Wall clock time and date at job start Tue Mar 31 2020 11:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47490 * 2 1 4 4 N 1.46502 * 109.46761 * 119.99727 * 2 1 3 5 5 C 1.46499 * 120.00130 * 123.03590 * 4 2 1 6 6 C 1.50704 * 109.47022 * 262.86198 * 5 4 2 7 7 H 1.08001 * 119.99960 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00182 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00388 * 179.97438 * 8 6 5 10 10 Si 1.86811 * 119.99881 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.46813 * 90.00235 * 10 8 6 12 12 H 1.48496 * 109.47077 * 210.00331 * 10 8 6 13 13 H 1.48495 * 109.46972 * 330.00728 * 10 8 6 14 14 C 1.34779 * 120.00027 * 303.03368 * 4 2 1 15 15 O 1.21530 * 119.99961 * 3.31074 * 14 4 2 16 16 C 1.48045 * 120.00024 * 183.30953 * 14 4 2 17 17 C 1.39440 * 119.59770 * 172.76922 * 16 14 4 18 18 C 1.38308 * 119.17744 * 179.70608 * 17 16 14 19 19 C 1.39734 * 118.39019 * 0.55091 * 18 17 16 20 20 C 1.48352 * 120.43959 * 179.74976 * 19 18 17 21 21 N 1.34094 * 126.67667 * 359.66802 * 20 19 18 22 22 N 1.28986 * 107.25893 * 179.83131 * 21 20 19 23 23 N 1.28731 * 108.95874 * 0.43370 * 22 21 20 24 24 H 0.97003 * 125.33120 * 179.71799 * 23 22 21 25 25 N 1.28862 * 109.32859 * 359.72488 * 23 22 21 26 26 C 1.39669 * 119.11999 * 359.72866 * 19 18 17 27 27 N 1.31341 * 120.74458 * 359.97438 * 26 19 18 28 28 H 1.08995 * 109.47350 * 305.86379 * 1 2 3 29 29 H 1.09005 * 109.46752 * 65.86187 * 1 2 3 30 30 H 1.09000 * 109.47470 * 185.85624 * 1 2 3 31 31 H 1.08997 * 109.47724 * 239.99046 * 2 1 3 32 32 H 1.08999 * 109.46791 * 184.86649 * 3 2 1 33 33 H 1.08996 * 109.46483 * 304.86853 * 3 2 1 34 34 H 1.08996 * 109.47101 * 64.86460 * 3 2 1 35 35 H 1.09005 * 109.47264 * 22.85330 * 5 4 2 36 36 H 1.08999 * 109.47353 * 142.86096 * 5 4 2 37 37 H 0.96997 * 120.00289 * 179.97438 * 9 8 6 38 38 H 1.07998 * 120.40471 * 359.97438 * 17 16 14 39 39 H 1.08000 * 120.80427 * 180.25853 * 18 17 16 40 40 H 1.08006 * 119.62840 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.9144 -1.8417 1.0630 6 6 2.1130 -3.1150 1.1499 7 1 1.0431 -3.0711 1.2908 8 6 2.7457 -4.3360 1.0507 9 7 2.0464 -5.4472 1.1270 10 14 4.5964 -4.4120 0.8077 11 1 5.2681 -4.4510 2.1315 12 1 4.9450 -5.6341 0.0395 13 1 5.0470 -3.2113 0.0592 14 6 1.6429 -0.2668 2.4194 15 8 0.8523 0.6497 2.5288 16 6 2.1936 -0.9178 3.6296 17 6 1.9203 -0.3790 4.8863 18 6 2.4342 -0.9977 6.0115 19 6 3.2216 -2.1393 5.8408 20 6 3.8003 -2.8358 7.0159 21 7 3.6614 -2.4859 8.3029 22 7 4.3130 -3.3485 9.0065 23 7 4.8549 -4.2087 8.2168 24 1 5.4025 -4.9593 8.4956 25 7 4.5561 -3.9162 6.9979 26 6 3.4563 -2.6163 4.5492 27 7 2.9462 -2.0049 3.5047 28 1 -0.3634 0.6020 0.8328 29 1 -0.3633 0.4203 -0.9379 30 1 -0.3634 -1.0223 0.1049 31 1 1.8934 -0.5139 -0.8898 32 1 3.1265 1.4436 -0.0872 33 1 1.6072 1.9808 -0.8432 34 1 1.7496 1.9305 0.9303 35 1 3.4223 -1.7973 0.0995 36 1 3.6530 -1.8219 1.8643 37 1 2.4914 -6.3062 1.0568 38 1 1.3113 0.5080 4.9801 39 1 2.2356 -0.6053 6.9979 40 1 4.0641 -3.4978 4.4077 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735859548.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:34 Heat of formation + Delta-G solvation = 152.257765 kcal Electronic energy + Delta-G solvation = -26490.375646 eV Core-core repulsion = 22730.696293 eV Total energy + Delta-G solvation = -3759.679353 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.53244 -40.38579 -38.76507 -35.56948 -34.67518 -33.91493 -32.97737 -32.10450 -31.57524 -30.37775 -27.50663 -26.68004 -25.46485 -24.91547 -23.15305 -22.85107 -22.06726 -21.35040 -19.38097 -18.96763 -17.22417 -16.88406 -16.64892 -16.33756 -16.25432 -15.09086 -14.79600 -14.66673 -14.14561 -13.91698 -13.70190 -13.38814 -13.24374 -13.05104 -12.66130 -12.56191 -12.41915 -12.18070 -11.87241 -11.62395 -11.50963 -11.44927 -11.18301 -11.15915 -10.91091 -10.79430 -10.63478 -10.50229 -10.12553 -9.58721 -9.49540 -9.21809 -8.71926 -8.64302 -8.37380 -7.67437 -6.03329 -3.96691 0.46538 1.05811 1.50349 2.13923 2.20750 3.27473 3.32307 3.35277 3.36965 3.56473 3.70774 4.09543 4.26561 4.42881 4.64420 4.98615 5.02344 5.17880 5.26846 5.31812 5.36591 5.43615 5.60008 5.62934 5.76248 5.99303 6.05006 6.11389 6.17497 6.19855 6.27881 6.29890 6.41708 6.62707 6.66299 6.72066 6.87439 7.17056 7.50969 7.67826 8.04058 8.12369 8.20313 8.55100 8.84837 9.01311 9.58385 11.10209 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.012376 B = 0.005127 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.935013 B = 5460.386051 C = 7183.459179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.144 3.856 3 C -0.165 4.165 4 N -0.564 5.564 5 C 0.195 3.805 6 C -0.495 4.495 7 H 0.070 0.930 8 C 0.077 3.923 9 N -0.901 5.901 10 Si 0.869 3.131 11 H -0.273 1.273 12 H -0.290 1.290 13 H -0.267 1.267 14 C 0.569 3.431 15 O -0.557 6.557 16 C 0.105 3.895 17 C -0.123 4.123 18 C -0.049 4.049 19 C -0.066 4.066 20 C 0.229 3.771 21 N -0.268 5.268 22 N -0.053 5.053 23 N -0.228 5.228 24 H 0.475 0.525 25 N -0.286 5.286 26 C 0.136 3.864 27 N -0.390 5.390 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.021 0.979 36 H 0.074 0.926 37 H 0.262 0.738 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.842 6.257 9.138 12.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.041 3.959 3 C -0.223 4.223 4 N -0.292 5.292 5 C 0.074 3.926 6 C -0.534 4.534 7 H 0.088 0.912 8 C -0.125 4.125 9 N -0.541 5.541 10 Si 0.697 3.303 11 H -0.199 1.199 12 H -0.217 1.217 13 H -0.192 1.192 14 C 0.355 3.645 15 O -0.438 6.438 16 C -0.034 4.034 17 C -0.143 4.143 18 C -0.077 4.077 19 C -0.072 4.072 20 C -0.052 4.052 21 N -0.142 5.142 22 N -0.049 5.049 23 N -0.074 5.074 24 H 0.330 0.670 25 N -0.137 5.137 26 C -0.026 4.026 27 N -0.100 5.100 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.039 0.961 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.168 0.832 39 H 0.165 0.835 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.734 6.125 8.931 12.254 hybrid contribution 1.113 -0.796 0.439 1.438 sum 6.848 5.328 9.370 12.770 Atomic orbital electron populations 1.22192 0.95095 1.03035 1.02090 1.20978 0.94791 0.92305 0.87831 1.22181 1.00520 0.96686 1.02913 1.48052 1.46444 1.30716 1.03994 1.20555 0.90715 0.83563 0.97736 1.21151 0.95524 0.88473 1.48267 0.91164 1.24715 0.97373 0.95416 0.94959 1.69903 1.35603 0.97476 1.51110 0.86980 0.87012 0.77584 0.78769 1.19866 1.21673 1.19181 1.17729 0.81389 0.82441 0.82900 1.90640 1.35542 1.31029 1.86569 1.21556 0.95363 0.92550 0.93882 1.21987 0.99757 1.01337 0.91255 1.21451 0.93597 0.92775 0.99834 1.18530 1.01725 0.97100 0.89866 1.23528 0.97156 0.91757 0.92742 1.76079 1.17322 1.19105 1.01644 1.78866 1.07360 0.97677 1.20952 1.47731 1.34941 1.23274 1.01405 0.67041 1.75047 1.17812 1.17044 1.03817 1.23191 0.95470 0.98057 0.85852 1.68784 1.05750 1.05156 1.30272 0.90389 0.92929 0.92158 0.89596 0.93129 0.92229 0.91035 0.96101 0.90871 0.92849 0.83161 0.83492 0.81833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 8.95 37.15 0.33 -2.56 16 2 C 0.14 2.57 3.27 -67.93 -0.22 2.35 16 3 C -0.16 -2.50 9.23 37.16 0.34 -2.16 16 4 N -0.56 -11.58 2.43 -168.50 -0.41 -11.99 16 5 C 0.19 4.39 3.83 -5.19 -0.02 4.37 16 6 C -0.50 -13.06 8.52 -34.44 -0.29 -13.36 16 7 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 8 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 9 N -0.90 -26.41 13.96 55.43 0.77 -25.64 16 10 Si 0.87 20.21 27.47 -169.99 -4.67 15.55 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 14 C 0.57 11.58 6.97 -12.24 -0.09 11.49 16 15 O -0.56 -11.45 12.63 5.34 0.07 -11.39 16 16 C 0.11 2.01 6.62 -82.98 -0.55 1.46 16 17 C -0.12 -1.91 9.61 -39.11 -0.38 -2.28 16 18 C -0.05 -0.69 9.82 -39.00 -0.38 -1.07 16 19 C -0.07 -1.02 5.90 -104.64 -0.62 -1.64 16 20 C 0.23 3.31 7.95 -156.27 -1.24 2.07 16 21 N -0.27 -3.73 12.30 32.15 0.40 -3.33 16 22 N -0.05 -0.63 13.47 60.35 0.81 0.18 16 23 N -0.23 -2.21 7.90 60.35 0.48 -1.73 16 24 H 0.48 2.21 8.96 -340.35 -3.05 -0.84 16 25 N -0.29 -3.77 12.10 32.16 0.39 -3.38 16 26 C 0.14 2.42 10.86 -17.23 -0.19 2.23 16 27 N -0.39 -7.84 4.95 -9.54 -0.05 -7.88 16 28 H 0.08 1.44 6.07 -51.93 -0.32 1.12 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.09 1.49 7.73 -51.93 -0.40 1.09 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.18 6.40 -51.93 -0.33 0.85 16 35 H 0.02 0.47 6.86 -51.93 -0.36 0.11 16 36 H 0.07 1.64 4.66 -52.49 -0.24 1.40 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.15 2.10 7.65 -52.49 -0.40 1.70 16 39 H 0.15 1.69 7.96 -52.49 -0.42 1.28 16 40 H 0.16 2.89 7.89 -52.48 -0.41 2.48 16 LS Contribution 338.07 15.07 5.09 5.09 Total: -1.00 -32.11 338.07 -7.73 -39.84 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.21 Total: 1.81 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -3.40 Total: 2.88 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 2.39 Total: -53.78 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.07 Total: -11.39 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.67 Total: 15.55 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.11 -7.73 -39.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735859548.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.099 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds