97 0.81 0.05 16 23 O -0.18 -4.86 10.65 -2.57 -0.03 -4.89 16 24 C 0.25 6.82 5.05 71.98 0.36 7.18 16 25 F -0.20 -5.28 16.70 44.97 0.75 -4.52 16 26 F -0.20 -5.37 16.93 44.97 0.76 -4.61 16 27 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.05 0.99 7.75 -2.39 -0.02 0.97 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 1.59 7.82 -2.39 -0.02 1.57 16 31 H 0.09 1.44 7.84 -2.39 -0.02 1.42 16 32 H 0.41 10.08 6.33 -92.71 -0.59 9.50 16 33 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 34 H 0.00 -0.17 7.42 -2.39 -0.02 -0.19 16 35 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 36 H 0.12 3.63 8.07 -2.39 -0.02 3.61 16 37 H 0.11 2.57 6.36 -2.38 -0.02 2.56 16 38 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 39 H 0.17 3.24 8.06 -2.91 -0.02 3.21 16 40 H 0.24 3.02 8.06 -2.91 -0.02 3.00 16 41 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -72.09 359.67 6.02 -66.07 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.47 Total: 22.28 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 5.90 Total: 17.07 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -3.79 Total: -105.44 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.09 Total: -36.86 kcal Atomic # 9 Polarization: -10.65 SS G_CDS: 1.51 Total: -9.13 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -72.09 6.02 -66.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603184208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.658 kcal (2) G-P(sol) polarization free energy of solvation -72.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds