Wall clock time and date at job start Tue Mar 31 2020 10:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38194 * 119.95424 * 2 1 4 4 C 1.38128 * 120.13890 * 180.02562 * 3 2 1 5 5 C 1.38982 * 120.05074 * 359.97031 * 4 3 2 6 6 N 1.39677 * 120.03661 * 180.02562 * 5 4 3 7 7 C 1.46501 * 120.00384 * 0.02562 * 6 5 4 8 8 C 1.50698 * 109.47139 * 179.97438 * 7 6 5 9 9 O 1.21280 * 120.00232 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00142 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00130 * 179.97438 * 10 8 7 12 12 C 1.50707 * 109.46908 * 179.97438 * 11 10 8 13 13 H 1.07994 * 120.00265 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99957 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00180 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99835 * 0.02562 * 14 12 11 17 17 H 1.48507 * 109.46761 * 89.99506 * 16 14 12 18 18 H 1.48497 * 109.47028 * 209.99527 * 16 14 12 19 19 H 1.48501 * 109.47333 * 330.00135 * 16 14 12 20 20 C 1.38780 * 119.91802 * 359.81486 * 5 4 3 21 21 C 1.38711 * 119.85762 * 0.44381 * 20 5 4 22 22 N 1.40259 * 120.02607 * 179.79188 * 21 20 5 23 23 C 1.35070 * 127.38651 * 312.62541 * 22 21 20 24 24 N 1.30737 * 107.27377 * 179.97438 * 23 22 21 25 25 N 1.28421 * 110.64692 * 359.97438 * 24 23 22 26 26 N 1.28951 * 110.20269 * 0.02562 * 25 24 23 27 27 H 1.09004 * 109.47152 * 264.63438 * 1 2 3 28 28 H 1.09001 * 109.47177 * 24.63444 * 1 2 3 29 29 H 1.09000 * 109.46755 * 144.63822 * 1 2 3 30 30 H 1.07997 * 119.93442 * 0.02562 * 3 2 1 31 31 H 1.07993 * 119.97580 * 179.97438 * 4 3 2 32 32 H 0.97005 * 119.99776 * 179.97438 * 6 5 4 33 33 H 1.09004 * 109.46386 * 299.99424 * 7 6 5 34 34 H 1.08998 * 109.47206 * 59.99495 * 7 6 5 35 35 H 0.97000 * 119.99841 * 0.02562 * 10 8 7 36 36 H 1.08994 * 109.47489 * 299.99900 * 11 10 8 37 37 H 1.09004 * 109.46939 * 60.00739 * 11 10 8 38 38 H 0.96996 * 119.99826 * 180.02562 * 15 14 12 39 39 H 1.07997 * 120.06884 * 180.22863 * 20 5 4 40 40 H 1.08007 * 126.36385 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1973 0.0000 4 6 3.5783 1.2018 -0.0005 5 6 4.2781 0.0010 -0.0005 6 7 5.6749 0.0059 -0.0004 7 6 6.4031 1.2771 0.0000 8 6 7.8856 1.0068 0.0006 9 8 8.2938 -0.1352 0.0010 10 7 8.7579 2.0341 0.0005 11 6 10.1992 1.7713 0.0016 12 6 10.9482 3.0791 0.0007 13 1 10.4051 4.0125 -0.0001 14 6 12.3270 3.0838 0.0020 15 7 12.9807 4.2250 0.0018 16 14 13.2665 1.4692 0.0042 17 1 13.5167 1.0403 -1.3954 18 1 14.5628 1.6518 0.7052 19 1 12.4669 0.4321 0.7043 20 6 3.5875 -1.2027 0.0041 21 6 2.2004 -1.2030 -0.0009 22 7 1.4988 -2.4175 -0.0007 23 6 1.7206 -3.4929 -0.7873 24 7 0.8421 -4.4031 -0.4573 25 7 0.0803 -3.9768 0.4846 26 7 0.4144 -2.7770 0.8188 27 1 -0.3634 -0.0961 1.0232 28 1 -0.3633 0.9341 -0.4284 29 1 -0.3633 -0.8381 -0.5948 30 1 1.6552 2.1316 0.0004 31 1 4.1148 2.1390 -0.0010 32 1 6.1628 -0.8325 0.0000 33 1 6.1378 1.8480 -0.8899 34 1 6.1378 1.8475 0.8902 35 1 8.4315 2.9475 0.0006 36 1 10.4639 1.2012 0.8920 37 1 10.4650 1.2002 -0.8880 38 1 13.9507 4.2282 0.0023 39 1 4.1288 -2.1371 0.0079 40 1 2.4823 -3.5839 -1.5477 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759767500.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:51 Heat of formation + Delta-G solvation = 91.932801 kcal Electronic energy + Delta-G solvation = -24432.409688 eV Core-core repulsion = 20670.114448 eV Total energy + Delta-G solvation = -3762.295239 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.25432 -41.09638 -40.43051 -37.37143 -36.20832 -35.43574 -34.44655 -33.44881 -32.73745 -31.22399 -30.51309 -28.57878 -26.39141 -25.79183 -24.30230 -24.06790 -23.22313 -22.00738 -21.53114 -19.57108 -19.22120 -18.30767 -17.70423 -17.29406 -17.07528 -16.76421 -16.71334 -16.65962 -15.92501 -15.76358 -15.25370 -15.07863 -14.78163 -14.58660 -14.56467 -14.33665 -14.13172 -13.90967 -13.65280 -13.28074 -13.08582 -13.05613 -12.78702 -12.70119 -12.37143 -12.20377 -12.01567 -11.95201 -11.65901 -11.57114 -10.99303 -10.92719 -10.91302 -9.99680 -9.92322 -8.43815 -8.40130 -6.47125 -0.49313 0.34006 0.45198 0.81340 1.18032 1.32394 1.35907 1.46270 1.60689 2.01766 2.27260 2.60331 2.67539 2.95638 3.22072 3.58197 3.75444 3.80262 3.87575 3.94566 4.08760 4.21293 4.29186 4.36787 4.42142 4.47739 4.65302 4.67467 4.74896 4.77616 5.01369 5.01982 5.15113 5.25333 5.26858 5.32394 5.45000 5.49542 5.75728 6.04926 6.18797 6.54126 6.60258 6.79136 7.13858 7.29078 7.32422 8.74245 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.028712 B = 0.002116 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.957865 B =13226.552209 C =14093.149164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.128 4.128 3 C -0.049 4.049 4 C -0.173 4.173 5 C 0.229 3.771 6 N -0.734 5.734 7 C 0.115 3.885 8 C 0.495 3.505 9 O -0.594 6.594 10 N -0.698 5.698 11 C 0.231 3.769 12 C -0.546 4.546 13 H 0.063 0.937 14 C 0.025 3.975 15 N -0.930 5.930 16 Si 0.936 3.064 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.259 1.259 20 C -0.185 4.185 21 C 0.144 3.856 22 N -0.323 5.323 23 C 0.244 3.756 24 N -0.360 5.360 25 N -0.067 5.067 26 N -0.090 5.090 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.039 0.961 30 H 0.164 0.836 31 H 0.156 0.844 32 H 0.407 0.593 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.414 0.586 36 H 0.013 0.987 37 H 0.013 0.987 38 H 0.272 0.728 39 H 0.138 0.862 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.565 -5.665 -2.708 24.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.132 4.132 3 C -0.068 4.068 4 C -0.196 4.196 5 C 0.123 3.877 6 N -0.365 5.365 7 C -0.012 4.012 8 C 0.282 3.718 9 O -0.475 6.475 10 N -0.348 5.348 11 C 0.107 3.893 12 C -0.584 4.584 13 H 0.081 0.919 14 C -0.175 4.175 15 N -0.569 5.569 16 Si 0.760 3.240 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.184 1.184 20 C -0.210 4.210 21 C 0.053 3.947 22 N -0.113 5.113 23 C -0.053 4.053 24 N -0.210 5.210 25 N -0.063 5.063 26 N -0.076 5.076 27 H 0.088 0.912 28 H 0.109 0.891 29 H 0.058 0.942 30 H 0.181 0.819 31 H 0.174 0.826 32 H 0.245 0.755 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.250 0.750 36 H 0.031 0.969 37 H 0.031 0.969 38 H 0.081 0.919 39 H 0.156 0.844 40 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -24.085 -6.735 -1.962 25.085 hybrid contribution 1.827 -0.114 -0.301 1.855 sum -22.258 -6.849 -2.264 23.397 Atomic orbital electron populations 1.20644 0.90080 1.02719 1.02334 1.19761 0.96936 0.91299 1.05223 1.21023 0.93224 0.97394 0.95200 1.21216 0.94640 0.97240 1.06470 1.17500 0.83029 0.93443 0.93719 1.44449 1.02253 1.08396 1.81381 1.21184 0.85898 0.87845 1.06316 1.21215 0.90036 0.84785 0.75766 1.90646 1.80866 1.23221 1.52798 1.45922 1.06699 1.09883 1.72315 1.19108 0.78489 0.95860 0.95810 1.21304 0.92102 0.92509 1.52469 0.91865 1.25599 0.98626 0.99545 0.93753 1.69976 1.08840 1.27413 1.50677 0.85883 0.78533 0.80238 0.79361 1.19075 1.20226 1.18360 1.20311 0.90980 0.98566 1.11177 1.17062 0.89575 0.81154 1.06889 1.49016 1.23690 1.13251 1.25392 1.28350 0.99193 0.81580 0.96136 1.74415 1.06818 1.27498 1.12285 1.78053 1.17926 1.03064 1.07211 1.82672 1.01328 1.09373 1.14200 0.91234 0.89068 0.94222 0.81869 0.82615 0.75538 0.85959 0.86331 0.74985 0.96893 0.96869 0.91913 0.84376 0.70375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 8.89 71.24 0.63 -0.73 16 2 C -0.13 -1.82 5.90 -19.73 -0.12 -1.93 16 3 C -0.05 -0.51 9.66 22.23 0.21 -0.29 16 4 C -0.17 -1.91 9.31 22.42 0.21 -1.71 16 5 C 0.23 3.37 6.65 38.20 0.25 3.63 16 6 N -0.73 -12.85 5.70 -343.18 -1.96 -14.81 16 7 C 0.11 1.91 5.39 85.63 0.46 2.37 16 8 C 0.49 14.47 7.90 87.66 0.69 15.16 16 9 O -0.59 -22.33 15.67 -3.03 -0.05 -22.37 16 10 N -0.70 -23.14 5.55 -466.79 -2.59 -25.73 16 11 C 0.23 10.25 4.50 85.64 0.39 10.64 16 12 C -0.55 -28.02 9.83 25.60 0.25 -27.77 16 13 H 0.06 3.39 7.84 -2.91 -0.02 3.36 16 14 C 0.03 1.36 5.47 84.66 0.46 1.82 16 15 N -0.93 -53.38 13.96 21.45 0.30 -53.08 16 16 Si 0.94 41.93 27.47 68.60 1.88 43.82 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 18 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 19 H -0.26 -11.43 6.54 99.48 0.65 -10.78 16 20 C -0.18 -2.76 9.52 22.51 0.21 -2.55 16 21 C 0.14 2.33 6.30 38.05 0.24 2.57 16 22 N -0.32 -5.92 3.15 -191.11 -0.60 -6.53 16 23 C 0.24 3.68 12.54 180.18 2.26 5.94 16 24 N -0.36 -8.00 12.15 -60.13 -0.73 -8.74 16 25 N -0.07 -1.74 13.39 37.02 0.50 -1.24 16 26 N -0.09 -2.15 12.37 37.02 0.46 -1.69 16 27 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.09 0.80 8.05 -2.39 -0.02 0.78 16 29 H 0.04 0.66 7.21 -2.39 -0.02 0.65 16 30 H 0.16 0.77 8.06 -2.91 -0.02 0.74 16 31 H 0.16 1.04 6.72 -2.91 -0.02 1.02 16 32 H 0.41 8.49 7.45 -92.70 -0.69 7.80 16 33 H 0.12 1.38 7.95 -2.39 -0.02 1.36 16 34 H 0.12 1.42 7.95 -2.39 -0.02 1.40 16 35 H 0.41 11.31 8.32 -92.71 -0.77 10.54 16 36 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 37 H 0.01 0.62 7.57 -2.38 -0.02 0.60 16 38 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 39 H 0.14 1.81 8.05 -2.91 -0.02 1.79 16 40 H 0.28 1.18 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -72.53 348.90 2.96 -69.57 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -0.41 Total: 13.64 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 6.16 Total: 7.16 kcal Atomic # 7 Polarization: -107.19 SS G_CDS: -4.63 Total: -111.82 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.05 Total: -22.37 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.88 Total: 43.82 kcal Total: -72.53 2.96 -69.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759767500.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.504 kcal (2) G-P(sol) polarization free energy of solvation -72.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds