Wall clock time and date at job start Tue Mar 31 2020 11:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47490 * 2 1 4 4 N 1.46502 * 109.46761 * 119.99727 * 2 1 3 5 5 C 1.46499 * 120.00130 * 123.03590 * 4 2 1 6 6 C 1.50704 * 109.47022 * 262.86198 * 5 4 2 7 7 H 1.08001 * 119.99960 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00182 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00388 * 179.97438 * 8 6 5 10 10 Si 1.86811 * 119.99881 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.46813 * 90.00235 * 10 8 6 12 12 H 1.48496 * 109.47077 * 210.00331 * 10 8 6 13 13 H 1.48495 * 109.46972 * 330.00728 * 10 8 6 14 14 C 1.34779 * 120.00027 * 303.03368 * 4 2 1 15 15 O 1.21530 * 119.99961 * 3.31074 * 14 4 2 16 16 C 1.48045 * 120.00024 * 183.30953 * 14 4 2 17 17 C 1.39440 * 119.59770 * 172.76922 * 16 14 4 18 18 C 1.38308 * 119.17744 * 179.70608 * 17 16 14 19 19 C 1.39734 * 118.39019 * 0.55091 * 18 17 16 20 20 C 1.48352 * 120.43959 * 179.74976 * 19 18 17 21 21 N 1.34094 * 126.67667 * 359.66802 * 20 19 18 22 22 N 1.28986 * 107.25893 * 179.83131 * 21 20 19 23 23 N 1.28731 * 108.95874 * 0.43370 * 22 21 20 24 24 H 0.97003 * 125.33120 * 179.71799 * 23 22 21 25 25 N 1.28862 * 109.32859 * 359.72488 * 23 22 21 26 26 C 1.39669 * 119.11999 * 359.72866 * 19 18 17 27 27 N 1.31341 * 120.74458 * 359.97438 * 26 19 18 28 28 H 1.08995 * 109.47350 * 305.86379 * 1 2 3 29 29 H 1.09005 * 109.46752 * 65.86187 * 1 2 3 30 30 H 1.09000 * 109.47470 * 185.85624 * 1 2 3 31 31 H 1.08997 * 109.47724 * 239.99046 * 2 1 3 32 32 H 1.08999 * 109.46791 * 184.86649 * 3 2 1 33 33 H 1.08996 * 109.46483 * 304.86853 * 3 2 1 34 34 H 1.08996 * 109.47101 * 64.86460 * 3 2 1 35 35 H 1.09005 * 109.47264 * 22.85330 * 5 4 2 36 36 H 1.08999 * 109.47353 * 142.86096 * 5 4 2 37 37 H 0.96997 * 120.00289 * 179.97438 * 9 8 6 38 38 H 1.07998 * 120.40471 * 359.97438 * 17 16 14 39 39 H 1.08000 * 120.80427 * 180.25853 * 18 17 16 40 40 H 1.08006 * 119.62840 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.9144 -1.8417 1.0630 6 6 2.1130 -3.1150 1.1499 7 1 1.0431 -3.0711 1.2908 8 6 2.7457 -4.3360 1.0507 9 7 2.0464 -5.4472 1.1270 10 14 4.5964 -4.4120 0.8077 11 1 5.2681 -4.4510 2.1315 12 1 4.9450 -5.6341 0.0395 13 1 5.0470 -3.2113 0.0592 14 6 1.6429 -0.2668 2.4194 15 8 0.8523 0.6497 2.5288 16 6 2.1936 -0.9178 3.6296 17 6 1.9203 -0.3790 4.8863 18 6 2.4342 -0.9977 6.0115 19 6 3.2216 -2.1393 5.8408 20 6 3.8003 -2.8358 7.0159 21 7 3.6614 -2.4859 8.3029 22 7 4.3130 -3.3485 9.0065 23 7 4.8549 -4.2087 8.2168 24 1 5.4025 -4.9593 8.4956 25 7 4.5561 -3.9162 6.9979 26 6 3.4563 -2.6163 4.5492 27 7 2.9462 -2.0049 3.5047 28 1 -0.3634 0.6020 0.8328 29 1 -0.3633 0.4203 -0.9379 30 1 -0.3634 -1.0223 0.1049 31 1 1.8934 -0.5139 -0.8898 32 1 3.1265 1.4436 -0.0872 33 1 1.6072 1.9808 -0.8432 34 1 1.7496 1.9305 0.9303 35 1 3.4223 -1.7973 0.0995 36 1 3.6530 -1.8219 1.8643 37 1 2.4914 -6.3062 1.0568 38 1 1.3113 0.5080 4.9801 39 1 2.2356 -0.6053 6.9979 40 1 4.0641 -3.4978 4.4077 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735859548.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:33 Heat of formation + Delta-G solvation = 130.668079 kcal Electronic energy + Delta-G solvation = -26491.311845 eV Core-core repulsion = 22730.696293 eV Total energy + Delta-G solvation = -3760.615552 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.52826 -41.80554 -40.20820 -37.14942 -35.77362 -35.07615 -34.66492 -33.55666 -33.07814 -31.68368 -29.36555 -28.00092 -26.75056 -25.97838 -24.56226 -24.21064 -23.64431 -22.70313 -20.53549 -20.21567 -18.92321 -18.20571 -18.11883 -17.68001 -17.61461 -16.54336 -16.33090 -16.23462 -15.64578 -15.27322 -14.94744 -14.78174 -14.69050 -14.53667 -14.27769 -14.05799 -13.75988 -13.37737 -13.31696 -13.13009 -12.83461 -12.56548 -12.52499 -12.48770 -12.29341 -12.23680 -12.13142 -11.99029 -11.84979 -11.55578 -10.86554 -10.77187 -10.58773 -10.01339 -9.91336 -9.31336 -8.13234 -6.11307 -0.79418 0.07522 0.25430 1.01301 1.35406 1.44947 1.45397 1.54470 1.87759 2.20706 2.46718 2.51850 2.86981 3.01722 3.23394 3.26155 3.66474 3.79962 4.01859 4.05177 4.08821 4.22756 4.27677 4.40127 4.43589 4.70268 4.72116 4.82552 4.88822 4.98062 5.00958 5.02361 5.03997 5.26639 5.32895 5.43167 5.55196 5.56462 5.66769 5.92703 6.32207 6.62738 6.79677 6.87534 7.04132 7.28976 7.49464 9.04265 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.012376 B = 0.005127 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.935013 B = 5460.386051 C = 7183.459179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.132 3.868 3 C -0.152 4.152 4 N -0.574 5.574 5 C 0.205 3.795 6 C -0.484 4.484 7 H 0.017 0.983 8 C 0.025 3.975 9 N -0.954 5.954 10 Si 0.929 3.071 11 H -0.257 1.257 12 H -0.295 1.295 13 H -0.247 1.247 14 C 0.563 3.437 15 O -0.565 6.565 16 C 0.074 3.926 17 C -0.109 4.109 18 C -0.033 4.033 19 C -0.053 4.053 20 C 0.213 3.787 21 N -0.279 5.279 22 N -0.049 5.049 23 N -0.197 5.197 24 H 0.496 0.504 25 N -0.294 5.294 26 C 0.121 3.879 27 N -0.423 5.423 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.027 0.973 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.027 0.973 36 H 0.084 0.916 37 H 0.261 0.739 38 H 0.168 0.832 39 H 0.180 0.820 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.652 7.542 10.372 14.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.029 3.971 3 C -0.210 4.210 4 N -0.302 5.302 5 C 0.084 3.916 6 C -0.523 4.523 7 H 0.035 0.965 8 C -0.172 4.172 9 N -0.596 5.596 10 Si 0.753 3.247 11 H -0.181 1.181 12 H -0.221 1.221 13 H -0.170 1.170 14 C 0.350 3.650 15 O -0.446 6.446 16 C -0.064 4.064 17 C -0.130 4.130 18 C -0.060 4.060 19 C -0.059 4.059 20 C -0.067 4.067 21 N -0.152 5.152 22 N -0.044 5.044 23 N -0.048 5.048 24 H 0.355 0.645 25 N -0.147 5.147 26 C -0.041 4.041 27 N -0.133 5.133 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.046 0.954 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.186 0.814 39 H 0.197 0.803 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 7.550 7.437 10.175 14.691 hybrid contribution 0.482 -1.236 0.214 1.344 sum 8.031 6.201 10.389 14.522 Atomic orbital electron populations 1.22103 0.95145 1.00897 1.03335 1.21273 0.94859 0.93932 0.87039 1.22066 1.01061 0.94541 1.03305 1.48108 1.46556 1.30439 1.05100 1.20318 0.90657 0.82487 0.98169 1.21160 0.93268 0.90559 1.47291 0.96463 1.25469 1.02263 0.94720 0.94707 1.70069 1.37837 0.98203 1.53536 0.86000 0.81087 0.77969 0.79615 1.18106 1.22140 1.17031 1.18037 0.81192 0.82403 0.83350 1.90615 1.35764 1.31388 1.86818 1.21552 0.96963 0.93264 0.94599 1.22161 0.99032 1.01436 0.90326 1.21762 0.91933 0.91677 1.00650 1.18538 1.00874 0.97042 0.89420 1.23337 0.98201 0.92451 0.92715 1.76066 1.17993 1.19858 1.01254 1.78820 1.07205 0.97681 1.20700 1.47778 1.33715 1.23084 1.00231 0.64506 1.75010 1.17682 1.16786 1.05184 1.23115 0.96143 0.98269 0.86579 1.68507 1.06883 1.06006 1.31933 0.91541 0.89673 0.95389 0.89303 0.92357 0.89422 0.92503 0.95493 0.89951 0.92988 0.81420 0.80289 0.82303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.49 8.95 71.98 0.64 -4.85 16 2 C 0.13 4.63 3.27 44.99 0.15 4.78 16 3 C -0.15 -4.34 9.23 71.98 0.66 -3.67 16 4 N -0.57 -23.83 2.43 -805.30 -1.96 -25.78 16 5 C 0.21 9.31 3.83 85.63 0.33 9.63 16 6 C -0.48 -26.47 8.52 25.60 0.22 -26.25 16 7 H 0.02 1.10 8.06 -2.91 -0.02 1.07 16 8 C 0.02 1.38 5.47 84.65 0.46 1.84 16 9 N -0.95 -58.09 13.96 21.45 0.30 -57.79 16 10 Si 0.93 41.65 27.47 68.60 1.88 43.54 16 11 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 12 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 13 H -0.25 -10.17 6.54 99.48 0.65 -9.52 16 14 C 0.56 23.17 6.97 86.85 0.61 23.77 16 15 O -0.56 -23.27 12.63 -3.81 -0.05 -23.32 16 16 C 0.07 2.84 6.62 41.89 0.28 3.11 16 17 C -0.11 -3.25 9.61 22.58 0.22 -3.03 16 18 C -0.03 -0.85 9.82 22.65 0.22 -0.63 16 19 C -0.05 -1.56 5.90 -19.88 -0.12 -1.68 16 20 C 0.21 5.77 7.95 137.32 1.09 6.86 16 21 N -0.28 -7.07 12.30 -52.21 -0.64 -7.71 16 22 N -0.05 -1.03 13.47 37.02 0.50 -0.53 16 23 N -0.20 -3.31 7.90 37.02 0.29 -3.02 16 24 H 0.50 3.19 8.96 -347.52 -3.12 0.07 16 25 N -0.29 -7.17 12.10 -52.16 -0.63 -7.80 16 26 C 0.12 4.28 10.86 85.11 0.92 5.21 16 27 N -0.42 -17.16 4.95 -184.11 -0.91 -18.07 16 28 H 0.07 2.47 6.07 -2.39 -0.01 2.45 16 29 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 30 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 3.03 7.73 -2.39 -0.02 3.01 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.06 1.80 6.40 -2.39 -0.02 1.79 16 35 H 0.03 1.19 6.86 -2.38 -0.02 1.17 16 36 H 0.08 3.68 4.66 -3.49 -0.02 3.66 16 37 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 38 H 0.17 4.37 7.65 -2.91 -0.02 4.35 16 39 H 0.18 3.51 7.96 -2.91 -0.02 3.48 16 40 H 0.16 5.63 7.89 -2.91 -0.02 5.61 16 Total: -1.00 -72.16 338.07 2.40 -69.76 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -2.07 Total: 15.64 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 5.69 Total: 15.09 kcal Atomic # 7 Polarization: -117.67 SS G_CDS: -3.05 Total: -120.72 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.05 Total: -23.32 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.88 Total: 43.54 kcal Total: -72.16 2.40 -69.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735859548.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.433 kcal (2) G-P(sol) polarization free energy of solvation -72.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds