Wall clock time and date at job start Tue Mar 31 2020 10:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38194 * 119.95424 * 2 1 4 4 C 1.38128 * 120.13890 * 180.02562 * 3 2 1 5 5 C 1.38982 * 120.05074 * 359.97031 * 4 3 2 6 6 N 1.39677 * 120.03661 * 180.02562 * 5 4 3 7 7 C 1.46501 * 120.00384 * 0.02562 * 6 5 4 8 8 C 1.50698 * 109.47139 * 179.97438 * 7 6 5 9 9 O 1.21280 * 120.00232 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00142 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00130 * 179.97438 * 10 8 7 12 12 C 1.50707 * 109.46908 * 179.97438 * 11 10 8 13 13 H 1.07994 * 120.00265 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99957 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00180 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99835 * 0.02562 * 14 12 11 17 17 H 1.48507 * 109.46761 * 89.99506 * 16 14 12 18 18 H 1.48497 * 109.47028 * 209.99527 * 16 14 12 19 19 H 1.48501 * 109.47333 * 330.00135 * 16 14 12 20 20 C 1.38780 * 119.91802 * 359.81486 * 5 4 3 21 21 C 1.38711 * 119.85762 * 0.44381 * 20 5 4 22 22 N 1.40259 * 120.02607 * 179.79188 * 21 20 5 23 23 C 1.35070 * 127.38651 * 312.62541 * 22 21 20 24 24 N 1.30737 * 107.27377 * 179.97438 * 23 22 21 25 25 N 1.28421 * 110.64692 * 359.97438 * 24 23 22 26 26 N 1.28951 * 110.20269 * 0.02562 * 25 24 23 27 27 H 1.09004 * 109.47152 * 264.63438 * 1 2 3 28 28 H 1.09001 * 109.47177 * 24.63444 * 1 2 3 29 29 H 1.09000 * 109.46755 * 144.63822 * 1 2 3 30 30 H 1.07997 * 119.93442 * 0.02562 * 3 2 1 31 31 H 1.07993 * 119.97580 * 179.97438 * 4 3 2 32 32 H 0.97005 * 119.99776 * 179.97438 * 6 5 4 33 33 H 1.09004 * 109.46386 * 299.99424 * 7 6 5 34 34 H 1.08998 * 109.47206 * 59.99495 * 7 6 5 35 35 H 0.97000 * 119.99841 * 0.02562 * 10 8 7 36 36 H 1.08994 * 109.47489 * 299.99900 * 11 10 8 37 37 H 1.09004 * 109.46939 * 60.00739 * 11 10 8 38 38 H 0.96996 * 119.99826 * 180.02562 * 15 14 12 39 39 H 1.07997 * 120.06884 * 180.22863 * 20 5 4 40 40 H 1.08007 * 126.36385 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1973 0.0000 4 6 3.5783 1.2018 -0.0005 5 6 4.2781 0.0010 -0.0005 6 7 5.6749 0.0059 -0.0004 7 6 6.4031 1.2771 0.0000 8 6 7.8856 1.0068 0.0006 9 8 8.2938 -0.1352 0.0010 10 7 8.7579 2.0341 0.0005 11 6 10.1992 1.7713 0.0016 12 6 10.9482 3.0791 0.0007 13 1 10.4051 4.0125 -0.0001 14 6 12.3270 3.0838 0.0020 15 7 12.9807 4.2250 0.0018 16 14 13.2665 1.4692 0.0042 17 1 13.5167 1.0403 -1.3954 18 1 14.5628 1.6518 0.7052 19 1 12.4669 0.4321 0.7043 20 6 3.5875 -1.2027 0.0041 21 6 2.2004 -1.2030 -0.0009 22 7 1.4988 -2.4175 -0.0007 23 6 1.7206 -3.4929 -0.7873 24 7 0.8421 -4.4031 -0.4573 25 7 0.0803 -3.9768 0.4846 26 7 0.4144 -2.7770 0.8188 27 1 -0.3634 -0.0961 1.0232 28 1 -0.3633 0.9341 -0.4284 29 1 -0.3633 -0.8381 -0.5948 30 1 1.6552 2.1316 0.0004 31 1 4.1148 2.1390 -0.0010 32 1 6.1628 -0.8325 0.0000 33 1 6.1378 1.8480 -0.8899 34 1 6.1378 1.8475 0.8902 35 1 8.4315 2.9475 0.0006 36 1 10.4639 1.2012 0.8920 37 1 10.4650 1.2002 -0.8880 38 1 13.9507 4.2282 0.0023 39 1 4.1288 -2.1371 0.0079 40 1 2.4823 -3.5839 -1.5477 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759767500.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:51 Heat of formation + Delta-G solvation = 114.934599 kcal Electronic energy + Delta-G solvation = -24431.412255 eV Core-core repulsion = 20670.114448 eV Total energy + Delta-G solvation = -3761.297807 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.48771 -40.32459 -39.30097 -36.58461 -34.83880 -34.50619 -32.70365 -32.54612 -31.99064 -30.60513 -29.09985 -27.44885 -25.52237 -25.14148 -23.55759 -22.75200 -22.14921 -21.26325 -20.24495 -18.77737 -17.99178 -17.08178 -16.67114 -16.36879 -16.33782 -15.73859 -15.68128 -15.36821 -15.15996 -14.44282 -14.42664 -14.02392 -13.89077 -13.72244 -13.62865 -13.07362 -12.84512 -12.70555 -12.56558 -12.47129 -12.26590 -12.04500 -11.76167 -11.48691 -11.29882 -11.18108 -10.90051 -10.77888 -10.26822 -10.10940 -9.68423 -9.60580 -9.32528 -8.92853 -8.43772 -7.78000 -6.33902 -4.37696 0.18311 0.96811 1.09513 1.48181 1.94973 2.82928 2.90308 3.16720 3.20451 3.24433 3.30476 3.74149 3.79479 4.19826 4.21338 4.39069 4.48710 4.58500 4.64922 4.82217 4.89618 5.00888 5.02795 5.09137 5.11509 5.14700 5.22061 5.27836 5.31916 5.58963 5.72859 5.84981 5.89303 6.06591 6.36853 6.58144 6.82959 6.87793 6.93330 7.19766 7.39213 7.90114 8.08119 8.28279 8.50400 8.66387 9.24776 10.77754 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.028712 B = 0.002116 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.957865 B =13226.552209 C =14093.149164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.121 4.121 3 C -0.054 4.054 4 C -0.177 4.177 5 C 0.239 3.761 6 N -0.725 5.725 7 C 0.101 3.899 8 C 0.495 3.505 9 O -0.555 6.555 10 N -0.697 5.697 11 C 0.220 3.780 12 C -0.548 4.548 13 H 0.081 0.919 14 C 0.079 3.921 15 N -0.889 5.889 16 Si 0.877 3.123 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.261 1.261 20 C -0.184 4.184 21 C 0.160 3.840 22 N -0.324 5.324 23 C 0.231 3.769 24 N -0.335 5.335 25 N -0.043 5.043 26 N -0.071 5.071 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.414 0.586 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.400 0.600 36 H 0.027 0.973 37 H 0.023 0.977 38 H 0.269 0.731 39 H 0.133 0.867 40 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.758 -6.094 -2.178 23.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.126 4.126 3 C -0.073 4.073 4 C -0.200 4.200 5 C 0.132 3.868 6 N -0.356 5.356 7 C -0.027 4.027 8 C 0.279 3.721 9 O -0.435 6.435 10 N -0.345 5.345 11 C 0.099 3.901 12 C -0.586 4.586 13 H 0.099 0.901 14 C -0.126 4.126 15 N -0.526 5.526 16 Si 0.703 3.297 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.186 1.186 20 C -0.210 4.210 21 C 0.069 3.931 22 N -0.115 5.115 23 C -0.066 4.066 24 N -0.185 5.185 25 N -0.039 5.039 26 N -0.056 5.056 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.253 0.747 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.234 0.766 36 H 0.045 0.955 37 H 0.041 0.959 38 H 0.079 0.921 39 H 0.151 0.849 40 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -23.223 -7.187 -1.432 24.351 hybrid contribution 1.636 -0.045 -0.447 1.697 sum -21.586 -7.232 -1.880 22.843 Atomic orbital electron populations 1.20668 0.90269 1.02275 1.02907 1.19517 0.96604 0.90927 1.05536 1.20728 0.93259 0.96914 0.96408 1.20927 0.94353 0.96957 1.07800 1.17403 0.83653 0.92808 0.92919 1.44465 1.01812 1.08869 1.80415 1.21177 0.90571 0.87297 1.03674 1.20321 0.87945 0.86080 0.77777 1.90660 1.79668 1.21639 1.51515 1.46136 1.08477 1.08401 1.71466 1.19560 0.75508 0.98075 0.97004 1.21047 0.91885 0.91745 1.53941 0.90120 1.24799 0.97376 0.96651 0.93746 1.69868 1.08398 1.25411 1.48873 0.86815 0.79751 0.84000 0.79091 1.19788 1.20773 1.18587 1.20251 0.91184 0.98090 1.11463 1.16883 0.89350 0.81204 1.05676 1.48974 1.24190 1.12668 1.25668 1.27550 0.99675 0.82864 0.96526 1.74484 1.05878 1.26169 1.11920 1.78076 1.16933 1.02548 1.06294 1.82742 1.00114 1.09463 1.13253 0.90533 0.91220 0.92600 0.84562 0.84720 0.74672 0.88954 0.89000 0.76603 0.95484 0.95926 0.92105 0.84937 0.74582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 8.89 36.01 0.32 -0.46 16 2 C -0.12 -1.00 5.90 -104.41 -0.62 -1.61 16 3 C -0.05 -0.37 9.66 -39.64 -0.38 -0.75 16 4 C -0.18 -1.33 9.31 -39.35 -0.37 -1.69 16 5 C 0.24 2.11 6.65 -83.81 -0.56 1.55 16 6 N -0.72 -7.33 5.70 -59.82 -0.34 -7.67 16 7 C 0.10 1.02 5.39 -5.19 -0.03 0.99 16 8 C 0.49 7.73 7.90 -10.99 -0.09 7.65 16 9 O -0.56 -10.75 15.67 5.56 0.09 -10.66 16 10 N -0.70 -12.08 5.55 -61.47 -0.34 -12.43 16 11 C 0.22 4.96 4.50 -5.19 -0.02 4.94 16 12 C -0.55 -14.08 9.83 -34.44 -0.34 -14.42 16 13 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 14 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 15 N -0.89 -25.30 13.96 55.43 0.77 -24.53 16 16 Si 0.88 20.40 27.47 -169.99 -4.67 15.74 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 20 C -0.18 -1.56 9.52 -39.21 -0.37 -1.93 16 21 C 0.16 1.43 6.30 -83.60 -0.53 0.90 16 22 N -0.32 -3.12 3.15 -11.76 -0.04 -3.16 16 23 C 0.23 1.89 12.54 -90.15 -1.13 0.76 16 24 N -0.34 -3.77 12.15 29.64 0.36 -3.41 16 25 N -0.04 -0.55 13.39 60.35 0.81 0.26 16 26 N -0.07 -0.84 12.37 60.35 0.75 -0.09 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.39 8.05 -51.93 -0.42 -0.03 16 29 H 0.06 0.49 7.21 -51.93 -0.37 0.11 16 30 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 31 H 0.13 0.80 6.72 -52.49 -0.35 0.45 16 32 H 0.41 4.67 7.45 -40.82 -0.30 4.36 16 33 H 0.09 0.74 7.95 -51.93 -0.41 0.33 16 34 H 0.09 0.76 7.95 -51.93 -0.41 0.35 16 35 H 0.40 5.86 8.32 -40.82 -0.34 5.52 16 36 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 37 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 38 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.13 0.98 8.05 -52.49 -0.42 0.56 16 40 H 0.24 0.80 8.06 -52.48 -0.42 0.37 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -32.75 348.90 -6.21 -38.96 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -4.65 Total: 3.80 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -4.21 Total: -2.07 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 1.97 Total: -51.02 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.67 Total: 15.74 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.75 -6.21 -38.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759767500.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.897 kcal (2) G-P(sol) polarization free energy of solvation -32.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds